Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0475

Experiment: Def Vancomycin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0473 and Psest_0474 overlap by 8 nucleotidesPsest_0474 and Psest_0475 are separated by 112 nucleotidesPsest_0475 and Psest_0476 are separated by 196 nucleotides Psest_0473: Psest_0473 - Glycerol-3-phosphate dehydrogenase, at 521,763 to 522,938 _0473 Psest_0474: Psest_0474 - Membrane transporters of cations and cationic drugs, at 522,931 to 523,329 _0474 Psest_0475: Psest_0475 - 3-deoxy-D-manno-octulosonic-acid transferase, at 523,442 to 524,710 _0475 Psest_0476: Psest_0476 - type I secretion outer membrane protein, TolC family, at 524,907 to 526,361 _0476 Position (kb) 523 524 525Strain fitness (log2 ratio) -2 -1 0 1 2at 522.952 kb on - strandat 522.973 kb on - strand, within Psest_0474at 522.973 kb on - strand, within Psest_0474at 522.973 kb on - strand, within Psest_0474at 522.973 kb on - strand, within Psest_0474at 522.973 kb on - strand, within Psest_0474at 522.974 kb on + strand, within Psest_0474at 522.974 kb on + strand, within Psest_0474at 522.974 kb on + strand, within Psest_0474at 522.974 kb on + strand, within Psest_0474at 522.974 kb on + strand, within Psest_0474at 522.975 kb on - strand, within Psest_0474at 522.975 kb on - strand, within Psest_0474at 522.975 kb on - strand, within Psest_0474at 522.975 kb on - strand, within Psest_0474at 522.975 kb on - strand, within Psest_0474at 522.975 kb on - strand, within Psest_0474at 522.975 kb on - strand, within Psest_0474at 522.975 kb on - strand, within Psest_0474at 523.151 kb on + strand, within Psest_0474at 523.151 kb on + strand, within Psest_0474at 523.313 kb on + strandat 523.313 kb on + strandat 523.314 kb on - strandat 523.345 kb on - strandat 523.457 kb on + strandat 523.457 kb on + strandat 523.457 kb on + strandat 523.457 kb on + strandat 523.457 kb on + strandat 524.796 kb on + strandat 524.827 kb on + strandat 524.830 kb on + strandat 524.830 kb on + strandat 524.831 kb on - strandat 524.831 kb on - strandat 524.831 kb on - strandat 524.864 kb on + strandat 524.864 kb on + strandat 524.865 kb on - strandat 524.865 kb on - strandat 524.980 kb on + strandat 524.980 kb on + strandat 524.980 kb on + strandat 525.070 kb on + strand, within Psest_0476at 525.070 kb on + strand, within Psest_0476at 525.070 kb on + strand, within Psest_0476at 525.071 kb on - strand, within Psest_0476at 525.071 kb on - strand, within Psest_0476at 525.071 kb on - strand, within Psest_0476at 525.071 kb on - strand, within Psest_0476at 525.071 kb on - strand, within Psest_0476at 525.071 kb on - strand, within Psest_0476at 525.091 kb on + strand, within Psest_0476at 525.091 kb on + strand, within Psest_0476at 525.091 kb on + strand, within Psest_0476at 525.092 kb on - strand, within Psest_0476at 525.092 kb on - strand, within Psest_0476at 525.132 kb on + strand, within Psest_0476at 525.132 kb on + strand, within Psest_0476at 525.328 kb on + strand, within Psest_0476at 525.331 kb on + strand, within Psest_0476at 525.331 kb on + strand, within Psest_0476at 525.332 kb on - strand, within Psest_0476at 525.332 kb on - strand, within Psest_0476at 525.370 kb on + strand, within Psest_0476at 525.371 kb on - strand, within Psest_0476at 525.371 kb on - strand, within Psest_0476at 525.575 kb on - strand, within Psest_0476at 525.691 kb on + strand, within Psest_0476at 525.691 kb on + strand, within Psest_0476at 525.691 kb on + strand, within Psest_0476at 525.692 kb on - strand, within Psest_0476at 525.692 kb on - strand, within Psest_0476

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Vancomycin 0.008 mg/ml
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522,952 - -0.0
522,973 - Psest_0474 0.11 -0.0
522,973 - Psest_0474 0.11 -0.2
522,973 - Psest_0474 0.11 -2.1
522,973 - Psest_0474 0.11 -1.2
522,973 - Psest_0474 0.11 +0.0
522,974 + Psest_0474 0.11 +0.5
522,974 + Psest_0474 0.11 +0.1
522,974 + Psest_0474 0.11 -0.2
522,974 + Psest_0474 0.11 -1.1
522,974 + Psest_0474 0.11 +1.1
522,975 - Psest_0474 0.11 +0.2
522,975 - Psest_0474 0.11 -0.7
522,975 - Psest_0474 0.11 +0.3
522,975 - Psest_0474 0.11 +0.9
522,975 - Psest_0474 0.11 -1.3
522,975 - Psest_0474 0.11 -0.6
522,975 - Psest_0474 0.11 +0.4
522,975 - Psest_0474 0.11 +0.5
523,151 + Psest_0474 0.55 +0.1
523,151 + Psest_0474 0.55 -0.7
523,313 + +0.1
523,313 + -0.0
523,314 - -0.1
523,345 - +0.2
523,457 + +1.1
523,457 + -0.0
523,457 + -0.6
523,457 + +0.2
523,457 + -0.8
524,796 + +0.3
524,827 + +0.4
524,830 + -0.6
524,830 + -0.3
524,831 - +0.4
524,831 - +0.2
524,831 - +0.0
524,864 + +0.7
524,864 + +0.8
524,865 - +0.4
524,865 - +0.2
524,980 + -1.2
524,980 + +0.3
524,980 + +0.2
525,070 + Psest_0476 0.11 -1.4
525,070 + Psest_0476 0.11 +0.2
525,070 + Psest_0476 0.11 +0.8
525,071 - Psest_0476 0.11 +1.8
525,071 - Psest_0476 0.11 +1.7
525,071 - Psest_0476 0.11 +0.2
525,071 - Psest_0476 0.11 +0.0
525,071 - Psest_0476 0.11 +0.0
525,071 - Psest_0476 0.11 -1.8
525,091 + Psest_0476 0.13 +1.0
525,091 + Psest_0476 0.13 -1.1
525,091 + Psest_0476 0.13 +1.4
525,092 - Psest_0476 0.13 -0.3
525,092 - Psest_0476 0.13 -0.2
525,132 + Psest_0476 0.15 +0.6
525,132 + Psest_0476 0.15 +1.0
525,328 + Psest_0476 0.29 -0.7
525,331 + Psest_0476 0.29 -0.0
525,331 + Psest_0476 0.29 -0.7
525,332 - Psest_0476 0.29 +0.5
525,332 - Psest_0476 0.29 -1.0
525,370 + Psest_0476 0.32 +0.3
525,371 - Psest_0476 0.32 +0.0
525,371 - Psest_0476 0.32 +0.0
525,575 - Psest_0476 0.46 -0.0
525,691 + Psest_0476 0.54 -0.9
525,691 + Psest_0476 0.54 +0.3
525,691 + Psest_0476 0.54 +1.2
525,692 - Psest_0476 0.54 +0.7
525,692 - Psest_0476 0.54 +0.0

Or see this region's nucleotide sequence