Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4100

Experiment: Def Dimethyl Sulfoxide 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4099 and Psest_4100 are separated by 181 nucleotidesPsest_4100 and Psest_4101 are separated by 113 nucleotides Psest_4099: Psest_4099 - TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component, at 4,278,977 to 4,280,080 _4099 Psest_4100: Psest_4100 - Uncharacterized protein conserved in bacteria, at 4,280,262 to 4,281,104 _4100 Psest_4101: Psest_4101 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 4,281,218 to 4,282,168 _4101 Position (kb) 4280 4281 4282Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4279.304 kb on + strand, within Psest_4099at 4279.305 kb on - strand, within Psest_4099at 4279.307 kb on + strand, within Psest_4099at 4279.308 kb on - strand, within Psest_4099at 4279.427 kb on + strand, within Psest_4099at 4279.427 kb on + strand, within Psest_4099at 4279.428 kb on - strand, within Psest_4099at 4279.491 kb on - strand, within Psest_4099at 4279.540 kb on + strand, within Psest_4099at 4279.703 kb on + strand, within Psest_4099at 4279.703 kb on + strand, within Psest_4099at 4279.703 kb on + strand, within Psest_4099at 4279.703 kb on + strand, within Psest_4099at 4279.703 kb on + strand, within Psest_4099at 4279.703 kb on + strand, within Psest_4099at 4279.703 kb on + strand, within Psest_4099at 4279.703 kb on + strand, within Psest_4099at 4279.703 kb on + strand, within Psest_4099at 4279.703 kb on + strand, within Psest_4099at 4279.703 kb on + strand, within Psest_4099at 4279.703 kb on + strand, within Psest_4099at 4279.703 kb on + strand, within Psest_4099at 4279.703 kb on + strand, within Psest_4099at 4279.704 kb on - strand, within Psest_4099at 4279.704 kb on - strand, within Psest_4099at 4279.704 kb on - strand, within Psest_4099at 4279.704 kb on - strand, within Psest_4099at 4279.704 kb on - strand, within Psest_4099at 4279.706 kb on + strand, within Psest_4099at 4279.706 kb on + strand, within Psest_4099at 4279.706 kb on + strand, within Psest_4099at 4279.706 kb on + strand, within Psest_4099at 4279.707 kb on - strand, within Psest_4099at 4279.707 kb on - strand, within Psest_4099at 4279.707 kb on - strand, within Psest_4099at 4279.707 kb on - strand, within Psest_4099at 4279.707 kb on - strand, within Psest_4099at 4279.707 kb on - strand, within Psest_4099at 4279.707 kb on - strand, within Psest_4099at 4279.707 kb on - strand, within Psest_4099at 4279.707 kb on - strand, within Psest_4099at 4279.707 kb on - strand, within Psest_4099at 4279.709 kb on + strand, within Psest_4099at 4279.709 kb on + strand, within Psest_4099at 4279.709 kb on + strand, within Psest_4099at 4279.709 kb on + strand, within Psest_4099at 4279.709 kb on + strand, within Psest_4099at 4279.709 kb on + strand, within Psest_4099at 4279.709 kb on + strand, within Psest_4099at 