Experiment: Def Vancomycin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0508 and Psest_0509 overlap by 1 nucleotides Psest_0509 and Psest_0510 are separated by 15 nucleotides Psest_0510 and Psest_0511 are separated by 3 nucleotides Psest_0511 and Psest_0512 are separated by 9 nucleotides
Psest_0508: Psest_0508 - gamma-glutamyl phosphate reductase, at 561,976 to 563,241
_0508
Psest_0509: Psest_0509 - nicotinate (nicotinamide) nucleotide adenylyltransferase, at 563,241 to 563,900
_0509
Psest_0510: Psest_0510 - iojap-like ribosome-associated protein, at 563,916 to 564,275
_0510
Psest_0511: Psest_0511 - rRNA large subunit m3Psi methyltransferase RlmH, at 564,279 to 564,746
_0511
Psest_0512: Psest_0512 - penicillin-binding protein 2, at 564,756 to 566,645
_0512
Position (kb) 563
564 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 562.248 kb on + strand, within Psest_0508 at 562.248 kb on + strand, within Psest_0508 at 562.288 kb on + strand, within Psest_0508 at 562.288 kb on + strand, within Psest_0508 at 562.288 kb on + strand, within Psest_0508 at 562.351 kb on + strand, within Psest_0508 at 562.351 kb on + strand, within Psest_0508 at 562.351 kb on + strand, within Psest_0508 at 562.351 kb on + strand, within Psest_0508 at 562.678 kb on + strand, within Psest_0508 at 562.678 kb on + strand, within Psest_0508 at 562.678 kb on + strand, within Psest_0508 at 562.678 kb on + strand, within Psest_0508 at 562.678 kb on + strand, within Psest_0508 at 562.678 kb on + strand, within Psest_0508 at 562.678 kb on + strand, within Psest_0508 at 562.678 kb on + strand, within Psest_0508 at 562.678 kb on + strand, within Psest_0508 at 562.678 kb on + strand, within Psest_0508 at 562.678 kb on + strand, within Psest_0508 at 562.678 kb on + strand, within Psest_0508 at 562.924 kb on + strand, within Psest_0508 at 562.924 kb on + strand, within Psest_0508 at 563.206 kb on + strand at 563.206 kb on + strand at 563.206 kb on + strand at 563.206 kb on + strand at 563.206 kb on + strand at 563.206 kb on + strand at 564.021 kb on + strand, within Psest_0510 at 564.021 kb on + strand, within Psest_0510 at 564.021 kb on + strand, within Psest_0510 at 564.021 kb on + strand, within Psest_0510 at 564.021 kb on + strand, within Psest_0510 at 564.021 kb on + strand, within Psest_0510 at 564.021 kb on + strand, within Psest_0510 at 564.021 kb on + strand, within Psest_0510 at 564.058 kb on + strand, within Psest_0510 at 564.058 kb on + strand, within Psest_0510 at 564.058 kb on + strand, within Psest_0510 at 564.207 kb on + strand, within Psest_0510 at 564.207 kb on + strand, within Psest_0510 at 564.345 kb on + strand, within Psest_0511 at 564.502 kb on + strand, within Psest_0511 at 564.502 kb on + strand, within Psest_0511 at 564.744 kb on + strand at 564.744 kb on + strand at 564.744 kb on + strand at 564.744 kb on + strand at 564.744 kb on + strand at 564.744 kb on + strand at 564.744 kb on + strand at 564.744 kb on + strand at 564.744 kb on + strand at 564.744 kb on + strand at 564.744 kb on + strand at 564.744 kb on + strand at 564.744 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Vancomycin 0.008 mg/ml remove 562,248 + Psest_0508 0.21 -1.9 562,248 + Psest_0508 0.21 -2.9 562,288 + Psest_0508 0.25 -3.1 562,288 + Psest_0508 0.25 -3.0 562,288 + Psest_0508 0.25 -3.1 562,351 + Psest_0508 0.30 -3.0 562,351 + Psest_0508 0.30 -1.7 562,351 + Psest_0508 0.30 -4.3 562,351 + Psest_0508 0.30 -2.6 562,678 + Psest_0508 0.55 -1.4 562,678 + Psest_0508 0.55 -1.0 562,678 + Psest_0508 0.55 -2.0 562,678 + Psest_0508 0.55 -3.2 562,678 + Psest_0508 0.55 -2.6 562,678 + Psest_0508 0.55 -1.0 562,678 + Psest_0508 0.55 -3.7 562,678 + Psest_0508 0.55 -4.3 562,678 + Psest_0508 0.55 -1.4 562,678 + Psest_0508 0.55 -1.8 562,678 + Psest_0508 0.55 -2.9 562,678 + Psest_0508 0.55 -3.9 562,924 + Psest_0508 0.75 -1.7 562,924 + Psest_0508 0.75 -4.1 563,206 + -2.4 563,206 + -2.6 563,206 + -1.0 563,206 + -0.8 563,206 + -1.2 563,206 + -1.8 564,021 + Psest_0510 0.29 +0.1 564,021 + Psest_0510 0.29 -0.7 564,021 + Psest_0510 0.29 +0.8 564,021 + Psest_0510 0.29 +0.2 564,021 + Psest_0510 0.29 -1.0 564,021 + Psest_0510 0.29 -0.8 564,021 + Psest_0510 0.29 +0.5 564,021 + Psest_0510 0.29 +0.6 564,058 + Psest_0510 0.39 -0.6 564,058 + Psest_0510 0.39 -0.2 564,058 + Psest_0510 0.39 -1.4 564,207 + Psest_0510 0.81 -1.1 564,207 + Psest_0510 0.81 -0.2 564,345 + Psest_0511 0.14 -0.4 564,502 + Psest_0511 0.48 -0.4 564,502 + Psest_0511 0.48 -0.1 564,744 + -2.8 564,744 + -0.4 564,744 + -2.3 564,744 + +0.8 564,744 + +0.3 564,744 + -2.5 564,744 + -2.5 564,744 + -1.6 564,744 + +0.3 564,744 + +0.2 564,744 + -0.4 564,744 + -0.2 564,744 + -0.9
Or see this region's nucleotide sequence