Experiment: Paraquat dichloride 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS10905 and BWI76_RS10910 are separated by 301 nucleotides BWI76_RS10910 and BWI76_RS10915 are separated by 89 nucleotides BWI76_RS10915 and BWI76_RS10920 are separated by 88 nucleotides BWI76_RS10920 and BWI76_RS10925 are separated by 36 nucleotides
BWI76_RS10905: BWI76_RS10905 - hypothetical protein, at 2,303,769 to 2,304,263
_RS10905
BWI76_RS10910: BWI76_RS10910 - hypothetical protein, at 2,304,565 to 2,304,870
_RS10910
BWI76_RS10915: BWI76_RS10915 - O-acetyl-ADP-ribose deacetylase, at 2,304,960 to 2,305,514
_RS10915
BWI76_RS10920: BWI76_RS10920 - putative TetR family transcriptional regulator, at 2,305,603 to 2,306,151
_RS10920
BWI76_RS10925: BWI76_RS10925 - glucans biosynthesis protein C, at 2,306,188 to 2,307,348
_RS10925
Position (kb)
2304
2305
2306 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2304.027 kb on + strand, within BWI76_RS10905 at 2304.056 kb on - strand, within BWI76_RS10905 at 2304.163 kb on - strand, within BWI76_RS10905 at 2304.209 kb on + strand, within BWI76_RS10905 at 2304.289 kb on + strand at 2304.303 kb on + strand at 2304.312 kb on - strand at 2304.342 kb on - strand at 2304.517 kb on - strand at 2304.547 kb on + strand at 2304.557 kb on + strand at 2304.565 kb on - strand at 2304.609 kb on + strand, within BWI76_RS10910 at 2304.617 kb on - strand, within BWI76_RS10910 at 2304.623 kb on + strand, within BWI76_RS10910 at 2304.704 kb on - strand at 2304.847 kb on + strand at 2304.847 kb on + strand at 2304.855 kb on - strand at 2304.865 kb on + strand at 2304.865 kb on + strand at 2304.865 kb on + strand at 2304.871 kb on + strand at 2304.941 kb on + strand at 2304.971 kb on + strand at 2304.971 kb on + strand at 2305.095 kb on - strand, within BWI76_RS10915 at 2305.114 kb on - strand, within BWI76_RS10915 at 2305.130 kb on + strand, within BWI76_RS10915 at 2305.138 kb on - strand, within BWI76_RS10915 at 2305.155 kb on - strand, within BWI76_RS10915 at 2305.350 kb on - strand, within BWI76_RS10915 at 2305.417 kb on - strand, within BWI76_RS10915 at 2305.515 kb on - strand at 2305.631 kb on - strand at 2305.631 kb on - strand at 2305.644 kb on + strand at 2305.682 kb on + strand, within BWI76_RS10920 at 2305.694 kb on + strand, within BWI76_RS10920 at 2305.809 kb on - strand, within BWI76_RS10920 at 2305.932 kb on - strand, within BWI76_RS10920 at 2306.156 kb on + strand at 2306.176 kb on - strand at 2306.325 kb on + strand, within BWI76_RS10925 at 2306.366 kb on + strand, within BWI76_RS10925 at 2306.366 kb on + strand, within BWI76_RS10925 at 2306.366 kb on + strand, within BWI76_RS10925 at 2306.374 kb on - strand, within BWI76_RS10925 at 2306.374 kb on - strand, within BWI76_RS10925 at 2306.374 kb on - strand, within BWI76_RS10925 at 2306.374 kb on - strand, within BWI76_RS10925 at 2306.391 kb on + strand, within BWI76_RS10925 at 2306.431 kb on + strand, within BWI76_RS10925
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.1 mg/ml remove 2,304,027 + BWI76_RS10905 0.52 -0.4 2,304,056 - BWI76_RS10905 0.58 -0.5 2,304,163 - BWI76_RS10905 0.80 -0.4 2,304,209 + BWI76_RS10905 0.89 -0.4 2,304,289 + +0.7 2,304,303 + -1.3 2,304,312 - -0.2 2,304,342 - -0.7 2,304,517 - -0.0 2,304,547 + +0.4 2,304,557 + +1.2 2,304,565 - +0.2 2,304,609 + BWI76_RS10910 0.14 +0.2 2,304,617 - BWI76_RS10910 0.17 -0.1 2,304,623 + BWI76_RS10910 0.19 +0.7 2,304,704 - +3.4 2,304,847 + -0.6 2,304,847 + +2.0 2,304,855 - +0.4 2,304,865 + -1.4 2,304,865 + -0.7 2,304,865 + -0.4 2,304,871 + +0.0 2,304,941 + -0.1 2,304,971 + +0.9 2,304,971 + +0.5 2,305,095 - BWI76_RS10915 0.24 +0.1 2,305,114 - BWI76_RS10915 0.28 +0.9 2,305,130 + BWI76_RS10915 0.31 -0.3 2,305,138 - BWI76_RS10915 0.32 +2.0 2,305,155 - BWI76_RS10915 0.35 -0.3 2,305,350 - BWI76_RS10915 0.70 -0.4 2,305,417 - BWI76_RS10915 0.82 +1.6 2,305,515 - -0.1 2,305,631 - +0.5 2,305,631 - -0.3 2,305,644 + -0.7 2,305,682 + BWI76_RS10920 0.14 -1.7 2,305,694 + BWI76_RS10920 0.17 -0.2 2,305,809 - BWI76_RS10920 0.38 +0.1 2,305,932 - BWI76_RS10920 0.60 +2.4 2,306,156 + +0.5 2,306,176 - +1.2 2,306,325 + BWI76_RS10925 0.12 -0.8 2,306,366 + BWI76_RS10925 0.15 -0.5 2,306,366 + BWI76_RS10925 0.15 -0.8 2,306,366 + BWI76_RS10925 0.15 +0.0 2,306,374 - BWI76_RS10925 0.16 -0.7 2,306,374 - BWI76_RS10925 0.16 +0.7 2,306,374 - BWI76_RS10925 0.16 -1.1 2,306,374 - BWI76_RS10925 0.16 -0.1 2,306,391 + BWI76_RS10925 0.17 -0.9 2,306,431 + BWI76_RS10925 0.21 +0.5
Or see this region's nucleotide sequence