4279.709 kb on + strand, within Psest_4099at 4279.710 kb on - strand, within Psest_4099at 4279.710 kb on - strand, within Psest_4099at 4279.710 kb on - strand, within Psest_4099at 4279.710 kb on - strand, within Psest_4099at 4279.710 kb on - strand, within Psest_4099at 4279.710 kb on - strand, within Psest_4099at 4279.710 kb on - strand, within Psest_4099at 4279.710 kb on - strand, within Psest_4099at 4279.710 kb on - strand, within Psest_4099at 4279.710 kb on - strand, within Psest_4099at 4279.847 kb on + strand, within Psest_4099at 4279.847 kb on + strand, within Psest_4099at 4279.847 kb on + strand, within Psest_4099at 4279.847 kb on + strand, within Psest_4099at 4279.847 kb on + strand, within Psest_4099at 4279.847 kb on + strand, within Psest_4099at 4279.847 kb on + strand, within Psest_4099at 4279.847 kb on + strand, within Psest_4099at 4279.847 kb on + strand, within Psest_4099at 4279.847 kb on + strand, within Psest_4099at 4279.847 kb on + strand, within Psest_4099at 4279.847 kb on + strand, within Psest_4099at 4279.847 kb on + strand, within Psest_4099at 4279.847 kb on + strand, within Psest_4099at 4279.847 kb on + strand, within Psest_4099at 4279.847 kb on + strand, within Psest_4099at 4279.847 kb on + strand, within Psest_4099at 4279.847 kb on + strand, within Psest_4099at 4279.848 kb on - strand, within Psest_4099at 4279.848 kb on - strand, within Psest_4099at 4279.848 kb on - strand, within Psest_4099at 4279.848 kb on - strand, within Psest_4099at 4279.848 kb on - strand, within Psest_4099at 4279.848 kb on - strand, within Psest_4099at 4279.848 kb on - strand, within Psest_4099at 4279.848 kb on - strand, within Psest_4099at 4279.848 kb on - strand, within Psest_4099at 4279.848 kb on - strand, within Psest_4099at 4279.848 kb on - strand, within Psest_4099at 4279.848 kb on - strand, within Psest_4099at 4279.853 kb on + strand, within Psest_4099at 4279.853 kb on + strand, within Psest_4099at 4279.853 kb on + strand, within Psest_4099at 4279.853 kb on + strand, within Psest_4099at 4279.853 kb on + strand, within Psest_4099at 4279.853 kb on + strand, within Psest_4099at 4279.853 kb on + strand, within Psest_4099at 4279.854 kb on - strand, within Psest_4099at 4279.854 kb on - strand, within Psest_4099at 4279.854 kb on - strand, within Psest_4099at 4279.854 kb on - strand, within Psest_4099at 4280.066 kb on + strandat 4280.066 kb on + strandat 4280.066 kb on + strandat 4280.066 kb on + strandat 4280.066 kb on + strandat 4280.067 kb on - strandat 4280.067 kb on - strandat 4280.067 kb on - strandat 4280.067 kb on - strandat 4280.187 kb on + strandat 4280.187 kb on + strandat 4280.187 kb on + strandat 4280.187 kb on + strandat 4280.187 kb on + strandat 4280.187 kb on + strandat 4280.187 kb on + strandat 4280.187 kb on + strandat 4280.187 kb on + strandat 4280.188 kb on - strandat 4280.188 kb on - strandat 4280.188 kb