Experiment: Def Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3709 and Psest_3710 are separated by 139 nucleotides Psest_3710 and Psest_3711 are separated by 107 nucleotides
Psest_3709: Psest_3709 - uroporphyrinogen decarboxylase, at 3,872,288 to 3,873,352
_3709
Psest_3710: Psest_3710 - glutamate synthase small subunit family protein, proteobacterial, at 3,873,492 to 3,874,910
_3710
Psest_3711: Psest_3711 - Glutamate synthase domain 2, at 3,875,018 to 3,879,466
_3711
Position (kb)
3873
3874
3875 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3873.369 kb on - strand at 3873.369 kb on - strand at 3873.429 kb on + strand at 3873.429 kb on + strand at 3873.430 kb on - strand at 3873.430 kb on - strand at 3873.430 kb on - strand at 3873.505 kb on + strand at 3873.626 kb on + strand at 3873.900 kb on - strand, within Psest_3710 at 3873.900 kb on - strand, within Psest_3710 at 3874.029 kb on + strand, within Psest_3710 at 3874.130 kb on - strand, within Psest_3710 at 3874.171 kb on + strand, within Psest_3710 at 3874.171 kb on + strand, within Psest_3710 at 3874.171 kb on + strand, within Psest_3710 at 3874.171 kb on + strand, within Psest_3710 at 3874.171 kb on + strand, within Psest_3710 at 3874.171 kb on + strand, within Psest_3710 at 3874.171 kb on + strand, within Psest_3710 at 3874.171 kb on + strand, within Psest_3710 at 3874.171 kb on + strand, within Psest_3710 at 3874.171 kb on + strand, within Psest_3710 at 3874.171 kb on + strand, within Psest_3710 at 3874.171 kb on + strand, within Psest_3710 at 3874.171 kb on + strand, within Psest_3710 at 3874.172 kb on - strand, within Psest_3710 at 3874.172 kb on - strand, within Psest_3710 at 3874.172 kb on - strand, within Psest_3710 at 3874.172 kb on - strand, within Psest_3710 at 3874.172 kb on - strand, within Psest_3710 at 3874.172 kb on - strand, within Psest_3710 at 3874.172 kb on - strand, within Psest_3710 at 3874.172 kb on - strand, within Psest_3710 at 3874.172 kb on - strand, within Psest_3710 at 3874.172 kb on - strand, within Psest_3710 at 3874.172 kb on - strand, within Psest_3710 at 3874.172 kb on - strand, within Psest_3710 at 3874.172 kb on - strand, within Psest_3710 at 3874.172 kb on - strand, within Psest_3710 at 3874.175 kb on + strand, within Psest_3710 at 3874.175 kb on + strand, within Psest_3710 at 3874.175 kb on + strand, within Psest_3710 at 3874.175 kb on + strand, within Psest_3710 at 3874.175 kb on + strand, within Psest_3710 at 3874.175 kb on + strand, within Psest_3710 at 3874.176 kb on - strand, within Psest_3710 at 3874.176 kb on - strand, within Psest_3710 at 3874.176 kb on - strand, within Psest_3710 at 3874.176 kb on - strand, within Psest_3710 at 3874.177 kb on + strand, within Psest_3710 at 3874.177 kb on + strand, within Psest_3710 at 3874.177 kb on + strand, within Psest_3710 at 3874.177 kb on + strand, within Psest_3710 at 3874.177 kb on + strand, within Psest_3710 at 3874.177 kb on + strand, within