Experiment: RCH2 defined media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0094 and Psest_0095 overlap by 1 nucleotides Psest_0095 and Psest_0096 overlap by 1 nucleotides Psest_0096 and Psest_0097 are separated by 11 nucleotides
Psest_0094: Psest_0094 - Uncharacterized enzyme of phosphonate metabolism, at 94,478 to 95,587
_0094
Psest_0095: Psest_0095 - phosphonate C-P lyase system protein PhnH, at 95,587 to 96,195
_0095
Psest_0096: Psest_0096 - phosphonate C-P lyase system protein PhnG, at 96,195 to 96,641
_0096
Psest_0097: Psest_0097 - phosphonates metabolism transcriptional regulator PhnF, at 96,653 to 97,381
_0097
Position (kb) 95
96
97 Strain fitness (log2 ratio) -1
0
1
2
3 at 95.217 kb on + strand, within Psest_0094 at 95.217 kb on + strand, within Psest_0094 at 95.218 kb on - strand, within Psest_0094 at 95.218 kb on - strand, within Psest_0094 at 95.218 kb on - strand, within Psest_0094 at 95.583 kb on + strand at 95.583 kb on + strand at 95.583 kb on + strand at 95.583 kb on + strand at 95.583 kb on + strand at 95.583 kb on + strand at 95.583 kb on + strand at 95.583 kb on + strand at 95.583 kb on + strand at 95.583 kb on + strand at 95.584 kb on - strand at 95.584 kb on - strand at 95.584 kb on - strand at 95.584 kb on - strand at 95.584 kb on - strand at 95.584 kb on - strand at 95.584 kb on - strand at 95.584 kb on - strand at 95.584 kb on - strand at 95.855 kb on + strand, within Psest_0095 at 95.855 kb on + strand, within Psest_0095 at 95.855 kb on + strand, within Psest_0095 at 95.855 kb on + strand, within Psest_0095 at 95.856 kb on - strand, within Psest_0095 at 95.856 kb on - strand at 96.036 kb on - strand, within Psest_0095 at 96.394 kb on + strand, within Psest_0096 at 96.535 kb on + strand, within Psest_0096 at 96.669 kb on + strand at 96.865 kb on - strand, within Psest_0097 at 97.101 kb on + strand, within Psest_0097 at 97.125 kb on + strand, within Psest_0097
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2 defined media remove 95,217 + Psest_0094 0.67 -0.1 95,217 + Psest_0094 0.67 +1.2 95,218 - Psest_0094 0.67 -0.5 95,218 - Psest_0094 0.67 +1.5 95,218 - Psest_0094 0.67 +1.2 95,583 + +2.8 95,583 + +0.2 95,583 + +1.0 95,583 + +1.5 95,583 + -0.1 95,583 + -0.1 95,583 + +0.5 95,583 + +1.5 95,583 + -0.1 95,583 + -0.1 95,584 - -0.4 95,584 - +0.5 95,584 - -1.5 95,584 - -0.0 95,584 - -0.8 95,584 - +0.5 95,584 - +0.0 95,584 - +0.1 95,584 - +1.5 95,855 + Psest_0095 0.44 +3.0 95,855 + Psest_0095 0.44 -0.4 95,855 + Psest_0095 0.44 +0.5 95,855 + Psest_0095 0.44 -0.1 95,856 - Psest_0095 0.44 +1.2 95,856 - +0.5 96,036 - Psest_0095 0.74 +3.5 96,394 + Psest_0096 0.45 +0.5 96,535 + Psest_0096 0.76 +1.5 96,669 + +0.9 96,865 - Psest_0097 0.29 +3.0 97,101 + Psest_0097 0.61 +0.5 97,125 + Psest_0097 0.65 +0.9
Or see this region's nucleotide sequence