Experiment: Def Vancomycin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3897 and Psest_3898 are separated by 114 nucleotides Psest_3898 and Psest_3899 overlap by 4 nucleotides Psest_3899 and Psest_3900 are separated by 201 nucleotides
Psest_3897: Psest_3897 - Protein of unknown function (DUF2628)., at 4,065,788 to 4,066,216
_3897
Psest_3898: Psest_3898 - Dienelactone hydrolase and related enzymes, at 4,066,331 to 4,066,984
_3898
Psest_3899: Psest_3899 - Predicted phosphoribosyltransferases, at 4,066,981 to 4,067,649
_3899
Psest_3900: Psest_3900 - Spermidine/putrescine-binding periplasmic protein, at 4,067,851 to 4,068,936
_3900
Position (kb)
4066
4067
4068 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4065.993 kb on + strand, within Psest_3897 at 4065.993 kb on + strand, within Psest_3897 at 4065.993 kb on + strand, within Psest_3897 at 4065.994 kb on - strand, within Psest_3897 at 4065.994 kb on - strand, within Psest_3897 at 4065.994 kb on - strand, within Psest_3897 at 4065.996 kb on + strand, within Psest_3897 at 4065.996 kb on + strand, within Psest_3897 at 4065.996 kb on + strand, within Psest_3897 at 4065.997 kb on - strand, within Psest_3897 at 4065.997 kb on - strand, within Psest_3897 at 4067.064 kb on - strand, within Psest_3899 at 4067.082 kb on - strand, within Psest_3899 at 4067.082 kb on - strand, within Psest_3899 at 4067.082 kb on - strand, within Psest_3899 at 4067.082 kb on - strand, within Psest_3899 at 4067.304 kb on - strand, within Psest_3899 at 4067.356 kb on + strand, within Psest_3899 at 4067.356 kb on + strand, within Psest_3899 at 4067.356 kb on + strand, within Psest_3899 at 4067.356 kb on + strand, within Psest_3899 at 4067.357 kb on - strand, within Psest_3899 at 4067.357 kb on - strand, within Psest_3899 at 4067.357 kb on - strand, within Psest_3899 at 4067.357 kb on - strand, within Psest_3899 at 4067.681 kb on - strand at 4067.797 kb on + strand at 4067.797 kb on + strand at 4067.797 kb on + strand at 4067.797 kb on + strand at 4067.797 kb on + strand at 4067.798 kb on - strand at 4067.798 kb on - strand at 4067.798 kb on - strand at 4067.798 kb on - strand at 4067.798 kb on - strand at 4067.798 kb on - strand at 4067.798 kb on - strand at 4067.798 kb on - strand at 4067.798 kb on - strand at 4067.798 kb on - strand at 4067.798 kb on - strand at 4067.798 kb on - strand at 4067.842 kb on + strand at 4067.842 kb on + strand at 4067.980 kb on + strand, within Psest_3900 at 4067.980 kb on + strand, within Psest_3900 at 4067.980 kb on + strand, within Psest_3900 at 4067.980 kb on + strand, within Psest_3900 at 4067.980 kb on + strand, within Psest_3900 at 4067.980 kb on + strand, within Psest_3900 at 4067.980 kb on + strand, within Psest_3900 at 4067.981 kb on - strand, within Psest_3900 at 4067.981 kb on - strand, within Psest_3900 at 4067.981 kb on - strand at 4068.043 kb on + strand, within Psest_3900 at 4068.043 kb on + strand, within Psest_3900 at 4068.043 kb on + strand, within Psest_3900 at 4068.043 kb on + strand, within Psest_3900 at 4068.044 kb on - strand, within Psest_3900 at 4068.044 kb on - strand, within Psest_3900 at 4068.044 kb on - strand, within Psest_3900 at 4068.103 kb on - strand, within Psest_3900 at 4068.104 kb on + strand, within Psest_3900 at 4068.104 kb on + strand, within Psest_3900 at 4068.104 kb on + strand, within Psest_3900 at 4068.104 kb on + strand, within Psest_3900 at 4068.105 kb on - strand, within Psest_3900 at 4068.105 kb on - strand, within Psest_3900 at 4068.105 kb on - strand, within Psest_3900 at 4068.105 kb on - strand, within Psest_3900 at 4068.105 kb on - strand, within Psest_3900 at 4068.229 kb on + strand, within Psest_3900 at 4068.241 kb on + strand, within Psest_3900 at 4068.241 kb on + strand, within Psest_3900 at 4068.241 kb on + strand, within Psest_3900 at 4068.242 kb on - strand, within Psest_3900 at 4068.242 kb on - strand, within Psest_3900 at 4068.484 kb on + strand, within Psest_3900 at 4068.484 kb on + strand, within Psest_3900 at 4068.484 kb on + strand, within Psest_3900 at 4068.484 kb on + strand, within Psest_3900 at 4068.485 kb