Psest_3710 at 3874.177 kb on + strand, within Psest_3710 at 3874.177 kb on + strand, within Psest_3710 at 3874.177 kb on + strand, within Psest_3710 at 3874.177 kb on + strand, within Psest_3710 at 3874.177 kb on + strand, within Psest_3710 at 3874.177 kb on + strand, within Psest_3710 at 3874.177 kb on + strand, within Psest_3710 at 3874.177 kb on + strand, within Psest_3710 at 3874.177 kb on + strand, within Psest_3710 at 3874.177 kb on + strand, within Psest_3710 at 3874.177 kb on + strand, within Psest_3710 at 3874.177 kb on + strand, within Psest_3710 at 3874.177 kb on + strand, within Psest_3710 at 3874.178 kb on - strand, within Psest_3710 at 3874.178 kb on - strand, within Psest_3710 at 3874.178 kb on - strand, within Psest_3710 at 3874.178 kb on - strand, within Psest_3710 at 3874.178 kb on - strand, within Psest_3710 at 3874.178 kb on - strand, within Psest_3710 at 3874.178 kb on - strand, within Psest_3710 at 3874.178 kb on - strand, within Psest_3710 at 3874.178 kb on - strand, within Psest_3710 at 3874.178 kb on - strand, within Psest_3710 at 3874.178 kb on - strand, within Psest_3710 at 3874.178 kb on - strand, within Psest_3710 at 3874.178 kb on - strand, within Psest_3710 at 3874.178 kb on - strand, within Psest_3710 at 3874.308 kb on + strand, within Psest_3710 at 3874.308 kb on + strand, within Psest_3710 at 3874.308 kb on + strand, within Psest_3710 at 3874.309 kb on - strand, within Psest_3710 at 3874.309 kb on - strand, within Psest_3710 at 3874.393 kb on - strand, within Psest_3710 at 3874.528 kb on + strand, within Psest_3710 at 3874.528 kb on + strand, within Psest_3710 at 3874.528 kb on + strand, within Psest_3710 at 3874.528 kb on + strand, within Psest_3710 at 3874.528 kb on + strand, within Psest_3710 at 3874.528 kb on + strand, within Psest_3710 at 3874.528 kb on + strand, within Psest_3710 at 3874.528 kb on + strand, within Psest_3710 at 3874.529 kb on - strand, within Psest_3710 at 3874.529 kb on - strand, within Psest_3710 at 3874.529 kb on - strand, within Psest_3710 at 3874.529 kb on - strand, within Psest_3710 at 3874.529 kb on - strand, within Psest_3710 at 3874.711 kb on + strand, within Psest_3710 at 3874.711 kb on + strand, within Psest_3710 at 3874.711 kb on + strand, within Psest_3710 at 3874.711 kb on + strand, within Psest_3710 at 3874.711 kb on + strand, within Psest_3710 at 3874.711 kb on + strand, within Psest_3710 at 3874.711 kb on + strand, within Psest_3710 at 3874.712 kb on - strand, within Psest_3710 at 3874.712 kb on - strand, within Psest_3710 at 3874.712 kb on - strand, within Psest_3710 at 3874.712 kb on - strand, within Psest_3710 at 3874.807 kb on + strand at 3874.808 kb on - strand at 3874.808 kb on - strand at 3874.942 kb on + strand at 3874.943 kb on - strand at 3874.943 kb on - strand at 3874.943 kb on - strand at 3874.943 kb on - strand at 3874.943 kb on - strand at 3874.943 kb on - strand at 3874.943 kb on - strand at 3874.943 kb