Experiment: RCH2 defined media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0573 and Psest_0574 are separated by 25 nucleotides Psest_0574 and Psest_0575 are separated by 156 nucleotides Psest_0575 and Psest_0576 are separated by 27 nucleotides
Psest_0573: Psest_0573 - cation diffusion facilitator family transporter, at 627,631 to 628,521
_0573
Psest_0574: Psest_0574 - hypothetical protein, at 628,547 to 628,963
_0574
Psest_0575: Psest_0575 - HrpA-like helicases, at 629,120 to 629,584
_0575
Psest_0576: Psest_0576 - hypothetical protein, at 629,612 to 630,211
_0576
Position (kb) 628
629 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 627.804 kb on + strand, within Psest_0573 at 627.950 kb on + strand, within Psest_0573 at 627.950 kb on + strand, within Psest_0573 at 627.950 kb on + strand, within Psest_0573 at 627.950 kb on + strand, within Psest_0573 at 627.950 kb on + strand, within Psest_0573 at 627.950 kb on + strand, within Psest_0573 at 627.951 kb on - strand, within Psest_0573 at 627.951 kb on - strand, within Psest_0573 at 627.951 kb on - strand, within Psest_0573 at 627.951 kb on - strand, within Psest_0573 at 627.951 kb on - strand, within Psest_0573 at 627.951 kb on - strand, within Psest_0573 at 627.951 kb on - strand, within Psest_0573 at 628.055 kb on + strand, within Psest_0573 at 628.115 kb on + strand, within Psest_0573 at 628.116 kb on - strand, within Psest_0573 at 628.492 kb on - strand at 628.533 kb on - strand at 628.731 kb on + strand, within Psest_0574 at 628.732 kb on - strand, within Psest_0574 at 628.732 kb on - strand, within Psest_0574 at 628.749 kb on + strand, within Psest_0574 at 628.750 kb on - strand, within Psest_0574 at 628.750 kb on - strand, within Psest_0574 at 628.750 kb on - strand, within Psest_0574 at 628.750 kb on - strand, within Psest_0574 at 628.750 kb on - strand, within Psest_0574 at 628.803 kb on + strand, within Psest_0574 at 628.803 kb on + strand, within Psest_0574 at 628.803 kb on + strand, within Psest_0574 at 628.803 kb on + strand, within Psest_0574 at 628.803 kb on + strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.836 kb on - strand, within Psest_0574 at 628.836 kb on - strand, within Psest_0574 at 628.957 kb on + strand at 628.957 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.993 kb on - strand at 628.993 kb on - strand at 628.993 kb on - strand at 628.993 kb on - strand at 628.993 kb on - strand at 628.993 kb on - strand at 628.993 kb on - strand at 628.993 kb on - strand at 628.993 kb on - strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 629.092 kb on - strand at 629.092 kb on - strand at 629.092 kb on - strand at 629.094 kb on - strand at 629.094 kb on - strand at 629.094 kb on - strand at 629.094 kb on - strand at 629.094 kb on - strand at 629.130 kb on + strand at 629.131 kb on - strand at 629.131 kb on - strand at 629.131 kb on - strand at 629.131 kb on - strand at 629.135 kb on - strand at 629.135 kb on - strand at 629.508 kb on + strand, within Psest_0575 at 629.583 kb on - strand at 629.583 kb on - strand at 629.604 kb on - strand at 629.604 kb on - strand at 629.710 kb on + strand, within Psest_0576 at 629.710 kb on + strand, within Psest_0576 at 