Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1028

Experiment: RCH2 defined media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1026 and Psest_1028 are separated by 205 nucleotidesPsest_1028 and Psest_1029 are separated by 111 nucleotidesPsest_1029 and Psest_1030 are separated by 18 nucleotides Psest_1026: Psest_1026 - Uncharacterized iron-regulated protein, at 1,112,376 to 1,113,260 _1026 Psest_1028: Psest_1028 - Cyclic nucleotide-binding domain., at 1,113,466 to 1,114,263 _1028 Psest_1029: Psest_1029 - Regulator of competence-specific genes, at 1,114,375 to 1,114,638 _1029 Psest_1030: Psest_1030 - Methylase involved in ubiquinone/menaquinone biosynthesis, at 1,114,657 to 1,115,442 _1030 Position (kb) 1113 1114 1115Strain fitness (log2 ratio) -2 -1 0 1 2at 1112.516 kb on + strand, within Psest_1026at 1112.516 kb on + strand, within Psest_1026at 1112.550 kb on + strand, within Psest_1026at 1112.551 kb on - strand, within Psest_1026at 1112.657 kb on - strand, within Psest_1026at 1112.784 kb on + strand, within Psest_1026at 1113.136 kb on + strand, within Psest_1026at 1113.193 kb on - strandat 1113.202 kb on - strandat 1113.203 kb on + strandat 1113.203 kb on + strandat 1113.204 kb on - strandat 1113.204 kb on - strandat 1113.274 kb on + strandat 1113.274 kb on + strandat 1113.275 kb on - strandat 1113.275 kb on - strandat 1113.694 kb on + strand, within Psest_1028at 1113.694 kb on + strand, within Psest_1028at 1113.694 kb on + strand, within Psest_1028at 1113.695 kb on - strand, within Psest_1028at 1113.754 kb on + strand, within Psest_1028at 1113.754 kb on + strand, within Psest_1028at 1113.754 kb on + strand, within Psest_1028at 1113.754 kb on + strand, within Psest_1028at 1113.754 kb on + strand, within Psest_1028at 1113.754 kb on + strand, within Psest_1028at 1113.754 kb on + strand, within Psest_1028at 1113.754 kb on + strand, within Psest_1028at 1113.754 kb on + strand, within Psest_1028at 1113.754 kb on + strand, within Psest_1028at 1113.754 kb on + strand, within Psest_1028at 1113.754 kb on + strand, within Psest_1028at 1113.755 kb on - strand, within Psest_1028at 1113.755 kb on - strand, within Psest_1028at 1113.755 kb on - strand, within Psest_1028at 1113.755 kb on - strand, within Psest_1028at 1113.755 kb on - strand, within Psest_1028at 1113.755 kb on - strand, within Psest_1028at 1113.755 kb on - strand, within Psest_1028at 1113.755 kb on - strand, within Psest_1028at 1113.930 kb on + strand, within Psest_1028at 1113.965 kb on - strand, within Psest_1028at 1114.049 kb on + strand, within Psest_1028at 1114.049 kb on + strand, within Psest_1028at 1114.049 kb on + strand, within Psest_1028at 1114.050 kb on - strand, within Psest_1028at 1114.050 kb on - strand, within Psest_1028at 1114.105 kb on + strand, within Psest_1028at 1114.105 kb on + strand, within Psest_1028at 1114.105 kb on + strand, within Psest_1028at 1114.105 kb on + strand, within Psest_1028at 1114.105 kb on + strand, within Psest_1028at 1114.105 kb on + strand, within Psest_1028at 1114.106 kb on - strand, within Psest_1028at 1114.106 kb on - strand, within Psest_1028at 1114.106 kb on - strand, within Psest_1028at 1114.106 kb on - strand, within Psest_1028at 1114.106 kb on - strand, within Psest_1028at 1114.106 kb on - strand, within Psest_1028at 1114.106 kb on - strand, within Psest_1028at 1114.106 kb on - strand, within Psest_1028at 1114.106 kb on - strand, within Psest_1028at 1114.106 kb on - strand, within Psest_1028at 1114.106 kb on - strand, within Psest_1028at 1114.255 kb on + strandat 1114.256 kb on - strandat 1114.259 kb on + strandat 1114.259 kb on + strandat 1114.259 kb on + strandat 1114.259 kb on + strandat 1114.259 kb on + strandat 1114.259 kb on + strandat 1114.259 kb on + strandat 1114.259 kb on + strandat 1114.259 kb on + strandat 1114.259 kb on + strandat 1114.259 kb on + strandat 1114.259 kb on + strandat 1114.259 kb on + strandat 1114.260 kb on - strandat 1114.260 kb on - strandat 1114.260 kb on - strandat 1114.260 kb on - strandat 1114.260 kb on - strandat 1114.260 kb on - strandat 1114.260 kb on - strandat 1114.263 kb on + strandat 1114.320 kb on + strandat 1114.342 kb on + strandat 1114.342 kb on + strandat 1114.342 kb on + strandat 1114.342 kb on + strandat 1114.376 kb on + strandat 1114.376 kb on + strandat 1114.376 kb on + strandat 1114.376 kb on + strandat 1114.377 kb on - strandat 1114.377 kb on - strandat 1114.377 kb on - strandat 1114.377 kb on - strandat 1114.377 kb on - strandat 1114.377 kb on - strandat 1114.475 kb on + strand, within Psest_1029at 1114.475 kb on + strand, within Psest_1029at 1114.475 kb on + strand, within Psest_1029at 1114.475 kb on + strand, within Psest_1029at 1114.475 kb on + strand, within Psest_1029at 1114.475 kb on + strand, within Psest_1029at 1114.475 kb on + strand, within Psest_1029at 1114.688 kb on - strandat 1114.915 kb on + strand, within Psest_1030at 1114.916 kb on - strand, within Psest_1030at 1114.916 kb on - strand, within Psest_1030at 1114.916 kb on - strand, within Psest_1030at 1114.916 kb on - strand, within Psest_1030at 1114.916 kb on - strand, within Psest_1030at 1114.916 kb on - strand, within Psest_1030at 1114.916 kb on - strand, within Psest_1030at 1114.962 kb on - strand, within Psest_1030at 1114.962 kb on - strand, within Psest_1030at 1115.012 kb on + strand, within Psest_1030at 1115.240 kb on + strand, within Psest_1030at 1115.241 kb on - strand, within Psest_1030at 1115.241 kb on - strand, within Psest_1030

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2 defined media
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1,112,516 + Psest_1026 0.16 +0.5
1,112,516 + Psest_1026 0.16 -0.6
1,112,550 + Psest_1026 0.20 -2.6
1,112,551 - Psest_1026 0.20 +0.3
1,112,657 - Psest_1026 0.32 +0.0
1,112,784 + Psest_1026 0.46 +0.7
1,113,136 + Psest_1026 0.86 +0.2
1,113,193 - -0.7
1,113,202 - -0.5
1,113,203 + +0.0
1,113,203 + -1.5
1,113,204 - +0.8
1,113,204 - -0.4
1,113,274 + +0.4
1,113,274 + +0.2
1,113,275 - +1.1
