Experiment: Paraquat dichloride 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS15395 and BWI76_RS15400 are separated by 593 nucleotides BWI76_RS15400 and BWI76_RS15405 are separated by 195 nucleotides
BWI76_RS15395: BWI76_RS15395 - DUF1852 domain-containing protein, at 3,224,905 to 3,225,882
_RS15395
BWI76_RS15400: BWI76_RS15400 - anti-RssB factor, at 3,226,476 to 3,226,787
_RS15400
BWI76_RS15405: BWI76_RS15405 - diguanylate phosphodiesterase, at 3,226,983 to 3,228,200
_RS15405
Position (kb)
3226
3227 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3225.501 kb on + strand, within BWI76_RS15395 at 3225.513 kb on + strand, within BWI76_RS15395 at 3225.635 kb on + strand, within BWI76_RS15395 at 3225.635 kb on + strand, within BWI76_RS15395 at 3225.643 kb on - strand, within BWI76_RS15395 at 3225.697 kb on - strand, within BWI76_RS15395 at 3225.697 kb on - strand, within BWI76_RS15395 at 3225.735 kb on - strand at 3225.748 kb on - strand, within BWI76_RS15395 at 3225.751 kb on - strand, within BWI76_RS15395 at 3225.895 kb on - strand at 3225.962 kb on - strand at 3225.995 kb on - strand at 3226.008 kb on - strand at 3226.012 kb on + strand at 3226.014 kb on + strand at 3226.020 kb on - strand at 3226.020 kb on - strand at 3226.086 kb on - strand at 3226.088 kb on - strand at 3226.097 kb on + strand at 3226.196 kb on + strand at 3226.221 kb on - strand at 3226.254 kb on - strand at 3226.261 kb on + strand at 3226.269 kb on - strand at 3226.270 kb on + strand at 3226.270 kb on + strand at 3226.270 kb on + strand at 3226.290 kb on - strand at 3226.411 kb on - strand at 3226.469 kb on - strand at 3226.503 kb on - strand at 3226.550 kb on + strand at 3226.550 kb on + strand, within BWI76_RS15400 at 3226.558 kb on - strand, within BWI76_RS15400 at 3226.561 kb on + strand, within BWI76_RS15400 at 3226.562 kb on + strand, within BWI76_RS15400 at 3226.562 kb on + strand, within BWI76_RS15400 at 3226.562 kb on + strand at 3226.570 kb on - strand, within BWI76_RS15400 at 3226.579 kb on - strand, within BWI76_RS15400 at 3226.648 kb on + strand, within BWI76_RS15400 at 3226.744 kb on - strand, within BWI76_RS15400 at 3226.809 kb on - strand at 3226.835 kb on + strand at 3226.835 kb on + strand at 3226.855 kb on + strand at 3226.858 kb on - strand at 3226.875 kb on + strand at 3226.908 kb on + strand at 3226.957 kb on - strand at 3227.013 kb on - strand at 3227.088 kb on - strand at 3227.099 kb on + strand at 3227.102 kb on - strand at 3227.107 kb on - strand, within BWI76_RS15405 at 3227.180 kb on + strand, within BWI76_RS15405 at 3227.180 kb on + strand, within BWI76_RS15405 at 3227.180 kb on + strand, within BWI76_RS15405 at 3227.180 kb on + strand, within BWI76_RS15405 at 3227.180 kb on + strand, within BWI76_RS15405 at 3227.180 kb on + strand, within BWI76_RS15405 at 3227.180 kb on + strand, within BWI76_RS15405 at 3227.188 kb on - strand, within BWI76_RS15405 at 3227.188 kb on - strand, within BWI76_RS15405 at 3227.188 kb on - strand, within BWI76_RS15405 at 3227.188 kb on - strand, within BWI76_RS15405 at 3227.188 kb on - strand, within BWI76_RS15405 at 3227.188 kb on - strand, within BWI76_RS15405 at 3227.188 kb on - strand, within BWI76_RS15405 at 3227.188 kb on - strand, within BWI76_RS15405 at 3227.188 kb on - strand, within BWI76_RS15405 at 3227.188 kb on - strand, within BWI76_RS15405 at 3227.188 kb on - strand, within BWI76_RS15405 at 3227.188 kb