Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0796

Experiment: Def Dimethyl Sulfoxide 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0794 and Psest_0795 overlap by 4 nucleotidesPsest_0795 and Psest_0796 overlap by 4 nucleotidesPsest_0796 and Psest_0797 are separated by 25 nucleotidesPsest_0797 and Psest_0798 are separated by 45 nucleotides Psest_0794: Psest_0794 - parallel beta-helix repeat (two copies), at 869,216 to 870,526 _0794 Psest_0795: Psest_0795 - ABC-type multidrug transport system, ATPase component, at 870,523 to 871,449 _0795 Psest_0796: Psest_0796 - ABC-type transport system involved in multi-copper enzyme maturation, permease component, at 871,446 to 872,276 _0796 Psest_0797: Psest_0797 - Predicted lipoprotein involved in nitrous oxide reduction, at 872,302 to 872,874 _0797 Psest_0798: Psest_0798 - twin arginine-targeting protein translocase, TatA/E family, at 872,920 to 873,102 _0798 Position (kb) 871 872 873Strain fitness (log2 ratio) -2 -1 0 1 2at 870.548 kb on + strandat 870.548 kb on + strandat 870.779 kb on - strand, within Psest_0795at 870.907 kb on + strand, within Psest_0795at 870.907 kb on + strand, within Psest_0795at 870.907 kb on + strand, within Psest_0795at 870.908 kb on - strand, within Psest_0795at 870.908 kb on - strand, within Psest_0795at 870.908 kb on - strand, within Psest_0795at 871.024 kb on + strand, within Psest_0795at 871.399 kb on + strandat 871.400 kb on - strandat 871.402 kb on + strandat 871.402 kb on + strandat 871.402 kb on + strandat 871.402 kb on + strandat 871.402 kb on + strandat 871.402 kb on + strandat 871.402 kb on + strandat 871.403 kb on - strandat 871.403 kb on - strandat 871.403 kb on - strandat 871.403 kb on - strandat 871.403 kb on - strandat 871.403 kb on - strandat 871.403 kb on - strandat 871.403 kb on - strandat 871.668 kb on + strand, within Psest_0796at 871.722 kb on + strand, within Psest_0796at 871.929 kb on + strand, within Psest_0796at 871.929 kb on + strand, within Psest_0796at 871.930 kb on - strand, within Psest_0796at 871.930 kb on - strand, within Psest_0796at 871.930 kb on - strand, within Psest_0796at 872.107 kb on - strand, within Psest_0796at 872.302 kb on - strandat 872.302 kb on - strandat 872.302 kb on - strandat 872.581 kb on + strand, within Psest_0797at 872.581 kb on + strand, within Psest_0797at 872.581 kb on + strand, within Psest_0797at 872.581 kb on + strand, within Psest_0797at 872.581 kb on + strand, within Psest_0797at 872.582 kb on - strand, within Psest_0797at 872.582 kb on - strand, within Psest_0797at 872.582 kb on - strand, within Psest_0797at 872.582 kb on - strand, within Psest_0797at 872.653 kb on + strand, within Psest_0797at 872.653 kb on + strand, within Psest_0797at 872.654 kb on - strand, within Psest_0797at 872.654 kb on - strand, within Psest_0797at 872.654 kb on - strand, within Psest_0797at 872.654 kb on - strand, within Psest_0797at 872.654 kb on - strand, within Psest_0797at 872.656 kb on + strand, within Psest_0797at 872.656 kb on + strand, within Psest_0797at 872.656 kb on + strand, within Psest_0797at 872.656 kb on + strand, within Psest_0797at 872.656 kb on + strand, within Psest_0797at 872.656 kb on + strand, within Psest_0797at 872.656 kb on + strand, within Psest_0797at 872.656 kb on + strand, within Psest_0797at 872.656 kb on + strand, within Psest_0797at 872.656 kb on + strand, within Psest_0797at 