Experiment: Paraquat dichloride 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS05395 and BWI76_RS05400 are separated by 54 nucleotides BWI76_RS05400 and BWI76_RS05405 are separated by 55 nucleotides BWI76_RS05405 and BWI76_RS05410 are separated by 163 nucleotides BWI76_RS05410 and BWI76_RS05415 are separated by 30 nucleotides
BWI76_RS05395: BWI76_RS05395 - 23S ribosomal RNA, at 1,132,778 to 1,135,705
_RS05395
BWI76_RS05400: BWI76_RS05400 - 5S ribosomal RNA, at 1,135,760 to 1,135,875
_RS05400
BWI76_RS05405: BWI76_RS05405 - tRNA-Asp, at 1,135,931 to 1,136,007
_RS05405
BWI76_RS05410: BWI76_RS05410 - 2,5-didehydrogluconate reductase B, at 1,136,171 to 1,136,974
_RS05410
BWI76_RS05415: BWI76_RS05415 - LysR family transcriptional regulator, at 1,137,005 to 1,137,907
_RS05415
Position (kb)
1136
1137 Strain fitness (log2 ratio)
-1
0
1
2 at 1136.583 kb on - strand, within BWI76_RS05410 at 1136.637 kb on + strand, within BWI76_RS05410 at 1136.675 kb on + strand, within BWI76_RS05410 at 1136.785 kb on + strand, within BWI76_RS05410 at 1137.065 kb on - strand at 1137.349 kb on + strand, within BWI76_RS05415 at 1137.383 kb on - strand, within BWI76_RS05415 at 1137.448 kb on + strand, within BWI76_RS05415 at 1137.448 kb on + strand at 1137.456 kb on - strand, within BWI76_RS05415 at 1137.456 kb on - strand, within BWI76_RS05415 at 1137.471 kb on - strand, within BWI76_RS05415
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.1 mg/ml remove 1,136,583 - BWI76_RS05410 0.51 -0.1 1,136,637 + BWI76_RS05410 0.58 -0.7 1,136,675 + BWI76_RS05410 0.63 -1.1 1,136,785 + BWI76_RS05410 0.76 -1.5 1,137,065 - -1.1 1,137,349 + BWI76_RS05415 0.38 -0.9 1,137,383 - BWI76_RS05415 0.42 +0.6 1,137,448 + BWI76_RS05415 0.49 +0.2 1,137,448 + +2.4 1,137,456 - BWI76_RS05415 0.50 -0.4 1,137,456 - BWI76_RS05415 0.50 +0.4 1,137,471 - BWI76_RS05415 0.52 -0.8
Or see this region's nucleotide sequence