on - strandat 4280.188 kb on - strandat 4280.188 kb on - strandat 4280.233 kb on + strandat 4280.297 kb on + strandat 4280.907 kb on + strand, within Psest_4100at 4280.907 kb on + strand, within Psest_4100at 4280.907 kb on + strand, within Psest_4100at 4280.907 kb on + strand, within Psest_4100at 4280.907 kb on + strand, within Psest_4100at 4280.908 kb on - strand, within Psest_4100at 4280.908 kb on - strand, within Psest_4100at 4280.908 kb on - strand, within Psest_4100at 4280.908 kb on - strand, within Psest_4100at 4280.908 kb on - strand, within Psest_4100at 4280.908 kb on - strand, within Psest_4100at 4280.908 kb on - strand, within Psest_4100at 4281.111 kb on + strandat 4281.112 kb on - strandat 4281.298 kb on - strandat 4281.319 kb on + strand, within Psest_4101at 4281.459 kb on + strand, within Psest_4101at 4281.459 kb on + strand, within Psest_4101at 4281.459 kb on + strand, within Psest_4101at 4281.459 kb on + strand, within Psest_4101at 4281.459 kb on + strand, within Psest_4101at 4281.459 kb on + strand, within Psest_4101at 4281.459 kb on + strand, within Psest_4101at 4281.460 kb on - strand, within Psest_4101at 4281.460 kb on - strand, within Psest_4101at 4281.460 kb on - strand, within Psest_4101at 4281.460 kb on - strand, within Psest_4101at 4281.460 kb on - strand, within Psest_4101at 4281.460 kb on - strand, within Psest_4101at 4281.460 kb on - strand, within Psest_4101at 4281.460 kb on - strand, within Psest_4101at 4281.460 kb on - strand, within Psest_4101at 4281.576 kb on + strand, within Psest_4101at 4281.576 kb on + strand, within Psest_4101at 4281.577 kb on - strand, within Psest_4101at 4281.577 kb on - strand, within Psest_4101at 4281.577 kb on - strand, within Psest_4101at 4281.577 kb on - strand, within Psest_4101at 4281.732 kb on + strand, within Psest_4101at 4281.732 kb on + strand, within Psest_4101at 4281.812 kb on + strand, within Psest_4101at 4282.008 kb on + strand, within Psest_4101at 4282.008 kb on + strand, within Psest_4101at 4282.008 kb on + strand, within Psest_4101at 4282.008 kb on + strand, within Psest_4101at 4282.008 kb on + strand, within Psest_4101at 4282.008 kb on + strand, within Psest_4101at 4282.008 kb on + strand, within Psest_4101at 4282.009 kb on - strand, within Psest_4101at 4282.009 kb on - strand, within Psest_4101at 4282.009 kb on - strand, within Psest_4101at 4282.009 kb on - strand, within Psest_4101at 4282.009 kb on - strand, within Psest_4101at 4282.009 kb on - strand, within Psest_4101at 4282.009 kb on - strand, within Psest_4101at 4282.009 kb on - strand, within Psest_4101at 4282.009 kb on - strand, within Psest_4101at 4282.011 kb on + strand, within Psest_4101at 4282.012 kb on - strand, within Psest_4101at 4282.012 kb on - strand, within Psest_4101

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Dimethyl Sulfoxide 5 vol%
