Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06300

Experiment: Paraquat dichloride 0.1 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS06295 and BWI76_RS06300 are separated by 53 nucleotidesBWI76_RS06300 and BWI76_RS06305 are separated by 22 nucleotidesBWI76_RS06305 and BWI76_RS06310 are separated by 27 nucleotides BWI76_RS06295: BWI76_RS06295 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase, at 1,325,012 to 1,326,082 _RS06295 BWI76_RS06300: BWI76_RS06300 - tRNA guanosine(34) transglycosylase Tgt, at 1,326,136 to 1,327,263 _RS06300 BWI76_RS06305: BWI76_RS06305 - preprotein translocase subunit YajC, at 1,327,286 to 1,327,618 _RS06305 BWI76_RS06310: BWI76_RS06310 - protein translocase subunit SecD, at 1,327,646 to 1,329,493 _RS06310 Position (kb) 1326 1327 1328Strain fitness (log2 ratio) -1 0 1 2 3at 1325.367 kb on + strand, within BWI76_RS06295at 1325.389 kb on + strand, within BWI76_RS06295at 1325.503 kb on + strand, within BWI76_RS06295at 1325.563 kb on - strand, within BWI76_RS06295at 1325.675 kb on - strand, within BWI76_RS06295at 1325.827 kb on + strand, within BWI76_RS06295at 1325.907 kb on + strand, within BWI76_RS06295at 1326.300 kb on + strand, within BWI76_RS06300at 1326.781 kb on + strand, within BWI76_RS06300at 1327.013 kb on - strand, within BWI76_RS06300at 1327.225 kb on + strandat 1327.225 kb on + strandat 1327.225 kb on + strandat 1327.331 kb on + strand, within BWI76_RS06305

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.1 mg/ml
remove
1,325,367 + BWI76_RS06295 0.33 +1.9
1,325,389 + BWI76_RS06295 0.35 +2.3
1,325,503 + BWI76_RS06295 0.46 +2.7
1,325,563 - BWI76_RS06295 0.51 +3.2
1,325,675 - BWI76_RS06295 0.62 +1.6
1,325,827 + BWI76_RS06295 0.76 +1.4
1,325,907 + BWI76_RS06295 0.84 +2.0
1,326,300 + BWI76_RS06300 0.15 +2.2
1,326,781 + BWI76_RS06300 0.57 +1.4
1,327,013 - BWI76_RS06300 0.78 +0.1
1,327,225 + +1.0
1,327,225 + +0.3
1,327,225 + +2.0
1,327,331 + BWI76_RS06305 0.14 +0.8

Or see this region's nucleotide sequence