Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS14055

Experiment: Paraquat dichloride 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS14050 and BWI76_RS14055 are separated by 184 nucleotidesBWI76_RS14055 and BWI76_RS14060 are separated by 168 nucleotides BWI76_RS14050: BWI76_RS14050 - AP endonuclease, family 2, at 2,936,169 to 2,937,092 _RS14050 BWI76_RS14055: BWI76_RS14055 - LacI family transcriptional regulator, at 2,937,277 to 2,938,311 _RS14055 BWI76_RS14060: BWI76_RS14060 - secretory lipase, at 2,938,480 to 2,939,622 _RS14060 Position (kb) 2937 2938 2939Strain fitness (log2 ratio) -1 0 1 2at 2936.408 kb on + strand, within BWI76_RS14050at 2936.855 kb on + strand, within BWI76_RS14050at 2937.427 kb on + strand, within BWI76_RS14055at 2937.617 kb on - strand, within BWI76_RS14055at 2937.626 kb on + strand, within BWI76_RS14055at 2937.671 kb on - strandat 2937.853 kb on + strand, within BWI76_RS14055at 2937.856 kb on + strand, within BWI76_RS14055at 2937.863 kb on - strand, within BWI76_RS14055at 2937.888 kb on - strand, within BWI76_RS14055at 2938.249 kb on - strandat 2938.421 kb on + strandat 2938.452 kb on - strandat 2938.492 kb on - strandat 2938.525 kb on - strandat 2938.801 kb on - strand, within BWI76_RS14060at 2938.858 kb on - strand, within BWI76_RS14060at 2939.004 kb on + strand, within BWI76_RS14060at 2939.229 kb on + strand, within BWI76_RS14060

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.1 mg/ml
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2,936,408 + BWI76_RS14050 0.26 +1.1
2,936,855 + BWI76_RS14050 0.74 -1.4
2,937,427 + BWI76_RS14055 0.14 +1.6
2,937,617 - BWI76_RS14055 0.33 -0.6
2,937,626 + BWI76_RS14055 0.34 -0.9
2,937,671 - +0.2
2,937,853 + BWI76_RS14055 0.56 +1.3
2,937,856 + BWI76_RS14055 0.56 +0.9
2,937,863 - BWI76_RS14055 0.57 -0.5
2,937,888 - BWI76_RS14055 0.59 +2.5
2,938,249 - +0.8
2,938,421 + -0.7
2,938,452 - -0.8
2,938,492 - +0.6
2,938,525 - -1.5
2,938,801 - BWI76_RS14060 0.28 -1.7
2,938,858 - BWI76_RS14060 0.33 -0.1
2,939,004 + BWI76_RS14060 0.46 -0.3
2,939,229 + BWI76_RS14060 0.66 -0.7

Or see this region's nucleotide sequence