Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0268

Experiment: RCH2 defined media

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_0266 and Psest_0267 are separated by 74 nucleotidesPsest_0267 and Psest_0268 are separated by 65 nucleotidesPsest_0268 and Psest_0269 are separated by 229 nucleotides Psest_0266: Psest_0266 - thiamine biosynthesis protein ThiS, at 282,659 to 282,859 _0266 Psest_0267: Psest_0267 - Uncharacterized enzyme of thiazole biosynthesis, at 282,934 to 283,728 _0267 Psest_0268: Psest_0268 - tRNA (guanine-N(7)-)-methyltransferase, at 283,794 to 284,510 _0268 Psest_0269: Psest_0269 - Protein of unknown function (DUF1329)., at 284,740 to 286,077 _0269 Position (kb) 283 284 285Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 282.837 kb on + strand, within Psest_0266at 282.837 kb on + strand, within Psest_0266at 282.837 kb on + strand, within Psest_0266at 282.837 kb on + strand, within Psest_0266at 282.838 kb on - strand, within Psest_0266at 282.838 kb on - strand, within Psest_0266at 282.838 kb on - strand, within Psest_0266at 282.838 kb on - strand, within Psest_0266at 282.838 kb on - strand, within Psest_0266at 282.838 kb on - strand, within Psest_0266at 282.838 kb on - strand, within Psest_0266at 282.889 kb on + strandat 282.890 kb on - strandat 282.892 kb on - strandat 282.909 kb on + strandat 282.909 kb on + strandat 282.910 kb on - strandat 282.982 kb on + strandat 282.982 kb on + strandat 283.015 kb on + strand, within Psest_0267at 283.015 kb on + strand, within Psest_0267at 283.015 kb on + strand, within Psest_0267at 283.015 kb on + strand, within Psest_0267at 283.150 kb on + strand, within Psest_0267at 283.151 kb on - strand, within Psest_0267at 283.280 kb on + strand, within Psest_0267at 283.280 kb on + strand, within Psest_0267at 283.351 kb on + strand, within Psest_0267at 283.351 kb on + strand, within Psest_0267at 283.351 kb on + strand, within Psest_0267at 283.352 kb on - strand, within Psest_0267at 283.352 kb on - strand, within Psest_0267at 283.352 kb on - strand, within Psest_0267at 283.352 kb on - strand, within Psest_0267at 283.352 kb on - strand, within Psest_0267at 283.352 kb on - strand, within Psest_0267at 283.352 kb on - strand, within Psest_0267at 283.352 kb on - strand, within Psest_0267at 283.352 kb on - strand, within Psest_0267at 283.352 kb on - strand, within Psest_0267at 283.459 kb on + strand, within Psest_0267at 283.459 kb on + strand, within Psest_0267at 283.460 kb on - strand, within Psest_0267at 283.460 kb on - strand, within Psest_0267at 283.630 kb on + strand, within Psest_0267at 283.630 kb on + strand, within Psest_0267at 283.630 kb on + strand, within Psest_0267at 283.630 kb on + strand, within Psest_0267at 283.630 kb on + strand, within Psest_0267at 283.630 kb on + strand, within Psest_0267at 283.631 kb on - strand, within Psest_0267at 283.631 kb on - strand, within Psest_0267at 283.631 kb on - strand, within Psest_0267at 283.658 kb on - strandat 283.687 kb on + strandat 283.788 kb on + strandat 283.788 kb on + strandat 283.789 kb on - strandat 283.789 kb on - strandat 284.079 kb on - strand, within Psest_0268at 284.142 kb on + strand, within Psest_0268at 284.142 kb on + strand, within Psest_0268at 284.142 kb on + strand, within Psest_0268at 284.142 kb on + strand, within Psest_0268at 284.142 kb on + strand, within Psest_0268at 284.142 kb on + strand, within Psest_0268at 284.143 kb on - strand, within Psest_0268at 284.143 kb on - strand, within Psest_0268at 284.143 kb on - strand, within Psest_0268at 284.143 kb on - strand, within Psest_0268at 284.319 kb on - strand, within Psest_0268at 284.349 kb on + strand, within Psest_0268at 284.349 kb on + strand, within Psest_0268at 284.350 kb on - strand, within Psest_0268at 284.350 kb on - strand, within Psest_0268at 284.350 kb on - strand, within Psest_0268at 284.350 kb on - strand, within Psest_0268at 284.479 kb on + strandat 284.537 kb on - strandat 284.537 kb on - strandat 284.537 kb on - strandat 284.538 kb on + strandat 284.608 kb on + strandat 284.668 kb on + strandat 284.668 kb on + strandat 284.668 kb on + strandat 284.668 kb on + strandat 284.669 kb on - strandat 284.669 kb on - strandat 284.669 kb on - strandat 284.669 kb on - strandat 284.669 kb on - strandat 284.669 kb on - strandat 284.670 kb on + strandat 284.670 kb on + strandat 284.670 kb on + strandat 284.671 kb on - strandat 284.671 kb on - strandat 284.671 kb on - strandat 284.671 kb on - strandat 284.735 kb on - strandat 284.743 kb on + strandat 284.743 kb on + strandat 284.805 kb on - strandat 284.805 kb on - strandat 284.974 kb on + strand, within Psest_0269at 284.974 kb on + strand, within Psest_0269at 284.974 kb on + strand, within Psest_0269at 284.974 kb on + strand, within Psest_0269at 284.974 kb on + strand, within Psest_0269at 284.974 kb on + strand, within Psest_0269at 284.974 kb on + strand, within Psest_0269at 284.974 kb on + strand, within Psest_0269at 284.974 kb on + strand, within Psest_0269at 284.974 kb on + strand, within Psest_0269at 285.112 kb on + strand, within Psest_0269at 285.112 kb on + strand, within Psest_0269at 285.112 kb on + strand, within Psest_0269at 285.112 kb on + strand, within Psest_0269at 285.113 kb on - strand, within Psest_0269at 285.113 kb on - strand, within Psest_0269at 285.113 kb on - strand, within Psest_0269at 285.113 kb on - strand, within Psest_0269at 285.113 kb on - strand, within Psest_0269at 285.113 kb on - strand, within Psest_0269at 285.113 kb on - strand, within Psest_0269at 285.113 kb on - strand, within Psest_0269at 285.113 kb on - strand, within Psest_0269at 285.128 kb on - strand, within Psest_0269at 285.237 kb on + strand, within Psest_0269at 285.247 kb on + strand, within Psest_0269at 285.247 kb on + strand, within Psest_0269at 285.247 kb on + strand, within Psest_0269at 285.247 kb on + strand, within Psest_0269at 285.247 kb on + strand, within Psest_0269at 285.247 kb on + strand, within Psest_0269at 285.247 kb on + strand, within Psest_0269at 285.247 kb on + strand, within Psest_0269at 285.247 kb on + strand, within Psest_0269at 285.248 kb on - strand, within Psest_0269at 285.248 kb on - strand, within Psest_0269at 285.248 kb on - strand, within Psest_0269at 285.248 kb on - strand, within Psest_0269at 285.248 kb on - strand, within Psest_0269at 285.248 kb on - strand, within Psest_0269at 285.248 kb on - strand, within Psest_0269at 285.248 kb on - strand, within Psest_0269at 285.248 kb on - strand, within Psest_0269at 285.248 kb on - strand, within Psest_0269at 285.310 kb on + strand, within Psest_0269at 285.310 