Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18295

Experiment: Paraquat dichloride 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS18285 and BWI76_RS18290 are separated by 36 nucleotidesBWI76_RS18290 and BWI76_RS18295 are separated by 193 nucleotidesBWI76_RS18295 and BWI76_RS18300 are separated by 30 nucleotidesBWI76_RS18300 and BWI76_RS18305 are separated by 66 nucleotides BWI76_RS18285: BWI76_RS18285 - ferritin, at 3,800,509 to 3,801,006 _RS18285 BWI76_RS18290: BWI76_RS18290 - hypothetical protein, at 3,801,043 to 3,801,282 _RS18290 BWI76_RS18295: BWI76_RS18295 - tyrosine transporter TyrP, at 3,801,476 to 3,802,687 _RS18295 BWI76_RS18300: BWI76_RS18300 - hypothetical protein, at 3,802,718 to 3,803,386 _RS18300 BWI76_RS18305: BWI76_RS18305 - dihydrodipicolinate synthase family protein, at 3,803,453 to 3,804,340 _RS18305 Position (kb) 3801 3802 3803Strain fitness (log2 ratio) -2 -1 0 1 2at 3800.481 kb on - strandat 3800.547 kb on + strandat 3800.547 kb on + strandat 3800.547 kb on + strandat 3800.555 kb on - strandat 3800.593 kb on + strand, within BWI76_RS18285at 3800.601 kb on - strand, within BWI76_RS18285at 3800.612 kb on + strand, within BWI76_RS18285at 3800.656 kb on + strand, within BWI76_RS18285at 3800.660 kb on - strand, within BWI76_RS18285at 3800.663 kb on + strand, within BWI76_RS18285at 3800.663 kb on + strand, within BWI76_RS18285at 3800.663 kb on + strand, within BWI76_RS18285at 3800.663 kb on + strand, within BWI76_RS18285at 3800.663 kb on + strand, within BWI76_RS18285at 3800.663 kb on + strand, within BWI76_RS18285at 3800.663 kb on + strand, within BWI76_RS18285at 3800.663 kb on + strand, within BWI76_RS18285at 3800.663 kb on + strand, within BWI76_RS18285at 3800.671 kb on - strand, within BWI76_RS18285at 3800.671 kb on - strand, within BWI76_RS18285at 3800.699 kb on + strand, within BWI76_RS18285at 3800.699 kb on + strand, within BWI76_RS18285at 3800.699 kb on + strand, within BWI76_RS18285at 3800.707 kb on - strand, within BWI76_RS18285at 3800.722 kb on + strand, within BWI76_RS18285at 3800.743 kb on + strand, within BWI76_RS18285at 3800.743 kb on + strand, within BWI76_RS18285at 3800.751 kb on - strand, within BWI76_RS18285at 3800.766 kb on + strand, within BWI76_RS18285at 3800.766 kb on + strand, within BWI76_RS18285at 3800.766 kb on + strand, within BWI76_RS18285at 3800.791 kb on + strand, within BWI76_RS18285at 3800.815 kb on + strand, within BWI76_RS18285at 3800.839 kb on + strand, within BWI76_RS18285at 3800.839 kb on + strand, within BWI76_RS18285at 3800.871 kb on + strand, within BWI76_RS18285at 3800.871 kb on + strand, within BWI76_RS18285at 3800.871 kb on + strand, within BWI76_RS18285at 3800.879 kb on + strand, within BWI76_RS18285at 3800.879 kb on + strand, within BWI76_RS18285at 3800.879 kb on + strand, within BWI76_RS18285at 3800.879 kb on + strand, within BWI76_RS18285at 3800.879 kb on + strand, within BWI76_RS18285at 3800.879 kb on + strand, within BWI76_RS18285at 3800.879 kb on + strand, within BWI76_RS18285at 3800.879 kb on - strand, within BWI76_RS18285at 3800.879 kb on - strand, within BWI76_RS18285at 3800.879 kb on - strand, within BWI76_RS18285at 3800.881 kb on + strand, within BWI76_RS18285at 3800.887 kb on - strand, within BWI76_RS18285at 3800.887 kb on - strand, within BWI76_RS18285at 3800.887 kb on - strand, within BWI76_RS18285at 3800.889 kb on - strand, within BWI76_RS18285at 3800.896 kb on + strand, within BWI76_RS18285at 3800.907 kb on + strand, within BWI76_RS18285at 3800.915 kb on - strand, within BWI76_RS18285at 3800.926 kb on + strand, within BWI76_RS18285at 3800.939 kb on - strandat 3800.990 kb on - strandat 3801.031 kb on - strandat 3801.031 kb on - strandat 3801.031 kb on - strandat 3801.031 kb on - strandat 3801.087 kb on - strand, within BWI76_RS18290at 3801.087 kb on - strand, within BWI76_RS18290at 3801.087 kb on - strand, within BWI76_RS18290at 3801.100 kb on - strand, within BWI76_RS18290at 3801.129 kb on + strand, within BWI76_RS18290at 3801.137 kb on - strand, within BWI76_RS18290at 3801.221 kb on + strand, within BWI76_RS18290at 3801.221 kb on + strand, within BWI76_RS18290at 3801.221 kb on + strand, within BWI76_RS18290at 3801.221 kb on + strand, within BWI76_RS18290at 3801.229 kb on - strand, within BWI76_RS18290at 3801.229 kb on - strand, within BWI76_RS18290at 3801.229 kb on - strand, within BWI76_RS18290at 3801.229 kb on - strand, within BWI76_RS18290at 3801.229 kb on - strand, within BWI76_RS18290at 3801.229 kb on - strand, within BWI76_RS18290at 3801.229 kb on - strand, within BWI76_RS18290at 3801.229 kb on - strand, within BWI76_RS18290at 3801.229 kb on - strand, within BWI76_RS18290at 3801.250 kb on + strand, within BWI76_RS18290at 3801.691 kb on + strand, within BWI76_RS18295at 3801.873 kb on - strand, within BWI76_RS18295at 3801.888 kb on + strand, within BWI76_RS18295at 3801.978 kb on - strand, within BWI76_RS18295at 3802.015 kb on + strand, within BWI76_RS18295at 3802.208 kb on - strand, within BWI76_RS18295at 3802.237 kb on + strand, within BWI76_RS18295at 3802.439 kb on + strand, within BWI76_RS18295at 3802.481 kb on + strand, within BWI76_RS18295at 3802.672 kb on - strandat 3802.788 kb on - strand, within BWI76_RS18300at 3802.839 kb on + strand, within BWI76_RS18300at 3803.016 kb on - strand, within BWI76_RS18300at 3803.249 kb on - strand, within BWI76_RS18300

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.1 mg/ml
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3,800,481 - +0.8
3,800,547 + -0.4
3,800,547 + +0.2
3,800,547 + -1.1
3,800,555 - +1.1
3,800,593 + BWI76_RS18285 0.17 +0.3
3,800,601 - BWI76_RS18285 0.18 +2.5
3,800,612 + BWI76_RS18285 0.21 +1.3
3,800,656 + BWI76_RS18285 0.30 -1.0
3,800,660 - BWI76_RS18285 0.30 -0.4
3,800,663 + BWI76_RS18285 0.31 +0.2
3,800,663 + BWI76_RS18285 0.31 -1.3
3,800,663 + BWI76_RS18285 0.31 -0.8
3,800,663 + BWI76_RS18285 0.31 -1.0
