Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19660

Experiment: Paraquat dichloride 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19655 and BWI76_RS19660 are separated by 15 nucleotidesBWI76_RS19660 and BWI76_RS19665 are separated by 242 nucleotidesBWI76_RS19665 and BWI76_RS19670 overlap by 73 nucleotides BWI76_RS19655: BWI76_RS19655 - hypothetical protein, at 4,108,074 to 4,109,231 _RS19655 BWI76_RS19660: BWI76_RS19660 - GTP cyclohydrolase I FolE, at 4,109,247 to 4,109,915 _RS19660 BWI76_RS19665: BWI76_RS19665 - hypothetical protein, at 4,110,158 to 4,110,355 _RS19665 BWI76_RS19670: BWI76_RS19670 - S-formylglutathione hydrolase, at 4,110,283 to 4,111,119 _RS19670 Position (kb) 4109 4110Strain fitness (log2 ratio) -2 -1 0 1at 4108.385 kb on - strand, within BWI76_RS19655at 4108.552 kb on + strand, within BWI76_RS19655at 4109.085 kb on + strand, within BWI76_RS19655at 4109.085 kb on + strand, within BWI76_RS19655at 4109.125 kb on + strandat 4109.236 kb on - strandat 4110.289 kb on - strandat 4110.568 kb on - strand, within BWI76_RS19670at 4110.738 kb on + strand, within BWI76_RS19670

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.1 mg/ml
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4,108,385 - BWI76_RS19655 0.27 -0.6
4,108,552 + BWI76_RS19655 0.41 -0.0
4,109,085 + BWI76_RS19655 0.87 +0.8
4,109,085 + BWI76_RS19655 0.87 -1.0
4,109,125 + -0.4
4,109,236 - -0.3
4,110,289 - -0.9
4,110,568 - BWI76_RS19670 0.34 -2.1
4,110,738 + BWI76_RS19670 0.54 -0.2

Or see this region's nucleotide sequence