on - strand, within BWI76_RS15405 at 3227.188 kb on - strand, within BWI76_RS15405 at 3227.188 kb on - strand, within BWI76_RS15405 at 3227.188 kb on - strand, within BWI76_RS15405 at 3227.301 kb on + strand, within BWI76_RS15405 at 3227.378 kb on + strand, within BWI76_RS15405 at 3227.383 kb on + strand, within BWI76_RS15405 at 3227.383 kb on + strand, within BWI76_RS15405 at 3227.388 kb on + strand, within BWI76_RS15405 at 3227.441 kb on - strand, within BWI76_RS15405 at 3227.531 kb on - strand, within BWI76_RS15405 at 3227.576 kb on - strand, within BWI76_RS15405 at 3227.599 kb on + strand at 3227.610 kb on - strand, within BWI76_RS15405 at 3227.630 kb on - strand, within BWI76_RS15405 at 3227.630 kb on - strand, within BWI76_RS15405 at 3227.729 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.1 mg/ml remove 3,225,501 + BWI76_RS15395 0.61 -0.1 3,225,513 + BWI76_RS15395 0.62 +0.9 3,225,635 + BWI76_RS15395 0.75 +0.8 3,225,635 + BWI76_RS15395 0.75 +0.3 3,225,643 - BWI76_RS15395 0.75 +2.2 3,225,697 - BWI76_RS15395 0.81 +0.5 3,225,697 - BWI76_RS15395 0.81 +1.0 3,225,735 - +1.8 3,225,748 - BWI76_RS15395 0.86 +0.3 3,225,751 - BWI76_RS15395 0.87 +1.4 3,225,895 - +1.3 3,225,962 - +0.5 3,225,995 - +0.5 3,226,008 - -0.5 3,226,012 + -0.4 3,226,014 + +1.1 3,226,020 - +1.0 3,226,020 - -0.1 3,226,086 - -1.0 3,226,088 - +2.8 3,226,097 + +1.1 3,226,196 + +0.6 3,226,221 - +0.8 3,226,254 - +0.3 3,226,261 + -1.0 3,226,269 - +0.2 3,226,270 + -0.2 3,226,270 + -0.4 3,226,270 + -0.8 3,226,290 - -0.9 3,226,411 - -1.6 3,226,469 - +0.8 3,226,503 - -1.4 3,226,550 + +3.4 3,226,550 + BWI76_RS15400 0.24 -1.0 3,226,558 - BWI76_RS15400 0.26 -0.4 3,226,561 + BWI76_RS15400 0.27 +0.8 3,226,562 + BWI76_RS15400 0.28 +1.1 3,226,562 + BWI76_RS15400 0.28 +0.2 3,226,562 + +0.8 3,226,570 - BWI76_RS15400 0.30 +0.5 3,226,579 - BWI76_RS15400 0.33 +0.3 3,226,648 + BWI76_RS15400 0.55 -1.0 3,226,744 - BWI76_RS15400 0.86 -0.7 3,226,809 - -0.8 3,226,835 + +1.4 3,226,835 + +0.3 3,226,855 + -0.1 3,226,858 - -0.3 3,226,875 + -0.2 3,226,908 + -0.1 3,226,957 - -0.2 3,227,013 - +0.5 3,227,088 - +0.0 3,227,099 + +0.0 3,227,102 - -0.5 3,227,107 - BWI76_RS15405 0.10 -0.2 3,227,180 + BWI76_RS15405 0.16 +2.3 3,227,180 + BWI76_RS15405 0.16 -0.3 3,227,180 + BWI76_RS15405 0.16 -0.2 3,227,180 + BWI76_RS15405 0.16 -0.2 3,227,180 + BWI76_RS15405 0.16 +1.8 3,227,180 + BWI76_RS15405 0.16 -1.6 3,227,180 + BWI76_RS15405 0.16 -1.4 3,227,188 - BWI76_RS15405 0.17 +0.1 3,227,188 - BWI76_RS15405 0.17 -0.3 3,227,188 - BWI76_RS15405 0.17 -1.1 3,227,188 - BWI76_RS15405 0.17 -0.5 3,227,188 - BWI76_RS15405 0.17 -0.8 3,227,188 - BWI76_RS15405 0.17 -2.2 3,227,188 - BWI76_RS15405 0.17 +1.2 3,227,188 - BWI76_RS15405 0.17 +0.2 3,227,188 - BWI76_RS15405 0.17 +1.0 3,227,188 - BWI76_RS15405 0.17 -1.3 3,227,188 - BWI76_RS15405 0.17 -0.2 3,227,188 - BWI76_RS15405 0.17 -1.0 3,227,188 - BWI76_RS15405 0.17 -0.0 3,227,188 - BWI76_RS15405 0.17 +0.8 3,227,188 - BWI76_RS15405 0.17 -0.6 3,227,301 + BWI76_RS15405 0.26 +0.5 3,227,378 + BWI76_RS15405 0.32 +0.1 3,227,383 + BWI76_RS15405 0.33 -1.1 3,227,383 + BWI76_RS15405 0.33 +0.1 3,227,388 + BWI76_RS15405 0.33 +2.8 3,227,441 - BWI76_RS15405 0.38 +0.3 3,227,531 - BWI76_RS15405 0.45 +0.8 3,227,576 - BWI76_RS15405 0.49 -0.8 3,227,599 + +2.4 3,227,610 - BWI76_RS15405 0.51 -1.2 3,227,630 - BWI76_RS15405 0.53 +0.2 3,227,630 - BWI76_RS15405 0.53 +1.1 3,227,729 + +1.8
Or see this region's nucleotide sequence