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4,279,304 + Psest_4099 0.30 +0.3
4,279,305 - Psest_4099 0.30 +0.2
4,279,307 + Psest_4099 0.30 +0.9
4,279,308 - Psest_4099 0.30 -0.9
4,279,427 + Psest_4099 0.41 +1.3
4,279,427 + Psest_4099 0.41 +0.9
4,279,428 - Psest_4099 0.41 -1.4
4,279,491 - Psest_4099 0.47 -1.1
4,279,540 + Psest_4099 0.51 -0.4
4,279,703 + Psest_4099 0.66 +0.9
4,279,703 + Psest_4099 0.66 +0.6
4,279,703 + Psest_4099 0.66 +0.3
4,279,703 + Psest_4099 0.66 +1.2
4,279,703 + Psest_4099 0.66 +1.9
4,279,703 + Psest_4099 0.66 +0.3
4,279,703 + Psest_4099 0.66 +0.8
4,279,703 + Psest_4099 0.66 +0.4
4,279,703 + Psest_4099 0.66 -0.2
4,279,703 + Psest_4099 0.66 +0.9
4,279,703 + Psest_4099 0.66 +1.9
4,279,703 + Psest_4099 0.66 +1.3
4,279,703 + Psest_4099 0.66 +1.2
4,279,703 + Psest_4099 0.66 +0.9
4,279,704 - Psest_4099 0.66 -0.7
4,279,704 - Psest_4099 0.66 -0.1
4,279,704 - Psest_4099 0.66 +0.5
4,279,704 - Psest_4099 0.66 +0.2
4,279,704 - Psest_4099 0.66 +0.9
4,279,706 + Psest_4099 0.66 +0.1
4,279,706 + Psest_4099 0.66 +1.9
4,279,706 + Psest_4099 0.66 +1.9
4,279,706 + Psest_4099 0.66 +0.1
4,279,707 - Psest_4099 0.66 -0.9
4,279,707 - Psest_4099 0.66 -0.6
4,279,707 - Psest_4099 0.66 +0.5
4,279,707 - Psest_4099 0.66 +2.9
4,279,707 - Psest_4099 0.66 -0.1
4,279,707 - Psest_4099 0.66 -1.9
4,279,707 - Psest_4099 0.66 -0.7
4,279,707 - Psest_4099 0.66 +0.1
4,279,707 - Psest_4099 0.66 -0.9
4,279,707 - Psest_4099 0.66 +0.1
4,279,709 + Psest_4099 0.66 +0.3
4,279,709 + Psest_4099 0.66 +0.3
4,279,709 + Psest_4099 0.66 +0.9
4,279,709 + Psest_4099 0.66 +0.7
4,279,709 + Psest_4099 0.66 -1.7
4,279,709 + Psest_4099 0.66 +1.9
4,279,709 + Psest_4099 0.66 +1.4
4,279,709 + Psest_4099 0.66 -0.1
4,279,710 - Psest_4099 0.66 +0.6
4,279,710 - Psest_4099 0.66 -0.7
4,279,710 - Psest_4099 0.66 -0.1
4,279,710 - Psest_4099 0.66 +1.2
4,279,710 - Psest_4099 0.66 -0.3
4,279,710 - Psest_4099 0.66 +0.1
4,279,710 - Psest_4099 0.66 -2.0
4,279,710 - Psest_4099 0.66 -0.1
4,279,710 - Psest_4099 0.66 +0.4
4,279,710 - Psest_4099 0.66 -1.9
4,279,847 + Psest_4099 0.79 +1.5
4,279,847 + Psest_4099 0.79 -0.1
4,279,847 + Psest_4099 0.79 +0.9
4,279,847 + Psest_4099 0.79 +0.6
4,279,847 + Psest_4099 0.79 +0.3
4,279,847 + Psest_4099 0.79 +0.4
4,279,847 + Psest_4099 0.79 +0.6
4,279,847 + Psest_4099 0.79 +1.7
4,279,847 + Psest_4099 0.79 +0.9
4,279,847 + Psest_4099 0.79 +1.3
4,279,847 + Psest_4099 0.79 +0.9
4,279,847 + Psest_4099 0.79 -1.1
4,279,847 + Psest_4099 0.79 -0.1
4,279,847 + Psest_4099 0.79 -0.7
4,279,847 + Psest_4099 0.79 +0.5
4,279,847 + Psest_4099 0.79 +0.3
4,279,847 + Psest_4099 0.79 -0.1
4,279,847 + Psest_4099 0.79 -0.2
4,279,848 - Psest_4099 0.79 +0.2
4,279,848 - Psest_4099 0.79 -0.2
4,279,848 - Psest_4099 0.79 +0.3
4,279,848 - Psest_4099 0.79 +0.5
4,279,848 - Psest_4099 0.79 -0.5
4,279,848 - Psest_4099 0.79 -0.2
4,279,848 - Psest_4099 0.79 +0.1
4,279,848 - Psest_4099 0.79 -0.7
4,279,848 - Psest_4099 0.79 -1.1
