Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS11985

Experiment: Paraquat dichloride 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS11980 and BWI76_RS11985 are separated by 72 nucleotidesBWI76_RS11985 and BWI76_RS11990 are separated by 177 nucleotides BWI76_RS11980: BWI76_RS11980 - DeoR family transcriptional regulator, at 2,521,043 to 2,521,792 _RS11980 BWI76_RS11985: BWI76_RS11985 - hypothetical protein, at 2,521,865 to 2,522,047 _RS11985 BWI76_RS11990: BWI76_RS11990 - exoribonuclease II, at 2,522,225 to 2,524,159 _RS11990 Position (kb) 2521 2522 2523Strain fitness (log2 ratio) -3 -2 -1 0 1at 2520.865 kb on + strandat 2520.880 kb on + strandat 2520.888 kb on - strandat 2520.889 kb on - strandat 2520.889 kb on - strandat 2520.889 kb on - strandat 2520.889 kb on - strandat 2520.889 kb on - strandat 2520.900 kb on + strandat 2520.900 kb on + strandat 2520.900 kb on + strandat 2520.900 kb on + strandat 2520.908 kb on - strandat 2520.908 kb on - strandat 2520.908 kb on - strandat 2520.908 kb on - strandat 2520.923 kb on - strandat 2520.923 kb on - strandat 2520.938 kb on - strandat 2521.020 kb on + strandat 2521.023 kb on - strandat 2521.030 kb on + strandat 2521.041 kb on + strandat 2521.041 kb on + strandat 2521.068 kb on + strandat 2521.356 kb on + strand, within BWI76_RS11980at 2521.622 kb on - strand, within BWI76_RS11980at 2521.805 kb on + strandat 2521.881 kb on + strandat 2521.881 kb on + strandat 2521.881 kb on + strandat 2521.881 kb on + strandat 2521.889 kb on - strand, within BWI76_RS11985at 2521.889 kb on - strand, within BWI76_RS11985at 2521.889 kb on - strand, within BWI76_RS11985at 2521.978 kb on - strand, within BWI76_RS11985at 2522.049 kb on + strandat 2522.057 kb on - strandat 2522.057 kb on - strandat 2522.198 kb on + strandat 2522.198 kb on + strandat 2522.206 kb on - strandat 2522.588 kb on - strand, within BWI76_RS11990at 2522.892 kb on - strand, within BWI76_RS11990

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.1 mg/ml
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2,520,865 + -0.7
2,520,880 + -3.4
2,520,888 - +0.2
2,520,889 - +0.1
2,520,889 - -0.1
2,520,889 - +0.4
2,520,889 - -0.3
2,520,889 - -0.6
2,520,900 + -3.1
2,520,900 + +0.5
2,520,900 + -1.5
2,520,900 + +1.3
2,520,908 - -0.5
2,520,908 - -0.2
2,520,908 - -0.1
2,520,908 - -0.6
2,520,923 - +0.8
2,520,923 - -0.8
2,520,938 - +0.2
2,521,020 + -0.8
2,521,023 - -0.4
2,521,030 + -0.6
2,521,041 + -0.7
2,521,041 + -0.1
2,521,068 + -0.6
2,521,356 + BWI76_RS11980 0.42 +0.3
2,521,622 - BWI76_RS11980 0.77 -1.0
2,521,805 + -1.1
2,521,881 + -0.7
2,521,881 + -1.1
2,521,881 + +0.6
2,521,881 + +0.3
2,521,889 - BWI76_RS11985 0.13 +0.0
2,521,889 - BWI76_RS11985 0.13 -1.8
2,521,889 - BWI76_RS11985 0.13 -1.0
2,521,978 - BWI76_RS11985 0.62 -2.0
2,522,049 + -1.8
2,522,057 - -0.3
2,522,057 - +0.5
2,522,198 + +0.5
2,522,198 + -0.6
2,522,206 - +1.0
2,522,588 - BWI76_RS11990 0.19 -1.2
2,522,892 - BWI76_RS11990 0.34 -0.5

Or see this region's nucleotide sequence