3,800,663 + BWI76_RS18285 0.31 -1.7
3,800,663 + BWI76_RS18285 0.31 +0.8
3,800,663 + BWI76_RS18285 0.31 -0.6
3,800,663 + BWI76_RS18285 0.31 +0.3
3,800,663 + BWI76_RS18285 0.31 -0.2
3,800,671 - BWI76_RS18285 0.33 -0.1
3,800,671 - BWI76_RS18285 0.33 +0.6
3,800,699 + BWI76_RS18285 0.38 +1.2
3,800,699 + BWI76_RS18285 0.38 -0.2
3,800,699 + BWI76_RS18285 0.38 +0.1
3,800,707 - BWI76_RS18285 0.40 -0.8
3,800,722 + BWI76_RS18285 0.43 -0.7
3,800,743 + BWI76_RS18285 0.47 -0.3
3,800,743 + BWI76_RS18285 0.47 -0.7
3,800,751 - BWI76_RS18285 0.49 +0.3
3,800,766 + BWI76_RS18285 0.52 -0.3
3,800,766 + BWI76_RS18285 0.52 -0.8
3,800,766 + BWI76_RS18285 0.52 -0.5
3,800,791 + BWI76_RS18285 0.57 +0.7
3,800,815 + BWI76_RS18285 0.61 -0.4
3,800,839 + BWI76_RS18285 0.66 +0.6
3,800,839 + BWI76_RS18285 0.66 -1.3
3,800,871 + BWI76_RS18285 0.73 +0.6
3,800,871 + BWI76_RS18285 0.73 -0.4
3,800,871 + BWI76_RS18285 0.73 -1.2
3,800,879 + BWI76_RS18285 0.74 -0.1
3,800,879 + BWI76_RS18285 0.74 -0.6
3,800,879 + BWI76_RS18285 0.74 -0.6
3,800,879 + BWI76_RS18285 0.74 +1.6
3,800,879 + BWI76_RS18285 0.74 +0.8
3,800,879 + BWI76_RS18285 0.74 -0.3
3,800,879 + BWI76_RS18285 0.74 -0.8
3,800,879 - BWI76_RS18285 0.74 +0.7
3,800,879 - BWI76_RS18285 0.74 -0.2
3,800,879 - BWI76_RS18285 0.74 -1.0
3,800,881 + BWI76_RS18285 0.75 -0.8
3,800,887 - BWI76_RS18285 0.76 -1.0
3,800,887 - BWI76_RS18285 0.76 -0.1
3,800,887 - BWI76_RS18285 0.76 +1.1
3,800,889 - BWI76_RS18285 0.76 -0.0
3,800,896 + BWI76_RS18285 0.78 -0.9
3,800,907 + BWI76_RS18285 0.80 -1.0
3,800,915 - BWI76_RS18285 0.82 +2.4
3,800,926 + BWI76_RS18285 0.84 -0.2
3,800,939 - +0.2
3,800,990 - +1.0
3,801,031 - -0.5
3,801,031 - +0.1
3,801,031 - +0.6
3,801,031 - +0.4
3,801,087 - BWI76_RS18290 0.18 +0.3
3,801,087 - BWI76_RS18290 0.18 +0.9
3,801,087 - BWI76_RS18290 0.18 -1.3
3,801,100 - BWI76_RS18290 0.24 +1.0
3,801,129 + BWI76_RS18290 0.36 +0.1
3,801,137 - BWI76_RS18290 0.39 -0.3
3,801,221 + BWI76_RS18290 0.74 +0.5
3,801,221 + BWI76_RS18290 0.74 +0.4
3,801,221 + BWI76_RS18290 0.74 +0.4
3,801,221 + BWI76_RS18290 0.74 -0.2
3,801,229 - BWI76_RS18290 0.78 -0.4
3,801,229 - BWI76_RS18290 0.78 -0.7
3,801,229 - BWI76_RS18290 0.78 -0.8
3,801,229 - BWI76_RS18290 0.78 +1.2
3,801,229 - BWI76_RS18290 0.78 -0.1
3,801,229 - BWI76_RS18290 0.78 -0.5
3,801,229 - BWI76_RS18290 0.78 +1.5
3,801,229 - BWI76_RS18290 0.78 +1.2
3,801,229 - BWI76_RS18290 0.78 +0.1
3,801,250 + BWI76_RS18290 0.86 +1.4
3,801,691 + BWI76_RS18295 0.18 -1.3
3,801,873 - BWI76_RS18295 0.33 -2.2
3,801,888 + BWI76_RS18295 0.34 -1.3
3,801,978 - BWI76_RS18295 0.41 -0.3
3,802,015 + BWI76_RS18295 0.44 -2.0
3,802,208 - BWI76_RS18295 0.60 -1.0
3,802,237 + BWI76_RS18295 0.63 -0.9
3,802,439 + BWI76_RS18295 0.79 -1.6
3,802,481 + BWI76_RS18295 0.83 -0.8
3,802,672 - -1.1
3,802,788 - BWI76_RS18300 0.10 +0.5
3,802,839 + BWI76_RS18300 0.18 -0.2
3,803,016 - BWI76_RS18300 0.45 -0.6
3,803,249 - BWI76_RS18300 0.79 -1.1

Or see this region's nucleotide sequence