Experiment: Paraquat dichloride 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09350 and BWI76_RS09355 are separated by 25 nucleotides BWI76_RS09355 and BWI76_RS09360 are separated by 10 nucleotides BWI76_RS09360 and BWI76_RS09365 are separated by 149 nucleotides
BWI76_RS09350: BWI76_RS09350 - hypothetical protein, at 1,961,356 to 1,963,533
_RS09350
BWI76_RS09355: BWI76_RS09355 - hypothetical protein, at 1,963,559 to 1,964,257
_RS09355
BWI76_RS09360: BWI76_RS09360 - hypothetical protein, at 1,964,268 to 1,965,338
_RS09360
BWI76_RS09365: BWI76_RS09365 - phage tail sheath protein, at 1,965,488 to 1,966,660
_RS09365
Position (kb)
1964
1965
1966 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 1963.329 kb on + strand at 1963.336 kb on + strand at 1963.351 kb on + strand at 1963.407 kb on + strand at 1963.407 kb on + strand at 1963.407 kb on + strand at 1963.407 kb on + strand at 1963.417 kb on - strand at 1963.474 kb on + strand at 1963.489 kb on + strand at 1963.489 kb on + strand at 1963.489 kb on + strand at 1963.489 kb on + strand at 1963.567 kb on + strand at 1963.567 kb on + strand at 1963.575 kb on - strand at 1963.597 kb on + strand at 1963.598 kb on + strand at 1963.604 kb on + strand at 1963.609 kb on + strand at 1963.610 kb on + strand at 1963.610 kb on + strand at 1963.630 kb on - strand, within BWI76_RS09355 at 1963.636 kb on + strand at 1963.639 kb on - strand, within BWI76_RS09355 at 1963.668 kb on + strand, within BWI76_RS09355 at 1963.668 kb on + strand, within BWI76_RS09355 at 1963.668 kb on + strand, within BWI76_RS09355 at 1963.676 kb on - strand, within BWI76_RS09355 at 1963.676 kb on - strand, within BWI76_RS09355 at 1963.676 kb on - strand, within BWI76_RS09355 at 1963.676 kb on - strand, within BWI76_RS09355 at 1963.686 kb on + strand, within BWI76_RS09355 at 1963.690 kb on + strand, within BWI76_RS09355 at 1963.690 kb on + strand, within BWI76_RS09355 at 1963.697 kb on + strand, within BWI76_RS09355 at 1963.707 kb on - strand, within BWI76_RS09355 at 1963.712 kb on + strand, within BWI76_RS09355 at 1963.713 kb on + strand, within BWI76_RS09355 at 1963.720 kb on - strand, within BWI76_RS09355 at 1963.733 kb on + strand, within BWI76_RS09355 at 1963.733 kb on + strand, within BWI76_RS09355 at 1963.735 kb on + strand, within BWI76_RS09355 at 1963.735 kb on + strand, within BWI76_RS09355 at 1963.743 kb on + strand, within BWI76_RS09355 at 1963.759 kb on + strand, within BWI76_RS09355 at 1963.787 kb on - strand, within BWI76_RS09355 at 1963.792 kb on + strand, within BWI76_RS09355 at 1963.792 kb on + strand, within BWI76_RS09355 at 1963.800 kb on - strand, within BWI76_RS09355 at 1963.800 kb on - strand, within BWI76_RS09355 at 1963.800 kb on - strand, within BWI76_RS09355 at 1963.854 kb on - strand, within BWI76_RS09355 at 1963.856 kb on + strand, within BWI76_RS09355 at 1963.877 kb on + strand, within BWI76_RS09355 at 1963.890 kb on + strand, within BWI76_RS09355 at 1963.940 kb on + strand, within BWI76_RS09355 at 1964.165 kb on + strand, within BWI76_RS09355 at 1964.167 kb on + strand, within BWI76_RS09355 at 1964.173 kb on - strand, within BWI76_RS09355 at 1964.177 kb on + strand, within BWI76_RS09355 at 1964.177 kb on + strand, within BWI76_RS09355 at 1964.182 kb on + strand, within BWI76_RS09355 at 1964.196 kb on + strand at 1964.289 kb on + strand at 1964.297 kb on - strand at 1964.510 kb