Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS11005

Experiment: Paraquat dichloride 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS10995 and BWI76_RS11000 are separated by 135 nucleotidesBWI76_RS11000 and BWI76_RS11005 are separated by 65 nucleotidesBWI76_RS11005 and BWI76_RS11010 are separated by 229 nucleotidesBWI76_RS11010 and BWI76_RS11015 are separated by 9 nucleotides BWI76_RS10995: BWI76_RS10995 - lipoprotein, at 2,319,499 to 2,320,059 _RS10995 BWI76_RS11000: BWI76_RS11000 - glutaredoxin 2, at 2,320,195 to 2,320,842 _RS11000 BWI76_RS11005: BWI76_RS11005 - MFS transporter, at 2,320,908 to 2,322,116 _RS11005 BWI76_RS11010: BWI76_RS11010 - 30S ribosomal protein S5 alanine N-acetyltransferase, at 2,322,346 to 2,322,930 _RS11010 BWI76_RS11015: BWI76_RS11015 - hypothetical protein, at 2,322,940 to 2,323,587 _RS11015 Position (kb) 2320 2321 2322 2323Strain fitness (log2 ratio) -1 0 1 2at 2319.947 kb on - strand, within BWI76_RS10995at 2319.989 kb on + strand, within BWI76_RS10995at 2320.007 kb on + strandat 2320.007 kb on - strandat 2320.020 kb on - strandat 2320.176 kb on + strandat 2320.363 kb on - strandat 2320.363 kb on - strand, within BWI76_RS11000at 2320.742 kb on + strand, within BWI76_RS11000at 2320.744 kb on + strand, within BWI76_RS11000at 2320.761 kb on + strand, within BWI76_RS11000at 2320.808 kb on - strandat 2321.119 kb on - strand, within BWI76_RS11005at 2321.203 kb on - strand, within BWI76_RS11005at 2321.340 kb on - strand, within BWI76_RS11005at 2321.683 kb on - strand, within BWI76_RS11005at 2321.731 kb on - strand, within BWI76_RS11005at 2321.737 kb on + strand, within BWI76_RS11005at 2321.965 kb on - strand, within BWI76_RS11005at 2322.060 kb on + strandat 2322.119 kb on - strandat 2322.155 kb on - strandat 2322.298 kb on + strandat 2322.307 kb on - strandat 2322.512 kb on - strand, within BWI76_RS11010at 2322.708 kb on - strand, within BWI76_RS11010at 2322.751 kb on + strand, within BWI76_RS11010at 2323.022 kb on - strand, within BWI76_RS11015at 2323.042 kb on - strand, within BWI76_RS11015

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.1 mg/ml
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2,319,947 - BWI76_RS10995 0.80 +0.5
2,319,989 + BWI76_RS10995 0.87 -0.3
2,320,007 + -0.6
2,320,007 - -0.5
2,320,020 - -0.5
2,320,176 + +0.2
2,320,363 - +1.4
2,320,363 - BWI76_RS11000 0.26 +0.6
2,320,742 + BWI76_RS11000 0.84 -0.7
2,320,744 + BWI76_RS11000 0.85 +0.3
2,320,761 + BWI76_RS11000 0.87 -1.2
2,320,808 - +0.6
2,321,119 - BWI76_RS11005 0.17 -1.1
2,321,203 - BWI76_RS11005 0.24 -0.8
2,321,340 - BWI76_RS11005 0.36 -0.7
2,321,683 - BWI76_RS11005 0.64 -0.4
2,321,731 - BWI76_RS11005 0.68 -0.6
2,321,737 + BWI76_RS11005 0.69 -1.1
2,321,965 - BWI76_RS11005 0.87 -0.3
2,322,060 + +0.1
2,322,119 - +0.1
2,322,155 - +0.4
2,322,298 + +0.9
2,322,307 - +1.5
2,322,512 - BWI76_RS11010 0.28 +2.0
2,322,708 - BWI76_RS11010 0.62 -0.7
2,322,751 + BWI76_RS11010 0.69 +0.2
2,323,022 - BWI76_RS11015 0.13 +1.6
2,323,042 - BWI76_RS11015 0.16 +0.6

Or see this region's nucleotide sequence