629.731 kb on + strand, within Psest_0576 at 629.757 kb on + strand, within Psest_0576 at 629.757 kb on + strand, within Psest_0576 at 629.757 kb on + strand, within Psest_0576 at 629.757 kb on + strand, within Psest_0576 at 629.757 kb on + strand, within Psest_0576 at 629.757 kb on + strand, within Psest_0576 at 629.757 kb on + strand, within Psest_0576 at 629.757 kb on + strand, within Psest_0576 at 629.757 kb on + strand, within Psest_0576 at 629.758 kb on - strand, within Psest_0576 at 629.758 kb on - strand, within Psest_0576 at 629.758 kb on - strand, within Psest_0576 at 629.758 kb on - strand, within Psest_0576 at 629.758 kb on - strand, within Psest_0576 at 629.758 kb on - strand, within Psest_0576 at 629.758 kb on - strand, within Psest_0576 at 629.758 kb on - strand, within Psest_0576 at 629.760 kb on + strand, within Psest_0576 at 629.760 kb on + strand, within Psest_0576 at 629.760 kb on + strand, within Psest_0576 at 629.760 kb on + strand, within Psest_0576 at 629.760 kb on + strand, within Psest_0576 at 629.760 kb on + strand, within Psest_0576 at 629.760 kb on + strand, within Psest_0576 at 629.761 kb on - strand, within Psest_0576 at 629.770 kb on + strand, within Psest_0576 at 629.771 kb on - strand, within Psest_0576 at 629.783 kb on + strand, within Psest_0576 at 629.783 kb on + strand, within Psest_0576 at 629.819 kb on + strand, within Psest_0576 at 629.819 kb on + strand, within Psest_0576 at 629.820 kb on - strand, within Psest_0576 at 629.820 kb on - strand, within Psest_0576 at 629.866 kb on + strand, within Psest_0576 at 629.867 kb on - strand, within Psest_0576 at 629.880 kb on + strand, within Psest_0576 at 629.880 kb on + strand, within Psest_0576 at 629.881 kb on - strand, within Psest_0576 at 629.945 kb on + strand, within Psest_0576 at 629.945 kb on + strand, within Psest_0576 at 629.946 kb on - strand, within Psest_0576 at 629.946 kb on - strand, within Psest_0576
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2 defined media remove 627,804 + Psest_0573 0.19 +0.2 627,950 + Psest_0573 0.36 +1.0 627,950 + Psest_0573 0.36 +1.4 627,950 + Psest_0573 0.36 +0.8 627,950 + Psest_0573 0.36 +1.4 627,950 + Psest_0573 0.36 -0.1 627,950 + Psest_0573 0.36 +0.4 627,951 - Psest_0573 0.36 -0.2 627,951 - Psest_0573 0.36 +2.0 627,951 - Psest_0573 0.36 +1.4 627,951 - Psest_0573 0.36 -0.1 627,951 - Psest_0573 0.36 -0.1 627,951 - Psest_0573 0.36 +0.3 627,951 - Psest_0573 0.36 -0.3 628,055 + Psest_0573 0.48 +0.4 628,115 + Psest_0573 0.54 +0.5 628,116 - Psest_0573 0.54 +0.7 628,492 - -0.1 628,533 - -0.6 628,731 + Psest_0574 0.44 +1.4 628,732 - Psest_0574 0.44 -1.6 628,732 - Psest_0574 0.44 +1.4 628,749 + Psest_0574 0.48 +2.4 628,750 - Psest_0574 0.49 -0.2 628,750 - Psest_0574 0.49 +1.3 628,750 - Psest_0574 0.49 +1.0 628,750 - Psest_0574 0.49 +0.6 628,750 - Psest_0574 0.49 +1.0 628,803 + Psest_0574 0.61 +0.9 628,803 + Psest_0574 0.61 -0.4 628,803 + Psest_0574 0.61 +0.8 628,803 + Psest_0574 0.61 +0.4 628,803 + Psest_0574 0.61 +0.4 628,804 - Psest_0574 0.62 -0.2 628,804 - Psest_0574 0.62 -1.2 628,804 - Psest_0574 0.62 -0.6 628,804 - Psest_0574 0.62 +0.2 628,804 - Psest_0574 0.62 +1.0 628,804 - Psest_0574 0.62 +0.7 628,804 - Psest_0574 0.62 -0.6 