on + strand, within BWI76_RS09360 at 1964.518 kb on - strand, within BWI76_RS09360 at 1964.518 kb on - strand, within BWI76_RS09360 at 1964.541 kb on - strand, within BWI76_RS09360 at 1964.723 kb on - strand, within BWI76_RS09360 at 1964.723 kb on - strand, within BWI76_RS09360 at 1964.925 kb on + strand, within BWI76_RS09360 at 1964.970 kb on - strand, within BWI76_RS09360 at 1965.357 kb on + strand at 1965.502 kb on + strand at 1965.740 kb on - strand, within BWI76_RS09365 at 1965.754 kb on + strand, within BWI76_RS09365 at 1965.847 kb on + strand, within BWI76_RS09365 at 1965.922 kb on - strand, within BWI76_RS09365 at 1966.008 kb on + strand, within BWI76_RS09365 at 1966.026 kb on - strand at 1966.209 kb on - strand, within BWI76_RS09365 at 1966.219 kb on - strand, within BWI76_RS09365
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.1 mg/ml remove 1,963,329 + +0.0 1,963,336 + -0.1 1,963,351 + -0.1 1,963,407 + -0.3 1,963,407 + +0.1 1,963,407 + -0.0 1,963,407 + -0.4 1,963,417 - +0.6 1,963,474 + +1.5 1,963,489 + -0.3 1,963,489 + -0.6 1,963,489 + -0.5 1,963,489 + -0.2 1,963,567 + +0.6 1,963,567 + -0.1 1,963,575 - +0.3 1,963,597 + +0.4 1,963,598 + +1.4 1,963,604 + +5.4 1,963,609 + +1.4 1,963,610 + -0.5 1,963,610 + +1.1 1,963,630 - BWI76_RS09355 0.10 +0.2 1,963,636 + +1.4 1,963,639 - BWI76_RS09355 0.11 +1.1 1,963,668 + BWI76_RS09355 0.16 -0.0 1,963,668 + BWI76_RS09355 0.16 +1.2 1,963,668 + BWI76_RS09355 0.16 -0.5 1,963,676 - BWI76_RS09355 0.17 -0.8 1,963,676 - BWI76_RS09355 0.17 +0.2 1,963,676 - BWI76_RS09355 0.17 +1.1 1,963,676 - BWI76_RS09355 0.17 +0.2 1,963,686 + BWI76_RS09355 0.18 -0.8 1,963,690 + BWI76_RS09355 0.19 +0.3 1,963,690 + BWI76_RS09355 0.19 -1.0 1,963,697 + BWI76_RS09355 0.20 +0.0 1,963,707 - BWI76_RS09355 0.21 -0.4 1,963,712 + BWI76_RS09355 0.22 -0.5 1,963,713 + BWI76_RS09355 0.22 -1.8 1,963,720 - BWI76_RS09355 0.23 -0.2 1,963,733 + BWI76_RS09355 0.25 -1.2 1,963,733 + BWI76_RS09355 0.25 +0.0 1,963,735 + BWI76_RS09355 0.25 -0.9 1,963,735 + BWI76_RS09355 0.25 +1.3 1,963,743 + BWI76_RS09355 0.26 +0.3 1,963,759 + BWI76_RS09355 0.29 +1.2 1,963,787 - BWI76_RS09355 0.33 +0.0 1,963,792 + BWI76_RS09355 0.33 +2.2 1,963,792 + BWI76_RS09355 0.33 -0.9 1,963,800 - BWI76_RS09355 0.34 -0.2 1,963,800 - BWI76_RS09355 0.34 +1.1 1,963,800 - BWI76_RS09355 0.34 +0.1 1,963,854 - BWI76_RS09355 0.42 +1.8 1,963,856 + BWI76_RS09355 0.42 -0.9 1,963,877 + BWI76_RS09355 0.45 +0.9 1,963,890 + BWI76_RS09355 0.47 -0.1 1,963,940 + BWI76_RS09355 0.55 -0.5 1,964,165 + BWI76_RS09355 0.87 -0.3 1,964,167 + BWI76_RS09355 0.87 +0.1 1,964,173 - BWI76_RS09355 0.88 +1.0 1,964,177 + BWI76_RS09355 0.88 +0.7 1,964,177 + BWI76_RS09355 0.88 +0.1 1,964,182 + BWI76_RS09355 0.89 +0.4 1,964,196 + -1.2 1,964,289 + +0.1 1,964,297 - -0.3 1,964,510 + BWI76_RS09360 0.23 +0.8 1,964,518 - BWI76_RS09360 0.23 +0.2 1,964,518 - BWI76_RS09360 0.23 -1.6 1,964,541 - BWI76_RS09360 0.25 +1.8 1,964,723 - BWI76_RS09360 0.42 +0.8 1,964,723 - BWI76_RS09360 0.42 +0.2 1,964,925 + BWI76_RS09360 0.61 -0.7 1,964,970 - BWI76_RS09360 0.66 +0.7 1,965,357 + -0.4 1,965,502 + -0.4 1,965,740 - BWI76_RS09365 0.21 -0.5 1,965,754 + BWI76_RS09365 0.23 -0.5 1,965,847 + BWI76_RS09365 0.31 +0.2 1,965,922 - BWI76_RS09365 0.37 -1.0 1,966,008 + BWI76_RS09365 0.44 -1.3 1,966,026 - +2.4 1,966,209 - BWI76_RS09365 0.61 -1.2 1,966,219 - BWI76_RS09365 0.62 -0.7
Or see this region's nucleotide sequence