1,113,275 - -0.2
1,113,694 + Psest_1028 0.29 +1.1
1,113,694 + Psest_1028 0.29 -0.5
1,113,694 + Psest_1028 0.29 -0.5
1,113,695 - Psest_1028 0.29 -1.2
1,113,754 + Psest_1028 0.36 +0.0
1,113,754 + Psest_1028 0.36 +0.2
1,113,754 + Psest_1028 0.36 +0.8
1,113,754 + Psest_1028 0.36 -0.5
1,113,754 + Psest_1028 0.36 +0.0
1,113,754 + Psest_1028 0.36 -0.8
1,113,754 + Psest_1028 0.36 +0.1
1,113,754 + Psest_1028 0.36 -0.8
1,113,754 + Psest_1028 0.36 -0.5
1,113,754 + Psest_1028 0.36 +0.5
1,113,754 + Psest_1028 0.36 -2.1
1,113,754 + Psest_1028 0.36 +0.5
1,113,755 - Psest_1028 0.36 +0.5
1,113,755 - Psest_1028 0.36 -0.2
1,113,755 - Psest_1028 0.36 +0.2
1,113,755 - Psest_1028 0.36 +0.1
1,113,755 - Psest_1028 0.36 -2.6
1,113,755 - Psest_1028 0.36 +0.5
1,113,755 - Psest_1028 0.36 +0.3
1,113,755 - Psest_1028 0.36 -2.2
1,113,930 + Psest_1028 0.58 +0.6
1,113,965 - Psest_1028 0.63 -0.5
1,114,049 + Psest_1028 0.73 -1.5
1,114,049 + Psest_1028 0.73 -1.0
1,114,049 + Psest_1028 0.73 -0.4
1,114,050 - Psest_1028 0.73 -0.0
1,114,050 - Psest_1028 0.73 -0.5
1,114,105 + Psest_1028 0.80 +0.7
1,114,105 + Psest_1028 0.80 +0.1
1,114,105 + Psest_1028 0.80 +0.0
1,114,105 + Psest_1028 0.80 +0.8
1,114,105 + Psest_1028 0.80 +0.3
1,114,105 + Psest_1028 0.80 +0.2
1,114,106 - Psest_1028 0.80 -0.1
1,114,106 - Psest_1028 0.80 -1.4
1,114,106 - Psest_1028 0.80 -0.3
1,114,106 - Psest_1028 0.80 -0.2
1,114,106 - Psest_1028 0.80 -0.7
1,114,106 - Psest_1028 0.80 -0.7
1,114,106 - Psest_1028 0.80 +0.3
1,114,106 - Psest_1028 0.80 +0.2
1,114,106 - Psest_1028 0.80 +0.3
1,114,106 - Psest_1028 0.80 +0.0
1,114,106 - Psest_1028 0.80 -0.3
1,114,255 + +1.1
1,114,256 - +1.0
1,114,259 + +0.8
1,114,259 + -0.7
1,114,259 + -0.7
1,114,259 + +0.2
1,114,259 + -1.1
1,114,259 + +1.8
1,114,259 + -1.0
1,114,259 + -0.5
1,114,259 + +0.2
1,114,259 + -0.2
1,114,259 + -0.4
1,114,259 + +0.2
1,114,259 + +0.5
1,114,260 - -0.2
1,114,260 - -0.1
1,114,260 - +0.0
1,114,260 - -0.7
1,114,260 - -0.3
1,114,260 - +0.1
1,114,260 - -0.0
1,114,263 + +0.5
1,114,320 + +0.6
1,114,342 + +0.3
1,114,342 + +0.2
1,114,342 + +0.5
1,114,342 + -0.0
1,114,376 + +0.0
1,114,376 + +0.3
1,114,376 + +0.1
1,114,376 + -0.1
1,114,377 - +0.3
1,114,377 - -0.4
1,114,377 - +0.6
1,114,377 - -0.2
1,114,377 - +0.0
1,114,377 - +0.0
1,114,475 + Psest_1029 0.38 -0.4
1,114,475 + Psest_1029 0.38 -0.4
1,114,475 + Psest_1029 0.38 -0.7
1,114,475 + Psest_1029 0.38 -0.8
1,114,475 + Psest_1029 0.38 -2.1
1,114,475 + Psest_1029 0.38 +0.8
1,114,475 + Psest_1029 0.38 -0.8
1,114,688 - -0.3
1,114,915 + Psest_1030 0.33 -0.2
1,114,916 - Psest_1030 0.33 -0.5
1,114,916 - Psest_1030 0.33 -0.2
1,114,916 - Psest_1030 0.33 -1.4
1,114,916 - Psest_1030 0.33 -0.2
1,114,916 - Psest_1030 0.33 -0.7
1,114,916 - Psest_1030 0.33 -0.7
1,114,916 - Psest_1030 0.33 +0.5
1,114,962 - Psest_1030 0.39 +1.7
1,114,962 - Psest_1030 0.39 +0.1
1,115,012 + Psest_1030 0.45 +0.5
1,115,240 + Psest_1030 0.74 -0.7
1,115,241 - Psest_1030 0.74 -0.5
1,115,241 - Psest_1030 0.74 -0.2

Or see this region's nucleotide sequence