kb on + strand, within Psest_0269at 285.310 kb on + strand, within Psest_0269at 285.310 kb on + strand, within Psest_0269at 285.310 kb on + strand, within Psest_0269at 285.310 kb on + strand, within Psest_0269at 285.310 kb on + strand, within Psest_0269at 285.310 kb on + strand, within Psest_0269at 285.310 kb on + strand, within Psest_0269at 285.311 kb on - strand, within Psest_0269at 285.311 kb on - strand, within Psest_0269at 285.311 kb on - strand, within Psest_0269at 285.311 kb on - strand, within Psest_0269at 285.311 kb on - strand, within Psest_0269at 285.311 kb on - strand, within Psest_0269at 285.311 kb on - strand, within Psest_0269at 285.311 kb on - strand, within Psest_0269at 285.311 kb on - strand, within Psest_0269at 285.311 kb on - strand, within Psest_0269at 285.311 kb on - strand, within Psest_0269at 285.334 kb on + strand, within Psest_0269at 285.334 kb on + strand, within Psest_0269at 285.334 kb on + strand, within Psest_0269at 285.334 kb on + strand, within Psest_0269at 285.334 kb on + strand, within Psest_0269at 285.335 kb on - strand, within Psest_0269at 285.335 kb on - strand, within Psest_0269at 285.335 kb on - strand, within Psest_0269at 285.335 kb on - strand, within Psest_0269at 285.335 kb on - strand, within Psest_0269at 285.335 kb on - strand, within Psest_0269at 285.335 kb on - strand, within Psest_0269at 285.335 kb on - strand, within Psest_0269at 285.335 kb on - strand, within Psest_0269at 285.335 kb on - strand, within Psest_0269at 285.337 kb on + strand, within Psest_0269at 285.337 kb on + strand, within Psest_0269at 285.338 kb on - strand, within Psest_0269at 285.338 kb on - strand, within Psest_0269at 285.338 kb on - strand, within Psest_0269at 285.338 kb on - strand, within Psest_0269at 285.338 kb on - strand, within Psest_0269at 285.338 kb on - strand, within Psest_0269at 285.338 kb on - strand, within Psest_0269at 285.338 kb on - strand, within Psest_0269at 285.338 kb on - strand, within Psest_0269at 285.338 kb on - strand, within Psest_0269at 285.338 kb on - strand, within Psest_0269at 285.343 kb on + strand, within Psest_0269at 285.343 kb on + strand, within Psest_0269at 285.364 kb on + strand, within Psest_0269at 285.364 kb on + strand, within Psest_0269at 285.364 kb on + strand, within Psest_0269at 285.364 kb on + strand, within Psest_0269at 285.364 kb on + strand, within Psest_0269at 285.365 kb on - strand, within Psest_0269at 285.365 kb on - strand, within Psest_0269at 285.365 kb on - strand, within Psest_0269at 285.365 kb on - strand, within Psest_0269at 285.365 kb on - strand, within Psest_0269at 285.392 kb on - strand, within Psest_0269at 285.394 kb on + strand, within Psest_0269at 285.394 kb on + strand, within Psest_0269at 285.394 kb on + strand, within Psest_0269at 285.394 kb on + strand, within Psest_0269at 285.394 kb on + strand, within Psest_0269at 285.394 kb on + strand, within Psest_0269at 285.394 kb on + strand, within Psest_0269at 285.395 kb on - strand, within Psest_0269at 285.395 kb on - strand, within Psest_0269at 285.395 kb on - strand, within Psest_0269at 285.395 kb on - strand, within Psest_0269at 285.395 kb on - strand, within Psest_0269at 285.395 kb on - strand, within Psest_0269at 285.395 kb on - strand, within Psest_0269at 285.395 kb on - strand, within Psest_0269at 285.401 kb on - strand, within Psest_0269at 285.494 kb on - strand, within Psest_0269