628,804 - Psest_0574 0.62 -0.3 628,804 - Psest_0574 0.62 +0.1 628,804 - Psest_0574 0.62 -0.1 628,804 - Psest_0574 0.62 +1.8 628,804 - Psest_0574 0.62 +0.5 628,836 - Psest_0574 0.69 +0.8 628,836 - Psest_0574 0.69 +0.3 628,957 + +1.4 628,957 + +2.0 628,992 + +0.4 628,992 + +2.0 628,992 + +1.4 628,992 + -0.6 628,992 + +0.6 628,992 + +1.4 628,992 + +1.4 628,992 + +0.2 628,992 + -0.5 628,992 + +0.4 628,992 + +2.1 628,992 + -0.6 628,992 + +2.4 628,992 + -0.6 628,992 + -0.9 628,992 + +0.4 628,992 + -0.2 628,992 + +1.2 628,993 - +0.9 628,993 - -0.4 628,993 - +1.2 628,993 - +1.9 628,993 - -0.6 628,993 - -0.9 628,993 - +0.3 628,993 - +0.7 628,993 - +1.2 628,994 + +0.8 628,994 + +1.4 628,994 + -0.6 628,994 + +0.4 628,994 + +0.1 628,994 + +0.1 628,994 + +1.4 628,994 + +1.7 628,994 + -0.9 628,994 + +1.7 628,994 + +2.4 628,994 + +3.0 628,994 + +0.8 628,994 + -0.6 628,994 + +0.8 628,994 + -0.4 628,994 + +2.0 628,994 + +0.1 628,994 + +2.4 628,994 + -0.6 628,994 + +0.4 628,995 - +0.8 628,995 - +0.8 628,995 - +0.1 628,995 - +2.4 628,995 - +0.6 628,995 - +0.8 628,995 - +0.6 628,995 - +0.5 628,995 - +0.7 628,995 - +1.5 628,995 - +0.2 628,995 - +1.0 628,995 - -0.2 628,995 - -0.2 628,995 - +0.9 628,995 - +1.4 628,995 - -0.9 628,995 - +0.9 628,995 - -1.1 628,995 - +2.4 628,995 - -0.2 628,995 - -1.8 628,995 - +0.6 628,995 - +0.5 628,995 - -0.6 628,995 - +2.4 628,995 - +0.4 628,995 - +0.9 628,995 - -1.4 628,995 - +1.4 628,995 - +0.5 628,995 - +0.7 628,995 - +1.1 629,092 - -0.5 629,092 - +1.0 629,092 - +0.2 629,094 - -0.8 629,094 - +1.0 629,094 - +0.8 629,094 - +1.4 629,094 - -1.4 629,130 + +0.4 629,131 - -0.4 629,131 - +0.6 629,131 - +0.0 629,131 - +0.2 629,135 - -0.3 629,135 - -0.2 629,508 + Psest_0575 0.83 +0.6 629,583 - +0.4 629,583 - +0.8 629,604 - +0.1 629,604 - +0.8 629,710 + Psest_0576 0.16 -0.2 629,710 + Psest_0576 0.16 +0.2 629,731 + Psest_0576 0.20 +2.3 629,757 + Psest_0576 0.24 -0.1 629,757 + Psest_0576 0.24 +0.5 629,757 + Psest_0576 0.24 -0.2 629,757 + Psest_0576 0.24 -1.4 629,757 + Psest_0576 0.24 -0.9 629,757 + Psest_0576 0.24 +1.2 629,757 + Psest_0576 0.24 -0.0 629,757 + Psest_0576 0.24 -0.0 629,757 + Psest_0576 0.24 +0.4 629,758 - Psest_0576 0.24 +0.4 629,758 - Psest_0576 0.24 +2.0 629,758 - Psest_0576 0.24 -0.4 629,758 - Psest_0576 0.24 -0.2 629,758 - Psest_0576 0.24 +0.1 629,758 - Psest_0576 0.24 +0.5 629,758 - Psest_0576 0.24 +1.4 629,758 - Psest_0576 0.24 -0.6 629,760 + Psest_0576 0.25 +0.2 629,760 + Psest_0576 0.25 +0.2 629,760 + Psest_0576 0.25 -0.1 629,760 + Psest_0576 0.25 -0.2 629,760 + Psest_0576 0.25 -1.1 629,760 + Psest_0576 0.25 +0.1 629,760 + Psest_0576 0.25 +0.0 629,761 - Psest_0576 0.25 +0.2 629,770 + Psest_0576 0.26 +0.5 629,771 - Psest_0576 0.27 +0.6 629,783 + Psest_0576 0.28 +0.5 629,783 + Psest_0576 0.28 -0.4 629,819 + Psest_0576 0.34 -0.3 629,819 + Psest_0576 0.34 -0.4 629,820 - Psest_0576 0.35 +1.2 629,820 - Psest_0576 0.35 +0.2 629,866 + Psest_0576 0.42 +0.9 629,867 - Psest_0576 0.42 +2.0 629,880 + Psest_0576 0.45 +0.2 629,880 + Psest_0576 0.45 -0.0 629,881 - Psest_0576 0.45 +0.4 629,945 + Psest_0576 0.56 +1.4 629,945 + Psest_0576 0.56 -0.2 629,946 - Psest_0576 0.56 +1.4 629,946 - Psest_0576 0.56 +1.6
Or see this region's nucleotide sequence