Experiment: Varel_Bryant medium with Nitrofurantoin 0.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0581 and BT0582 are separated by 113 nucleotides BT0582 and BT0583 are separated by 21 nucleotides BT0583 and BT0584 are separated by 153 nucleotides
BT0581: BT0581 - putative acetyltransferase, GNAT family (NCBI ptt file), at 719,407 to 719,904
BT0581
BT0582: BT0582 - conserved hypothetical protein (NCBI ptt file), at 720,018 to 720,398
BT0582
BT0583: BT0583 - hypothetical protein (NCBI ptt file), at 720,420 to 721,514
BT0583
BT0584: BT0584 - putative outer membrane protein (NCBI ptt file), at 721,668 to 722,666
BT0584
Position (kb) 720
721
722 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 719.427 kb on + strand at 719.427 kb on + strand at 719.428 kb on - strand at 719.428 kb on - strand at 719.429 kb on + strand at 719.429 kb on + strand at 719.429 kb on + strand at 719.430 kb on - strand at 719.439 kb on + strand at 719.441 kb on + strand at 719.577 kb on - strand, within BT0581 at 719.577 kb on - strand, within BT0581 at 719.659 kb on + strand, within BT0581 at 719.839 kb on + strand, within BT0581 at 719.878 kb on + strand at 719.905 kb on - strand at 719.944 kb on - strand at 719.963 kb on - strand at 720.080 kb on - strand, within BT0582 at 720.157 kb on - strand, within BT0582 at 720.261 kb on + strand, within BT0582 at 720.465 kb on - strand at 720.624 kb on - strand, within BT0583 at 720.741 kb on - strand, within BT0583 at 720.786 kb on - strand, within BT0583 at 720.802 kb on + strand, within BT0583 at 720.803 kb on - strand, within BT0583 at 720.865 kb on + strand, within BT0583 at 720.866 kb on - strand, within BT0583 at 720.869 kb on - strand, within BT0583 at 720.896 kb on + strand, within BT0583 at 720.903 kb on + strand, within BT0583 at 720.920 kb on + strand, within BT0583 at 720.921 kb on - strand, within BT0583 at 720.939 kb on - strand, within BT0583 at 721.094 kb on - strand, within BT0583 at 721.190 kb on - strand, within BT0583 at 721.276 kb on + strand, within BT0583 at 721.280 kb on + strand, within BT0583 at 721.280 kb on + strand, within BT0583 at 721.285 kb on + strand, within BT0583 at 721.366 kb on + strand, within BT0583 at 721.682 kb on - strand at 721.910 kb on - strand, within BT0584 at 722.208 kb on + strand, within BT0584 at 722.345 kb on + strand, within BT0584 at 722.345 kb on + strand, within BT0584 at 722.436 kb on - strand, within BT0584 at 722.465 kb on + strand, within BT0584
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant medium with Nitrofurantoin 0.15 mM remove 719,427 + -0.7 719,427 + +0.5 719,428 - -1.4 719,428 - -0.7 719,429 + -0.7 719,429 + -1.5 719,429 + -3.2 719,430 - -0.7 719,439 + +0.9 719,441 + -0.1 719,577 - BT0581 0.34 -0.7 719,577 - BT0581 0.34 +0.6 719,659 + BT0581 0.51 -1.1 719,839 + BT0581 0.87 -0.7 719,878 + -2.2 719,905 - -0.1 719,944 - -1.1 719,963 - +1.9 720,080 - BT0582 0.16 -0.5 720,157 - BT0582 0.36 +0.9 720,261 + BT0582 0.64 +0.9 720,465 - -0.1 720,624 - BT0583 0.19 -1.4 720,741 - BT0583 0.29 -1.4 720,786 - BT0583 0.33 -0.1 720,802 + BT0583 0.35 +0.9 720,803 - BT0583 0.35 +0.9 720,865 + BT0583 0.41 -1.4 720,866 - BT0583 0.41 +0.5 720,869 - BT0583 0.41 -0.8 720,896 + BT0583 0.43 -1.9 720,903 + BT0583 0.44 +0.9 720,920 + BT0583 0.46 -1.6 720,921 - BT0583 0.46 -0.7 720,939 - BT0583 0.47 -3.3 721,094 - BT0583 0.62 +0.3 721,190 - BT0583 0.70 -1.1 721,276 + BT0583 0.78 -2.1 721,280 + BT0583 0.79 -1.7 721,280 + BT0583 0.79 -2.2 721,285 + BT0583 0.79 +0.5 721,366 + BT0583 0.86 -1.4 721,682 - -0.9 721,910 - BT0584 0.24 +0.4 722,208 + BT0584 0.54 -0.1 722,345 + BT0584 0.68 -0.1 722,345 + BT0584 0.68 -1.9 722,436 - BT0584 0.77 -1.8 722,465 + BT0584 0.80 +0.9
Or see this region's nucleotide sequence