4,279,848 - Psest_4099 0.79 +1.9
4,279,848 - Psest_4099 0.79 -1.0
4,279,848 - Psest_4099 0.79 -1.1
4,279,853 + Psest_4099 0.79 -0.1
4,279,853 + Psest_4099 0.79 +0.1
4,279,853 + Psest_4099 0.79 +0.8
4,279,853 + Psest_4099 0.79 +0.9
4,279,853 + Psest_4099 0.79 +0.6
4,279,853 + Psest_4099 0.79 +0.8
4,279,853 + Psest_4099 0.79 +2.9
4,279,854 - Psest_4099 0.79 -0.4
4,279,854 - Psest_4099 0.79 -1.2
4,279,854 - Psest_4099 0.79 -0.9
4,279,854 - Psest_4099 0.79 +0.9
4,280,066 + +0.6
4,280,066 + -0.1
4,280,066 + +1.9
4,280,066 + +0.3
4,280,066 + +0.3
4,280,067 - +1.9
4,280,067 - -0.4
4,280,067 - +0.0
4,280,067 - +0.5
4,280,187 + +1.9
4,280,187 + +1.3
4,280,187 + +0.9
4,280,187 + -1.7
4,280,187 + +1.9
4,280,187 + -0.9
4,280,187 + +0.1
4,280,187 + +0.1
4,280,187 + +2.5
4,280,188 - +0.9
4,280,188 - +0.3
4,280,188 - +0.0
4,280,188 - -0.2
4,280,188 - -0.1
4,280,233 + +1.9
4,280,297 + -0.8
4,280,907 + Psest_4100 0.77 +0.3
4,280,907 + Psest_4100 0.77 -0.7
4,280,907 + Psest_4100 0.77 +0.1
4,280,907 + Psest_4100 0.77 -1.1
4,280,907 + Psest_4100 0.77 -1.1
4,280,908 - Psest_4100 0.77 +1.9
4,280,908 - Psest_4100 0.77 +1.3
4,280,908 - Psest_4100 0.77 +0.3
4,280,908 - Psest_4100 0.77 -0.4
4,280,908 - Psest_4100 0.77 +0.3
4,280,908 - Psest_4100 0.77 +0.6
4,280,908 - Psest_4100 0.77 +0.3
4,281,111 + +1.1
4,281,112 - +0.9
4,281,298 - +1.9
4,281,319 + Psest_4101 0.11 +0.9
4,281,459 + Psest_4101 0.25 +1.9
4,281,459 + Psest_4101 0.25 -1.9
4,281,459 + Psest_4101 0.25 +0.7
4,281,459 + Psest_4101 0.25 -1.9
4,281,459 + Psest_4101 0.25 +1.3
4,281,459 + Psest_4101 0.25 -1.1
4,281,459 + Psest_4101 0.25 -0.9
4,281,460 - Psest_4101 0.25 +1.3
4,281,460 - Psest_4101 0.25 -0.1
4,281,460 - Psest_4101 0.25 +0.6
4,281,460 - Psest_4101 0.25 +1.9
4,281,460 - Psest_4101 0.25 +0.6
4,281,460 - Psest_4101 0.25 +0.3
4,281,460 - Psest_4101 0.25 -1.2
4,281,460 - Psest_4101 0.25 -0.1
4,281,460 - Psest_4101 0.25 -1.2
4,281,576 + Psest_4101 0.38 -0.7
4,281,576 + Psest_4101 0.38 -0.9
4,281,577 - Psest_4101 0.38 -0.1
4,281,577 - Psest_4101 0.38 +0.6
4,281,577 - Psest_4101 0.38 +0.3
4,281,577 - Psest_4101 0.38 +0.5
4,281,732 + Psest_4101 0.54 -0.1
4,281,732 + Psest_4101 0.54 +0.6
4,281,812 + Psest_4101 0.62 -0.4
4,282,008 + Psest_4101 0.83 -1.2
4,282,008 + Psest_4101 0.83 +0.3
4,282,008 + Psest_4101 0.83 +0.2
4,282,008 + Psest_4101 0.83 +0.8
4,282,008 + Psest_4101 0.83 +0.3
4,282,008 + Psest_4101 0.83 -0.5
4,282,008 + Psest_4101 0.83 -1.1
4,282,009 - Psest_4101 0.83 -2.1
4,282,009 - Psest_4101 0.83 +1.3
4,282,009 - Psest_4101 0.83 -0.4
4,282,009 - Psest_4101 0.83 +0.9
4,282,009 - Psest_4101 0.83 +1.9
4,282,009 - Psest_4101 0.83 +0.3
4,282,009 - Psest_4101 0.83 +0.8
4,282,009 - Psest_4101 0.83 -0.2
4,282,009 - Psest_4101 0.83 -0.4
4,282,011 + Psest_4101 0.83 -1.2
4,282,012 - Psest_4101 0.83 -1.5
4,282,012 - Psest_4101 0.83 +1.7

Or see this region's nucleotide sequence