Experiment: Paraquat dichloride 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS06455 and BWI76_RS06460 overlap by 4 nucleotides BWI76_RS06460 and BWI76_RS06465 are separated by 153 nucleotides BWI76_RS06465 and BWI76_RS06470 are separated by 45 nucleotides BWI76_RS06470 and BWI76_RS06475 are separated by 295 nucleotides
BWI76_RS06455: BWI76_RS06455 - 3-oxosteroid 1-dehydrogenase, at 1,356,457 to 1,358,133
_RS06455
BWI76_RS06460: BWI76_RS06460 - shikimate dehydrogenase, at 1,358,130 to 1,358,951
_RS06460
BWI76_RS06465: BWI76_RS06465 - IclR family transcriptional regulator, at 1,359,105 to 1,359,863
_RS06465
BWI76_RS06470: BWI76_RS06470 - hypothetical protein, at 1,359,909 to 1,360,241
_RS06470
BWI76_RS06475: BWI76_RS06475 - protoheme IX farnesyltransferase, at 1,360,537 to 1,361,424
_RS06475
Position (kb)
1359
1360 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1358.107 kb on - strand at 1358.214 kb on + strand, within BWI76_RS06460 at 1358.222 kb on - strand, within BWI76_RS06460 at 1358.255 kb on - strand, within BWI76_RS06460 at 1358.275 kb on + strand, within BWI76_RS06460 at 1358.498 kb on + strand, within BWI76_RS06460 at 1358.530 kb on - strand, within BWI76_RS06460 at 1358.747 kb on + strand, within BWI76_RS06460 at 1359.362 kb on - strand, within BWI76_RS06465 at 1359.378 kb on - strand, within BWI76_RS06465 at 1359.499 kb on + strand, within BWI76_RS06465 at 1360.033 kb on - strand, within BWI76_RS06470 at 1360.147 kb on + strand, within BWI76_RS06470 at 1360.190 kb on + strand, within BWI76_RS06470 at 1360.277 kb on + strand at 1360.277 kb on + strand at 1360.277 kb on + strand at 1360.287 kb on - strand at 1360.287 kb on - strand at 1360.305 kb on - strand at 1360.305 kb on - strand at 1360.313 kb on - strand at 1360.546 kb on - strand at 1360.575 kb on + strand at 1360.842 kb on + strand, within BWI76_RS06475
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.1 mg/ml remove 1,358,107 - -0.7 1,358,214 + BWI76_RS06460 0.10 -0.2 1,358,222 - BWI76_RS06460 0.11 -0.6 1,358,255 - BWI76_RS06460 0.15 -0.1 1,358,275 + BWI76_RS06460 0.18 -0.4 1,358,498 + BWI76_RS06460 0.45 +0.5 1,358,530 - BWI76_RS06460 0.49 -2.8 1,358,747 + BWI76_RS06460 0.75 -0.0 1,359,362 - BWI76_RS06465 0.34 +1.5 1,359,378 - BWI76_RS06465 0.36 +1.8 1,359,499 + BWI76_RS06465 0.52 +0.8 1,360,033 - BWI76_RS06470 0.37 +0.5 1,360,147 + BWI76_RS06470 0.71 -0.1 1,360,190 + BWI76_RS06470 0.84 +0.6 1,360,277 + -1.8 1,360,277 + -0.8 1,360,277 + +1.1 1,360,287 - -1.4 1,360,287 - +0.1 1,360,305 - -0.2 1,360,305 - -0.4 1,360,313 - -0.7 1,360,546 - -0.5 1,360,575 + -0.9 1,360,842 + BWI76_RS06475 0.34 +0.4
Or see this region's nucleotide sequence