872.657 kb on - strand, within Psest_0797at 872.657 kb on - strand, within Psest_0797at 872.657 kb on - strand, within Psest_0797at 872.657 kb on - strand, within Psest_0797at 872.657 kb on - strand, within Psest_0797at 872.657 kb on - strand, within Psest_0797at 872.657 kb on - strand, within Psest_0797at 872.657 kb on - strand, within Psest_0797at 872.657 kb on - strand, within Psest_0797at 872.657 kb on - strand, within Psest_0797at 872.657 kb on - strand, within Psest_0797at 872.657 kb on - strand, within Psest_0797at 872.657 kb on - strand, within Psest_0797at 872.657 kb on - strand, within Psest_0797at 872.657 kb on - strand, within Psest_0797at 872.657 kb on - strand, within Psest_0797at 872.912 kb on - strandat 872.928 kb on + strandat 873.100 kb on + strandat 873.100 kb on + strandat 873.101 kb on - strandat 873.191 kb on - strandat 873.270 kb on + strandat 873.271 kb on - strandat 873.271 kb on - strandat 873.271 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Dimethyl Sulfoxide 5 vol%
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870,548 + +0.0
870,548 + -1.0
870,779 - Psest_0795 0.28 +0.9
870,907 + Psest_0795 0.41 +0.9
870,907 + Psest_0795 0.41 -0.9
870,907 + Psest_0795 0.41 -0.4
870,908 - Psest_0795 0.42 -1.1
870,908 - Psest_0795 0.42 -0.2
870,908 - Psest_0795 0.42 +2.4
871,024 + Psest_0795 0.54 +1.0
871,399 + -1.1
871,400 - +0.8
871,402 + +0.1
871,402 + -0.3
871,402 + +1.1
871,402 + +0.4
871,402 + +0.3
871,402 + +0.7
871,402 + -0.4
871,403 - -0.9
871,403 - -0.0
871,403 - -1.4
871,403 - +0.8
871,403 - +1.5
871,403 - -1.1
871,403 - -0.0
871,403 - -0.3
871,668 + Psest_0796 0.27 -1.7
871,722 + Psest_0796 0.33 -0.2
871,929 + Psest_0796 0.58 -0.2
871,929 + Psest_0796 0.58 +0.3
871,930 - Psest_0796 0.58 -1.3
871,930 - Psest_0796 0.58 +1.0
871,930 - Psest_0796 0.58 -0.2
872,107 - Psest_0796 0.80 -1.5
872,302 - -1.0
872,302 - -1.6
872,302 - +2.4
872,581 + Psest_0797 0.49 +0.3
872,581 + Psest_0797 0.49 +0.3
872,581 + Psest_0797 0.49 -0.2
872,581 + Psest_0797 0.49 -0.4
872,581 + Psest_0797 0.49 -0.0
872,582 - Psest_0797 0.49 +0.3
872,582 - Psest_0797 0.49 -0.5
872,582 - Psest_0797 0.49 +1.4
872,582 - Psest_0797 0.49 -1.9
872,653 + Psest_0797 0.61 +0.8
872,653 + Psest_0797 0.61 -0.2
872,654 - Psest_0797 0.61 -1.2
872,654 - Psest_0797 0.61 -0.3
872,654 - Psest_0797 0.61 +1.8
872,654 - Psest_0797 0.61 -1.1
872,654 - Psest_0797 0.61 -1.1
872,656 + Psest_0797 0.62 +0.6
872,656 + Psest_0797 0.62 -1.2
872,656 + Psest_0797 0.62 -0.5
872,656 + Psest_0797 0.62 -0.0
872,656 + Psest_0797 0.62 -0.4
872,656 + Psest_0797 0.62 +0.4
872,656 + Psest_0797 0.62 -0.5
872,656 + Psest_0797 0.62 -0.3
872,656 + Psest_0797 0.62 -0.4
872,656 + Psest_0797 0.62 +0.5
872,657 - Psest_0797 0.62 -0.9
872,657 - Psest_0797 0.62 -0.2
872,657 - Psest_0797 0.62 +0.1
872,657 - Psest_0797 0.62 +1.8
872,657 - Psest_0797 0.62 -0.2
872,657 - Psest_0797 0.62 -0.7
872,657 - Psest_0797 0.62 +0.0
872,657 - Psest_0797 0.62 -0.4
872,657 - Psest_0797 0.62 +0.4
872,657 - Psest_0797 0.62 +0.4
872,657 - Psest_0797 0.62 +0.8
872,657 - Psest_0797 0.62 -0.9
872,657 - Psest_0797 0.62 +1.8
872,657 - Psest_0797 0.62 +0.0
872,657 - Psest_0797 0.62 +0.9
872,657 - Psest_0797 0.62 -1.2
872,912 - -0.5
872,928 + -1.2
873,100 + +0.0
873,100 + +0.2
873,101 - -0.4
873,191 - -0.8
873,270 + -0.7
873,271 - +0.5
873,271 - -0.5
873,271 - +0.4

Or see this region's nucleotide sequence