Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3899

Experiment: Def Vancomycin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3897 and Psest_3898 are separated by 114 nucleotidesPsest_3898 and Psest_3899 overlap by 4 nucleotidesPsest_3899 and Psest_3900 are separated by 201 nucleotides Psest_3897: Psest_3897 - Protein of unknown function (DUF2628)., at 4,065,788 to 4,066,216 _3897 Psest_3898: Psest_3898 - Dienelactone hydrolase and related enzymes, at 4,066,331 to 4,066,984 _3898 Psest_3899: Psest_3899 - Predicted phosphoribosyltransferases, at 4,066,981 to 4,067,649 _3899 Psest_3900: Psest_3900 - Spermidine/putrescine-binding periplasmic protein, at 4,067,851 to 4,068,936 _3900 Position (kb) 4066 4067 4068Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4065.993 kb on + strand, within Psest_3897at 4065.993 kb on + strand, within Psest_3897at 4065.993 kb on + strand, within Psest_3897at 4065.994 kb on - strand, within Psest_3897at 4065.994 kb on - strand, within Psest_3897at 4065.994 kb on - strand, within Psest_3897at 4065.996 kb on + strand, within Psest_3897at 4065.996 kb on + strand, within Psest_3897at 4065.996 kb on + strand, within Psest_3897at 4065.997 kb on - strand, within Psest_3897at 4065.997 kb on - strand, within Psest_3897at 4067.064 kb on - strand, within Psest_3899at 4067.082 kb on - strand, within Psest_3899at 4067.082 kb on - strand, within Psest_3899at 4067.082 kb on - strand, within Psest_3899at 4067.082 kb on - strand, within Psest_3899at 4067.304 kb on - strand, within Psest_3899at 4067.356 kb on + strand, within Psest_3899at 4067.356 kb on + strand, within Psest_3899at 4067.356 kb on + strand, within Psest_3899at 4067.356 kb on + strand, within Psest_3899at 4067.357 kb on - strand, within Psest_3899at 4067.357 kb on - strand, within Psest_3899at 4067.357 kb on - strand, within Psest_3899at 4067.357 kb on - strand, within Psest_3899at 4067.681 kb on - strandat 4067.797 kb on + strandat 4067.797 kb on + strandat 4067.797 kb on + strandat 4067.797 kb on + strandat 4067.797 kb on + strandat 4067.798 kb on - strandat 4067.798 kb on - strandat 4067.798 kb on - strandat 4067.798 kb on - strandat 4067.798 kb on - strandat 4067.798 kb on - strandat 4067.798 kb on - strandat 4067.798 kb on - strandat 4067.798 kb on - strandat 4067.798 kb on - strandat 4067.798 kb on - strandat 4067.798 kb on - strandat 4067.842 kb on + strandat 4067.842 kb on + strandat 4067.980 kb on + strand, within Psest_3900at 4067.980 kb on + strand, within Psest_3900at 4067.980 kb on + strand, within Psest_3900at 4067.980 kb on + strand, within Psest_3900at 4067.980 kb on + strand, within Psest_3900at 4067.980 kb on + strand, within Psest_3900at 4067.980 kb on + strand, within Psest_3900at 4067.981 kb on - strand, within Psest_3900at 4067.981 kb on - strand, within Psest_3900at 4067.981 kb on - strandat 4068.043 kb on + strand, within Psest_3900at 4068.043 kb on + strand, within Psest_3900at 4068.043 kb on + strand, within Psest_3900at 4068.043 kb on + strand, within Psest_3900at 4068.044 kb on - strand, within Psest_3900at 4068.044 kb on - strand, within Psest_3900at 4068.044 kb on - strand, within Psest_3900at 4068.103 kb on - strand, within Psest_3900at 4068.104 kb on + strand, within Psest_3900at 4068.104 kb on + strand, within Psest_3900at 4068.104 kb on + strand, within Psest_3900at 4068.104 kb on + strand, within Psest_3900at 4068.105 kb on - strand, within Psest_3900at 4068.105 kb on - strand, within Psest_3900at 4068.105 kb on - strand, within Psest_3900at 4068.105 kb on - strand, within Psest_3900at 4068.105 kb on - strand, within Psest_3900at 4068.229 kb on + strand, within Psest_3900at 4068.241 kb on + strand, within Psest_3900at 4068.241 kb on + strand, within Psest_3900at 4068.241 kb on + strand, within Psest_3900at 4068.242 kb on - strand, within Psest_3900at 4068.242 kb on - strand, within Psest_3900at 4068.484 kb on + strand, within Psest_3900at 4068.484 kb on + strand, within Psest_3900at 4068.484 kb on + strand, within Psest_3900at 4068.484 kb on + strand, within Psest_3900at 4068.485 kb on - strand, within Psest_3900at 4068.490 kb on + strand, within Psest_3900at 4068.490 kb on + strand, within Psest_3900at 4068.491 kb on - strand, within Psest_3900at 4068.491 kb on - strand, within Psest_3900at 4068.491 kb on - strand, within Psest_3900at 4068.510 kb on + strand, within Psest_3900at 4068.550 kb on + strand, within Psest_3900at 4068.614 kb on + strand, within Psest_3900at 4068.614 kb on + strand, within Psest_3900at 4068.614 kb on + strand, within Psest_3900at 4068.614 kb on + strand, within Psest_3900at 4068.614 kb on + strand, within Psest_3900at 4068.614 kb on + strand, within Psest_3900at 4068.614 kb on + strand, within Psest_3900at 4068.614 kb on + strandat 4068.615 kb on - strand, within Psest_3900at 4068.615 kb on - strand, within Psest_3900at 4068.615 kb on - strand, within Psest_3900at 4068.615 kb on - strand, within Psest_3900at 4068.615 kb on - strand, within Psest_3900