on - strand, within Psest_3900 at 4068.490 kb on + strand, within Psest_3900 at 4068.490 kb on + strand, within Psest_3900 at 4068.491 kb on - strand, within Psest_3900 at 4068.491 kb on - strand, within Psest_3900 at 4068.491 kb on - strand, within Psest_3900 at 4068.510 kb on + strand, within Psest_3900 at 4068.550 kb on + strand, within Psest_3900 at 4068.614 kb on + strand, within Psest_3900 at 4068.614 kb on + strand, within Psest_3900 at 4068.614 kb on + strand, within Psest_3900 at 4068.614 kb on + strand, within Psest_3900 at 4068.614 kb on + strand, within Psest_3900 at 4068.614 kb on + strand, within Psest_3900 at 4068.614 kb on + strand, within Psest_3900 at 4068.614 kb on + strand at 4068.615 kb on - strand, within Psest_3900 at 4068.615 kb on - strand, within Psest_3900 at 4068.615 kb on - strand, within Psest_3900 at 4068.615 kb on - strand, within Psest_3900 at 4068.615 kb on - strand, within Psest_3900
Per-strain Table
Position Strand Gene LocusTag Fraction Def Vancomycin 0.008 mg/ml remove 4,065,993 + Psest_3897 0.48 +1.8 4,065,993 + Psest_3897 0.48 +2.4 4,065,993 + Psest_3897 0.48 +0.3 4,065,994 - Psest_3897 0.48 +0.4 4,065,994 - Psest_3897 0.48 +1.4 4,065,994 - Psest_3897 0.48 -1.2 4,065,996 + Psest_3897 0.48 +0.2 4,065,996 + Psest_3897 0.48 +0.8 4,065,996 + Psest_3897 0.48 +2.4 4,065,997 - Psest_3897 0.49 +1.8 4,065,997 - Psest_3897 0.49 -0.1 4,067,064 - Psest_3899 0.12 -1.7 4,067,082 - Psest_3899 0.15 +0.6 4,067,082 - Psest_3899 0.15 -1.0 4,067,082 - Psest_3899 0.15 -0.2 4,067,082 - Psest_3899 0.15 +0.2 4,067,304 - Psest_3899 0.48 +0.3 4,067,356 + Psest_3899 0.56 -0.2 4,067,356 + Psest_3899 0.56 +0.8 4,067,356 + Psest_3899 0.56 -0.5 4,067,356 + Psest_3899 0.56 -2.0 4,067,357 - Psest_3899 0.56 +0.8 4,067,357 - Psest_3899 0.56 -0.8 4,067,357 - Psest_3899 0.56 -0.0 4,067,357 - Psest_3899 0.56 -0.5 4,067,681 - -0.3 4,067,797 + -0.2 4,067,797 + -0.4 4,067,797 + +0.2 4,067,797 + +0.1 4,067,797 + +1.2 4,067,798 - -0.2 4,067,798 - +0.2 4,067,798 - +1.4 4,067,798 - +0.1 4,067,798 - -0.5 4,067,798 - -0.4 4,067,798 - +2.8 4,067,798 - +0.6 4,067,798 - -0.5 4,067,798 - +2.1 4,067,798 - -0.2 4,067,798 - -0.4 4,067,842 + +0.2 4,067,842 + +0.2 4,067,980 + Psest_3900 0.12 +0.6 4,067,980 + Psest_3900 0.12 -1.5 4,067,980 + Psest_3900 0.12 -1.4 4,067,980 + Psest_3900 0.12 +0.6 4,067,980 + Psest_3900 0.12 +0.3 4,067,980 + Psest_3900 0.12 -0.7 4,067,980 + Psest_3900 0.12 -1.7 4,067,981 - Psest_3900 0.12 -0.6 4,067,981 - Psest_3900 0.12 +0.5 4,067,981 - +0.8 4,068,043 + Psest_3900 0.18 -0.2 4,068,043 + Psest_3900 0.18 -1.7 4,068,043 + Psest_3900 0.18 +0.2 4,068,043 + Psest_3900 0.18 +0.9 4,068,044 - Psest_3900 0.18 -0.5 4,068,044 - Psest_3900 0.18 -0.5 4,068,044 - Psest_3900 0.18 -1.0 4,068,103 - Psest_3900 0.23 +0.4 4,068,104 + Psest_3900 0.23 -2.7 4,068,104 + Psest_3900 0.23 +0.8 4,068,104 + Psest_3900 0.23 +0.1 4,068,104 + Psest_3900 0.23 +1.1 4,068,105 - Psest_3900 0.23 +0.2 4,068,105 - Psest_3900 0.23 +0.4 4,068,105 - Psest_3900 0.23 +0.2 4,068,105 - Psest_3900 0.23 -0.1 4,068,105 - Psest_3900 0.23 -0.8 4,068,229 + Psest_3900 0.35 +0.3 4,068,241 + Psest_3900 0.36 +1.2 4,068,241 + Psest_3900 0.36 +0.6 4,068,241 + Psest_3900 0.36 +1.1 4,068,242 - Psest_3900 0.36 -0.7 4,068,242 - Psest_3900 0.36 +0.4 4,068,484 + Psest_3900 0.58 -0.2 4,068,484 + Psest_3900 0.58 -0.1 4,068,484 + Psest_3900 0.58 +0.8 4,068,484 + Psest_3900 0.58 +0.7 4,068,485 - Psest_3900 0.58 +0.2 4,068,490 + Psest_3900 0.59 -0.0 4,068,490 + Psest_3900 0.59 -1.2 4,068,491 - Psest_3900 0.59 +0.2 4,068,491 - Psest_3900 0.59 -1.2 4,068,491 - Psest_3900 0.59 +0.8 4,068,510 + Psest_3900 0.61 +0.3 4,068,550 + Psest_3900 0.64 -0.4 4,068,614 + Psest_3900 0.70 -0.1 4,068,614 + Psest_3900 0.70 +0.4 4,068,614 + Psest_3900 0.70 +1.0 4,068,614 + Psest_3900 0.70 +1.1 4,068,614 + Psest_3900 0.70 -0.2 4,068,614 + Psest_3900 0.70 -0.4 4,068,614 + Psest_3900 0.70 +0.4 4,068,614 + +0.8 4,068,615 - Psest_3900 0.70 +0.8 4,068,615 - Psest_3900 0.70 -1.2 4,068,615 - Psest_3900 0.70 -0.4 4,068,615 - Psest_3900 0.70 +0.8 4,068,615 - Psest_3900 0.70 +0.5
Or see this region's nucleotide sequence