Experiment: Def Vancomycin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2534 and Psest_2535 overlap by 8 nucleotides Psest_2535 and Psest_2536 are separated by 18 nucleotides Psest_2536 and Psest_2537 are separated by 205 nucleotides
Psest_2534: Psest_2534 - cytochrome oxidase maturation protein, cbb3-type, at 2,715,636 to 2,715,848
_2534
Psest_2535: Psest_2535 - Uncharacterized conserved protein, at 2,715,841 to 2,716,557
_2535
Psest_2536: Psest_2536 - NAD+ synthetase, at 2,716,576 to 2,717,403
_2536
Psest_2537: Psest_2537 - oxygen-independent coproporphyrinogen III oxidase, at 2,717,609 to 2,718,991
_2537
Position (kb)
2716
2717
2718 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2715.595 kb on - strand at 2715.595 kb on - strand at 2715.803 kb on - strand, within Psest_2534 at 2716.556 kb on - strand at 2717.423 kb on - strand at 2717.573 kb on - strand at 2717.674 kb on + strand at 2717.674 kb on + strand at 2717.674 kb on + strand at 2717.674 kb on + strand at 2717.674 kb on + strand at 2717.674 kb on + strand at 2717.674 kb on + strand at 2717.675 kb on - strand at 2717.675 kb on - strand at 2717.675 kb on - strand at 2717.777 kb on + strand, within Psest_2537 at 2717.810 kb on + strand, within Psest_2537 at 2717.814 kb on - strand, within Psest_2537 at 2717.938 kb on - strand, within Psest_2537 at 2717.938 kb on - strand, within Psest_2537 at 2718.153 kb on + strand, within Psest_2537 at 2718.154 kb on - strand, within Psest_2537 at 2718.154 kb on - strand, within Psest_2537 at 2718.254 kb on + strand, within Psest_2537 at 2718.254 kb on + strand, within Psest_2537 at 2718.254 kb on + strand, within Psest_2537 at 2718.254 kb on + strand, within Psest_2537 at 2718.254 kb on + strand, within Psest_2537 at 2718.255 kb on - strand, within Psest_2537 at 2718.255 kb on - strand, within Psest_2537 at 2718.255 kb on - strand, within Psest_2537 at 2718.255 kb on - strand, within Psest_2537 at 2718.255 kb on - strand, within Psest_2537 at 2718.255 kb on - strand, within Psest_2537 at 2718.255 kb on - strand, within Psest_2537 at 2718.255 kb on - strand, within Psest_2537 at 2718.255 kb on - strand, within Psest_2537 at 2718.255 kb on - strand, within Psest_2537 at 2718.345 kb on - strand, within Psest_2537 at 2718.345 kb on - strand, within Psest_2537 at 2718.345 kb on - strand, within Psest_2537 at 2718.384 kb on + strand, within Psest_2537 at 2718.385 kb on - strand, within Psest_2537 at 2718.385 kb on - strand, within Psest_2537
Per-strain Table
Position Strand Gene LocusTag Fraction Def Vancomycin 0.008 mg/ml remove 2,715,595 - +0.1 2,715,595 - -0.0 2,715,803 - Psest_2534 0.78 -2.5 2,716,556 - -1.0 2,717,423 - +0.1 2,717,573 - -1.8 2,717,674 + -0.1 2,717,674 + -1.4 2,717,674 + -1.1 2,717,674 + -0.8 2,717,674 + +0.1 2,717,674 + -1.2 2,717,674 + +0.3 2,717,675 - -0.1 2,717,675 - -0.1 2,717,675 - +0.6 2,717,777 + Psest_2537 0.12 -1.8 2,717,810 + Psest_2537 0.15 -0.0 2,717,814 - Psest_2537 0.15 +0.6 2,717,938 - Psest_2537 0.24 -0.6 2,717,938 - Psest_2537 0.24 +0.3 2,718,153 + Psest_2537 0.39 -2.1 2,718,154 - Psest_2537 0.39 +0.3 2,718,154 - Psest_2537 0.39 -0.9 2,718,254 + Psest_2537 0.47 -0.4 2,718,254 + Psest_2537 0.47 -3.1 2,718,254 + Psest_2537 0.47 +0.8 2,718,254 + Psest_2537 0.47 +0.5 2,718,254 + Psest_2537 0.47 -0.3 2,718,255 - Psest_2537 0.47 +0.2 2,718,255 - Psest_2537 0.47 -0.5 2,718,255 - Psest_2537 0.47 -2.2 2,718,255 - Psest_2537 0.47 -0.0 2,718,255 - Psest_2537 0.47 -0.8 2,718,255 - Psest_2537 0.47 -0.9 2,718,255 - Psest_2537 0.47 +0.2 2,718,255 - Psest_2537 0.47 +0.1 2,718,255 - Psest_2537 0.47 -0.8 2,718,255 - Psest_2537 0.47 +0.4 2,718,345 - Psest_2537 0.53 +0.4 2,718,345 - Psest_2537 0.53 +0.1 2,718,345 - Psest_2537 0.53 -0.6 2,718,384 + Psest_2537 0.56 -2.1 2,718,385 - Psest_2537 0.56 -0.8 2,718,385 - Psest_2537 0.56 +0.7
Or see this region's nucleotide sequence