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Vancomycin 0.008 mg/ml
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4,065,993 + Psest_3897 0.48 +1.8
4,065,993 + Psest_3897 0.48 +2.4
4,065,993 + Psest_3897 0.48 +0.3
4,065,994 - Psest_3897 0.48 +0.4
4,065,994 - Psest_3897 0.48 +1.4
4,065,994 - Psest_3897 0.48 -1.2
4,065,996 + Psest_3897 0.48 +0.2
4,065,996 + Psest_3897 0.48 +0.8
4,065,996 + Psest_3897 0.48 +2.4
4,065,997 - Psest_3897 0.49 +1.8
4,065,997 - Psest_3897 0.49 -0.1
4,067,064 - Psest_3899 0.12 -1.7
4,067,082 - Psest_3899 0.15 +0.6
4,067,082 - Psest_3899 0.15 -1.0
4,067,082 - Psest_3899 0.15 -0.2
4,067,082 - Psest_3899 0.15 +0.2
4,067,304 - Psest_3899 0.48 +0.3
4,067,356 + Psest_3899 0.56 -0.2
4,067,356 + Psest_3899 0.56 +0.8
4,067,356 + Psest_3899 0.56 -0.5
4,067,356 + Psest_3899 0.56 -2.0
4,067,357 - Psest_3899 0.56 +0.8
4,067,357 - Psest_3899 0.56 -0.8
4,067,357 - Psest_3899 0.56 -0.0
4,067,357 - Psest_3899 0.56 -0.5
4,067,681 - -0.3
4,067,797 + -0.2
4,067,797 + -0.4
4,067,797 + +0.2
4,067,797 + +0.1
4,067,797 + +1.2
4,067,798 - -0.2
4,067,798 - +0.2
4,067,798 - +1.4
4,067,798 - +0.1
4,067,798 - -0.5
4,067,798 - -0.4
4,067,798 - +2.8
4,067,798 - +0.6
4,067,798 - -0.5
4,067,798 - +2.1
4,067,798 - -0.2
4,067,798 - -0.4
4,067,842 + +0.2
4,067,842 + +0.2
4,067,980 + Psest_3900 0.12 +0.6
4,067,980 + Psest_3900 0.12 -1.5
4,067,980 + Psest_3900 0.12 -1.4
4,067,980 + Psest_3900 0.12 +0.6
4,067,980 + Psest_3900 0.12 +0.3
4,067,980 + Psest_3900 0.12 -0.7
4,067,980 + Psest_3900 0.12 -1.7
4,067,981 - Psest_3900 0.12 -0.6
4,067,981 - Psest_3900 0.12 +0.5
4,067,981 - +0.8
4,068,043 + Psest_3900 0.18 -0.2
4,068,043 + Psest_3900 0.18 -1.7
4,068,043 + Psest_3900 0.18 +0.2
4,068,043 + Psest_3900 0.18 +0.9
4,068,044 - Psest_3900 0.18 -0.5
4,068,044 - Psest_3900 0.18 -0.5
4,068,044 - Psest_3900 0.18 -1.0
4,068,103 - Psest_3900 0.23 +0.4
4,068,104 + Psest_3900 0.23 -2.7
4,068,104 + Psest_3900 0.23 +0.8
4,068,104 + Psest_3900 0.23 +0.1
4,068,104 + Psest_3900 0.23 +1.1
4,068,105 - Psest_3900 0.23 +0.2
4,068,105 - Psest_3900 0.23 +0.4
4,068,105 - Psest_3900 0.23 +0.2
4,068,105 - Psest_3900 0.23 -0.1
4,068,105 - Psest_3900 0.23 -0.8
4,068,229 + Psest_3900 0.35 +0.3
4,068,241 + Psest_3900 0.36 +1.2
4,068,241 + Psest_3900 0.36 +0.6
4,068,241 + Psest_3900 0.36 +1.1
4,068,242 - Psest_3900 0.36 -0.7
4,068,242 - Psest_3900 0.36 +0.4
4,068,484 + Psest_3900 0.58 -0.2
4,068,484 + Psest_3900 0.58 -0.1
4,068,484 + Psest_3900 0.58 +0.8
4,068,484 + Psest_3900 0.58 +0.7
4,068,485 - Psest_3900 0.58 +0.2
4,068,490 + Psest_3900 0.59 -0.0
4,068,490 + Psest_3900 0.59 -1.2
4,068,491 - Psest_3900 0.59 +0.2
4,068,491 - Psest_3900 0.59 -1.2
4,068,491 - Psest_3900 0.59 +0.8
4,068,510 + Psest_3900 0.61 +0.3
4,068,550 + Psest_3900 0.64 -0.4
4,068,614 + Psest_3900 0.70 -0.1
4,068,614 + Psest_3900 0.70 +0.4
4,068,614 + Psest_3900 0.70 +1.0
4,068,614 + Psest_3900 0.70 +1.1
4,068,614 + Psest_3900 0.70 -0.2
4,068,614 + Psest_3900 0.70 -0.4
4,068,614 + Psest_3900 0.70 +0.4
4,068,614 + +0.8
4,068,615 - Psest_3900 0.70 +0.8
4,068,615 - Psest_3900 0.70 -1.2
4,068,615 - Psest_3900 0.70 -0.4
4,068,615 - Psest_3900 0.70 +0.8
4,068,615 - Psest_3900 0.70 +0.5

Or see this region's nucleotide sequence