Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13745

Experiment: Paraquat dichloride 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13740 and BWI76_RS13745 are separated by 11 nucleotidesBWI76_RS13745 and BWI76_RS13750 overlap by 8 nucleotidesBWI76_RS13750 and BWI76_RS13755 are separated by 41 nucleotides BWI76_RS13740: BWI76_RS13740 - formate dehydrogenase-N subunit alpha, at 2,864,974 to 2,867,385 _RS13740 BWI76_RS13745: BWI76_RS13745 - formate dehydrogenase subunit beta, at 2,867,397 to 2,868,281 _RS13745 BWI76_RS13750: BWI76_RS13750 - formate dehydrogenase, at 2,868,274 to 2,868,930 _RS13750 BWI76_RS13755: BWI76_RS13755 - hypothetical protein, at 2,868,972 to 2,869,295 _RS13755 Position (kb) 2867 2868 2869Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2866.502 kb on + strand, within BWI76_RS13740at 2866.659 kb on - strand, within BWI76_RS13740at 2866.671 kb on + strand, within BWI76_RS13740at 2866.773 kb on + strand, within BWI76_RS13740at 2866.799 kb on + strand, within BWI76_RS13740at 2867.054 kb on + strand, within BWI76_RS13740at 2867.220 kb on + strandat 2867.235 kb on + strandat 2867.298 kb on - strandat 2867.372 kb on - strandat 2867.449 kb on + strandat 2867.537 kb on + strand, within BWI76_RS13745at 2867.545 kb on - strand, within BWI76_RS13745at 2867.589 kb on - strand, within BWI76_RS13745at 2868.041 kb on + strand, within BWI76_RS13745at 2868.076 kb on + strand, within BWI76_RS13745at 2868.094 kb on + strand, within BWI76_RS13745at 2868.114 kb on - strand, within BWI76_RS13745at 2868.358 kb on - strand, within BWI76_RS13750at 2868.403 kb on + strand, within BWI76_RS13750at 2868.411 kb on - strand, within BWI76_RS13750at 2868.556 kb on - strand, within BWI76_RS13750at 2868.573 kb on + strand, within BWI76_RS13750at 2868.573 kb on + strand, within BWI76_RS13750at 2868.573 kb on + strand, within BWI76_RS13750at 2868.654 kb on + strand, within BWI76_RS13750at 2868.711 kb on + strand, within BWI76_RS13750at 2868.719 kb on + strand, within BWI76_RS13750at 2868.719 kb on + strand, within BWI76_RS13750at 2868.824 kb on - strand, within BWI76_RS13750at 2868.827 kb on + strand, within BWI76_RS13750at 2868.827 kb on + strand, within BWI76_RS13750at 2868.830 kb on - strand, within BWI76_RS13750at 2868.865 kb on - strandat 2868.883 kb on + strandat 2868.886 kb on - strandat 2868.931 kb on + strandat 2868.960 kb on + strandat 2868.968 kb on - strandat 2868.970 kb on + strandat 2868.978 kb on - strandat 2869.189 kb on - strand, within BWI76_RS13755at 2869.191 kb on + strand, within BWI76_RS13755at 2869.264 kb on + strandat 2869.265 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.1 mg/ml
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2,866,502 + BWI76_RS13740 0.63 -0.8
2,866,659 - BWI76_RS13740 0.70 +0.0
2,866,671 + BWI76_RS13740 0.70 +0.1
2,866,773 + BWI76_RS13740 0.75 -0.4
2,866,799 + BWI76_RS13740 0.76 +0.3
2,867,054 + BWI76_RS13740 0.86 -0.4
2,867,220 + -0.7
2,867,235 + +0.9
2,867,298 - -0.9
2,867,372 - +0.6
2,867,449 + +0.2
2,867,537 + BWI76_RS13745 0.16 +1.7
2,867,545 - BWI76_RS13745 0.17 -0.2
2,867,589 - BWI76_RS13745 0.22 -0.8
2,868,041 + BWI76_RS13745 0.73 +0.1
2,868,076 + BWI76_RS13745 0.77 -1.7
2,868,094 + BWI76_RS13745 0.79 -2.4
2,868,114 - BWI76_RS13745 0.81 -0.3
2,868,358 - BWI76_RS13750 0.13 +0.5
2,868,403 + BWI76_RS13750 0.20 -0.4
2,868,411 - BWI76_RS13750 0.21 -1.2
2,868,556 - BWI76_RS13750 0.43 -1.1
2,868,573 + BWI76_RS13750 0.46 +0.6
2,868,573 + BWI76_RS13750 0.46 +0.7
2,868,573 + BWI76_RS13750 0.46 +0.0
2,868,654 + BWI76_RS13750 0.58 -0.7
2,868,711 + BWI76_RS13750 0.67 +0.3
2,868,719 + BWI76_RS13750 0.68 -0.1
2,868,719 + BWI76_RS13750 0.68 +0.3
2,868,824 - BWI76_RS13750 0.84 +3.1
2,868,827 + BWI76_RS13750 0.84 +0.8
2,868,827 + BWI76_RS13750 0.84 +0.4
2,868,830 - BWI76_RS13750 0.85 -1.0
2,868,865 - +0.3
2,868,883 + -1.5
2,868,886 - +1.0
2,868,931 + +0.5
2,868,960 + +2.8
2,868,968 - +1.1
2,868,970 + +0.3
2,868,978 - -1.4
2,869,189 - BWI76_RS13755 0.67 +0.8
2,869,191 + BWI76_RS13755 0.68 +1.7
2,869,264 + -1.7
2,869,265 + +0.9

Or see this region's nucleotide sequence