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction RCH2 defined media
remove
282,837 + Psest_0266 0.89 -2.2
282,837 + Psest_0266 0.89 -1.3
282,837 + Psest_0266 0.89 -1.5
282,837 + Psest_0266 0.89 -2.6
282,838 - Psest_0266 0.89 -1.7
282,838 - Psest_0266 0.89 -1.5
282,838 - Psest_0266 0.89 -2.1
282,838 - Psest_0266 0.89 -1.1
282,838 - Psest_0266 0.89 -0.1
282,838 - Psest_0266 0.89 -0.5
282,838 - Psest_0266 0.89 -3.3
282,889 + +0.2
282,890 - -0.0
282,892 - +0.3
282,909 + -0.8
282,909 + +0.7
282,910 - -0.6
282,982 + -2.0
282,982 + -1.2
283,015 + Psest_0267 0.10 -2.2
283,015 + Psest_0267 0.10 -1.7
283,015 + Psest_0267 0.10 -2.2
283,015 + Psest_0267 0.10 -1.0
283,150 + Psest_0267 0.27 -1.5
283,151 - Psest_0267 0.27 -2.3
283,280 + Psest_0267 0.44 -2.0
283,280 + Psest_0267 0.44 -1.9
283,351 + Psest_0267 0.52 -2.1
283,351 + Psest_0267 0.52 -1.6
283,351 + Psest_0267 0.52 -0.5
283,352 - Psest_0267 0.53 -1.9
283,352 - Psest_0267 0.53 -2.0
283,352 - Psest_0267 0.53 -3.0
283,352 - Psest_0267 0.53 -2.1
283,352 - Psest_0267 0.53 -3.0
283,352 - Psest_0267 0.53 -1.8
283,352 - Psest_0267 0.53 -1.8
283,352 - Psest_0267 0.53 -1.5
283,352 - Psest_0267 0.53 -2.0
283,352 - Psest_0267 0.53 -1.3
283,459 + Psest_0267 0.66 -2.1
283,459 + Psest_0267 0.66 -3.1
283,460 - Psest_0267 0.66 -2.2
283,460 - Psest_0267 0.66 -1.8
283,630 + Psest_0267 0.88 -2.6
283,630 + Psest_0267 0.88 -2.4
283,630 + Psest_0267 0.88 -1.9
283,630 + Psest_0267 0.88 -1.5
283,630 + Psest_0267 0.88 -1.6
283,630 + Psest_0267 0.88 -1.4
283,631 - Psest_0267 0.88 -2.1
283,631 - Psest_0267 0.88 -2.7
283,631 - Psest_0267 0.88 +0.9
283,658 - -2.7
283,687 + -2.2
283,788 + +0.5
283,788 + -0.9
283,789 - -0.0
283,789 - -0.0
284,079 - Psest_0268 0.40 +0.4
284,142 + Psest_0268 0.49 -1.3
284,142 + Psest_0268 0.49 -0.1
284,142 + Psest_0268 0.49 -1.0
284,142 + Psest_0268 0.49 -0.0
284,142 + Psest_0268 0.49 -0.4
284,142 + Psest_0268 0.49 -0.2
284,143 - Psest_0268 0.49 +0.1
284,143 - Psest_0268 0.49 +0.2
284,143 - Psest_0268 0.49 -0.4
284,143 - Psest_0268 0.49 +0.0
284,319 - Psest_0268 0.73 +0.2
284,349 + Psest_0268 0.77 +1.9
284,349 + Psest_0268 0.77 -0.2
284,350 - Psest_0268 0.78 +0.9
284,350 - Psest_0268 0.78 -0.8
284,350 - Psest_0268 0.78 -0.2
284,350 - Psest_0268 0.78 -0.4
284,479 + -0.6
284,537 - -0.9
284,537 - -1.3
284,537 - -0.4
284,538 + -0.0
284,608 + -1.2
284,668 + +0.1
284,668 + +0.4
284,668 + +0.7
284,668 + +0.7
284,669 - +1.1
284,669 - +0.8
284,669 - +1.3
284,669 - -1.3
284,669 - -0.4
284,669 - +1.3
284,670 + +1.9
284,670 + +0.5
284,670 + +0.1
284,671 - -1.5
284,671 - -0.7
284,671 - -0.1
284,671 - +0.5
284,735 - -0.6
284,743 + +0.1
284,743 + -0.5
284,805 - -0.3
284,805 - -0.4
284,974 + Psest_0269 0.17 -0.4
284,974 + Psest_0269 0.17 -0.5
284,974 + Psest_0269 0.17 -0.0
284,974 + Psest_0269 0.17 -0.0
284,974 + Psest_0269 0.17 -0.9
284,974 + Psest_0269 0.17 +0.2
284,974 + Psest_0269 0.17 -0.1
284,974 + Psest_0269 0.17 +0.9
284,974 + Psest_0269 0.17 +0.2
284,974 + Psest_0269 0.17 +0.5
285,112 + Psest_0269 0.28 -0.5
285,112 + Psest_0269 0.28 -0.4
285,112 + Psest_0269 0.28 -1.0
285,112 + Psest_0269 0.28 +0.2
285,113 - Psest_0269 0.28 -1.6
285,113 - Psest_0269 0.28 -0.8
285,113 - Psest_0269 0.28 -0.9
285,113 - Psest_0269 0.28 +0.5
285,113 - Psest_0269 0.28 +0.4
285,113 - Psest_0269 0.28 -0.3
285,113 - Psest_0269 0.28 -1.6
285,113 - Psest_0269 0.28 +0.4
285,113 - Psest_0269 0.28 +0.1
285,128 - Psest_0269 0.29 +0.2
285,237 + Psest_0269 0.37 -0.8
285,247 + Psest_0269 0.38 -0.5
285,247 + Psest_0269 0.38 -0.6
285,247 + Psest_0269 0.38 -0.5
285,247 + Psest_0269 0.38 -0.1
285,247 + Psest_0269 0.38 -1.1
285,247 + Psest_0269 0.38 -0.0
285,247 + Psest_0269 0.38 -1.5
285,247 + Psest_0269 0.38 -0.1
285,247 + Psest_0269 0.38 -1.8
285,248 - Psest_0269 0.38 +0.8
285,248 - Psest_0269 0.38 +1.9
285,248 - Psest_0269 0.38 +0.3
285,248 - Psest_0269 0.38 +1.1
285,248 - Psest_0269 0.38 -0.4
285,248 - Psest_0269 0.38 -0.8
285,248 - Psest_0269 0.38 +0.2
285,248 - Psest_0269 0.38 -1.0
285,248 - Psest_0269 0.38 +0.2
285,248 - Psest_0269 0.38 +1.1
285,310 + Psest_0269 0.43 +0.1
285,310 + Psest_0269 0.43 -0.7
285,310 + Psest_0269 0.43 +0.0
285,310 + Psest_0269 0.43 +1.7
285,310 + Psest_0269 0.43 +0.8
285,310 + Psest_0269 0.43 +1.5
285,310 + Psest_0269 0.43 -0.5
285,310 + Psest_0269 0.43 +0.0
285,310 + Psest_0269 0.43 -0.8
285,311 - Psest_0269 0.43 -0.8
285,311 - Psest_0269 0.43 -0.4
285,311 - Psest_0269 0.43 -0.3
285,311 - Psest_0269 0.43 -0.3
285,311 - Psest_0269 0.43 -0.1
285,311 - Psest_0269 0.43 -0.1
285,311 - Psest_0269 0.43 -0.9
285,311 - Psest_0269 0.43 +0.1
285,311 - Psest_0269 0.43 +0.2
285,311 - Psest_0269 0.43 +0.7
285,311 - Psest_0269 0.43 +0.0
285,334 + Psest_0269 0.44 -0.5
285,334 + Psest_0269 0.44 -0.3
285,334 + Psest_0269 0.44 -1.5
285,334 + Psest_0269 0.44 -0.9
285,334 + Psest_0269 0.44 -0.1
285,335 - Psest_0269 0.44 -1.3
285,335 - Psest_0269 0.44 +0.1
285,335 - Psest_0269 0.44 -0.0
285,335 - Psest_0269 0.44 -0.8
285,335 - Psest_0269 0.44 +0.5
285,335 - Psest_0269 0.44 -0.4
285,335 - Psest_0269 0.44 +0.2
285,335 - Psest_0269 0.44 -0.1
285,335 - Psest_0269 0.44 -0.7
285,335 - Psest_0269 0.44 -0.8
285,337 + Psest_0269 0.45 +0.2
285,337 + Psest_0269 0.45 -0.3
285,338 - Psest_0269 0.45 -0.2
285,338 - Psest_0269 0.45 +0.3
285,338 - Psest_0269 0.45 -0.7
285,338 - Psest_0269 0.45 +0.6
285,338 - Psest_0269 0.45 -1.3
285,338 - Psest_0269 0.45 +0.1
285,338 - Psest_0269 0.45 -0.5
285,338 - Psest_0269 0.45 +0.6
285,338 - Psest_0269 0.45 +1.5
285,338 - Psest_0269 0.45 +0.4
285,338 - Psest_0269 0.45 -0.4
285,343 + Psest_0269 0.45 +1.2
285,343 + Psest_0269 0.45 -0.3
285,364 + Psest_0269 0.47 -0.4
285,364 + Psest_0269 0.47 -0.3
285,364 + Psest_0269 0.47 -0.1
285,364 + Psest_0269 0.47 +0.6
285,364 + Psest_0269 0.47 -0.6
285,365 - Psest_0269 0.47 -0.2
285,365 - Psest_0269 0.47 -0.2
285,365 - Psest_0269 0.47 -0.1
285,365 - Psest_0269 0.47 +0.6
285,365 - Psest_0269 0.47 -0.9
285,392 - Psest_0269 0.49 -1.7
285,394 + Psest_0269 0.49 +0.6
285,394 + Psest_0269 0.49 +0.3
285,394 + Psest_0269 0.49 -0.7
285,394 + Psest_0269 0.49 +0.3
285,394 + Psest_0269 0.49 +0.1
285,394 + Psest_0269 0.49 -0.7
285,394 + Psest_0269 0.49 +0.0
285,395 - Psest_0269 0.49 +0.2
285,395 - Psest_0269 0.49 +1.2
285,395 - Psest_0269 0.49 +1.7
285,395 - Psest_0269 0.49 -0.8
285,395 - Psest_0269 0.49 -1.1
285,395 - Psest_0269 0.49 -0.1
285,395 - Psest_0269 0.49 -0.2
285,395 - Psest_0269 0.49 +1.0
285,401 - Psest_0269 0.49 +1.1
285,494 - Psest_0269 0.56 +0.4

Or see this region's nucleotide sequence