on - strand at 3874.943 kb on - strand at 3874.943 kb on - strand at 3874.946 kb on + strand at 3874.946 kb on + strand at 3874.946 kb on + strand at 3874.947 kb on - strand at 3874.947 kb on - strand at 3875.100 kb on + strand at 3875.101 kb on - strand at 3875.157 kb on + strand at 3875.157 kb on + strand at 3875.157 kb on + strand at 3875.157 kb on + strand at 3875.157 kb on + strand at 3875.157 kb on + strand at 3875.158 kb on - strand at 3875.158 kb on - strand at 3875.358 kb on + strand at 3875.358 kb on + strand at 3875.358 kb on + strand at 3875.358 kb on + strand at 3875.358 kb on + strand at 3875.359 kb on - strand at 3875.359 kb on - strand at 3875.359 kb on - strand at 3875.472 kb on + strand, within Psest_3711 at 3875.474 kb on + strand, within Psest_3711 at 3875.474 kb on + strand, within Psest_3711 at 3875.474 kb on + strand, within Psest_3711 at 3875.474 kb on + strand, within Psest_3711 at 3875.474 kb on + strand, within Psest_3711 at 3875.474 kb on + strand, within Psest_3711 at 3875.474 kb on + strand, within Psest_3711 at 3875.474 kb on + strand, within Psest_3711 at 3875.474 kb on + strand, within Psest_3711 at 3875.474 kb on + strand, within Psest_3711 at 3875.474 kb on + strand, within Psest_3711 at 3875.474 kb on + strand, within Psest_3711 at 3875.474 kb on + strand, within Psest_3711 at 3875.474 kb on + strand, within Psest_3711 at 3875.475 kb on - strand, within Psest_3711 at 3875.475 kb on - strand, within Psest_3711 at 3875.475 kb on - strand, within Psest_3711 at 3875.475 kb on - strand, within Psest_3711 at 3875.475 kb on - strand, within Psest_3711 at 3875.475 kb on - strand, within Psest_3711 at 3875.475 kb on - strand, within Psest_3711 at 3875.574 kb on + strand, within Psest_3711 at 3875.598 kb on + strand, within Psest_3711 at 3875.598 kb on + strand, within Psest_3711 at 3875.599 kb on - strand, within Psest_3711 at 3875.599 kb on - strand, within Psest_3711
Per-strain Table
Position Strand Gene LocusTag Fraction Def Dimethyl Sulfoxide 5 vol% remove 3,873,369 - -1.3 3,873,369 - -0.1 3,873,429 + -0.8 3,873,429 + -0.2 3,873,430 - +0.0 3,873,430 - +0.1 3,873,430 - -0.4 3,873,505 + -1.8 3,873,626 + -1.4 3,873,900 - Psest_3710 0.29 -0.3 3,873,900 - Psest_3710 0.29 -2.6 3,874,029 + Psest_3710 0.38 -0.4 3,874,130 - Psest_3710 0.45 -1.3 3,874,171 + Psest_3710 0.48 -0.7 3,874,171 + Psest_3710 0.48 -2.5 3,874,171 + Psest_3710 0.48 +0.7 3,874,171 + Psest_3710 0.48 -0.3 3,874,171 + Psest_3710 0.48 -0.1 3,874,171 + Psest_3710 0.48 -0.1 3,874,171 + Psest_3710 0.48 +0.6 3,874,171 + Psest_3710 0.48 -1.7 3,874,171 + Psest_3710 0.48 -1.9 3,874,171 + Psest_3710 0.48 -1.1 3,874,171 + Psest_3710 0.48 +1.5 3,874,171 + Psest_3710 0.48 -1.6 3,874,171 + Psest_3710 0.48 -0.8 3,874,172 - Psest_3710 0.48 -1.0 3,874,172 - Psest_3710 0.48 -1.8 3,874,172 - Psest_3710 0.48 -0.8 3,874,172 - Psest_3710 0.48 +0.3 3,874,172 - Psest_3710 0.48 -1.7 3,874,172 - Psest_3710 0.48 -1.8 3,874,172 - Psest_3710 0.48 -0.7 3,874,172 - Psest_3710 0.48 +0.4 3,874,172 - Psest_3710 0.48 -0.7 3,874,172 - Psest_3710 0.48 -0.7 3,874,172 - Psest_3710 0.48 -0.4 3,874,172 - Psest_3710 0.48 -0.9 3,874,172 - Psest_3710 0.48 -1.5 3,874,172 - Psest_3710 0.48 -0.9 3,874,175 + Psest_3710 0.48 +0.4 3,874,175 + Psest_3710 0.48 -1.5 3,874,175 + Psest_3710 0.48 +0.2 3,874,175 + Psest_3710 0.48 +0.9 3,874,175 + Psest_3710 0.48 +0.7 3,874,175 + Psest_3710 0.48 -2.2 3,874,176 - Psest_3710 0.48 -0.4 3,874,176 - Psest_3710 0.48 -0.5 3,874,176 - Psest_3710 0.48 +0.1 3,874,176 - Psest_3710 0.48 -1.4 3,874,177 + Psest_3710 0.48 +0.0 3,874,177 + Psest_3710 0.48 -1.6 3,874,177 + Psest_3710 0.48 -1.1 3,874,177 + Psest_3710 0.48 -0.1 3,874,177 + Psest_3710 0.48 +1.9 3,874,177 + Psest_3710 0.48 -1.1 3,874,177 + Psest_3710 0.48 -1.3 3,874,177 + Psest_3710 0.48 -0.0 3,874,177 + Psest_3710 0.48 +0.3 3,874,177 + Psest_3710 0.48 -0.7 3,874,177 + Psest_3710 0.48 -0.1 3,874,177 + Psest_3710 0.48 -1.9 3,874,177 + Psest_3710 0.48 -0.5 3,874,177 + Psest_3710 0.48 -2.8 3,874,177 + Psest_3710 0.48 -0.9 3,874,177 + Psest_3710 0.48 -0.1 3,874,177 + Psest_3710 0.48 +0.6 3,874,177 + Psest_3710 0.48 -0.9 3,874,177 + Psest_3710 0.48 -0.1 3,874,178 - Psest_3710 0.48 -2.1 3,874,178 - Psest_3710 0.48 -0.4 3,874,178 - Psest_3710 0.48 +0.9 3,874,178 - Psest_3710 0.48 -0.9 3,874,178 - Psest_3710 0.48 +0.5 3,874,178 - Psest_3710 0.48 -0.4 3,874,178 - Psest_3710 0.48 -2.3 3,874,178 - Psest_3710 0.48 -0.4 3,874,178 - Psest_3710 0.48 -1.4 3,874,178 - Psest_3710 0.48 -0.6 3,874,178 - Psest_3710 0.48 +0.0 3,874,178 - Psest_3710 0.48 -0.8 3,874,178 - Psest_3710 0.48 -0.6 3,874,178 - Psest_3710 0.48 -1.9 3,874,308 + Psest_3710 0.58 +0.3 3,874,308 + Psest_3710 0.58 -0.1 3,874,308 + Psest_3710 0.58 -0.9 3,874,309 - Psest_3710 0.58 -0.7 3,874,309 - Psest_3710 0.58 -1.7 3,874,393 - Psest_3710 0.63 +0.9 3,874,528 + Psest_3710 0.73 -0.9 3,874,528 + Psest_3710 0.73 +1.3 3,874,528 + Psest_3710 0.73 -1.7 3,874,528 + Psest_3710 0.73 -0.5 3,874,528 + Psest_3710 0.73 -0.2 3,874,528 + Psest_3710 0.73 -1.5 3,874,528 + Psest_3710 0.73 -0.4 3,874,528 + Psest_3710 0.73 +0.3 3,874,529 - Psest_3710 0.73 -0.1 3,874,529 - Psest_3710 0.73 -2.1 3,874,529 - Psest_3710 0.73 -0.9 3,874,529 - Psest_3710 0.73 -0.3 3,874,529 - Psest_3710 0.73 -2.2 3,874,711 + Psest_3710 0.86 -1.1 3,874,711 + Psest_3710 0.86 -0.3 3,874,711 + Psest_3710 0.86 -1.1 3,874,711 + Psest_3710 0.86 -1.2 3,874,711 + Psest_3710 0.86 -1.7 3,874,711 + Psest_3710 0.86 -0.4 3,874,711 + Psest_3710 0.86 -0.0 3,874,712 - Psest_3710 0.86 -0.9 3,874,712 - Psest_3710 0.86 -0.5 3,874,712 - Psest_3710 0.86 -0.8 3,874,712 - Psest_3710 0.86 -0.4 3,874,807 + -2.5 3,874,808 - -1.4 3,874,808 - -1.6 3,874,942 + -1.1 3,874,943 - -0.7 3,874,943 - +0.3 3,874,943 - -0.2 3,874,943 - +0.2 3,874,943 - -0.7 3,874,943 - +0.1 3,874,943 - +0.1 3,874,943 - -0.3 3,874,943 - +0.0 3,874,943 - -0.6 3,874,946 + -1.5 3,874,946 + -1.1 3,874,946 + -0.9 3,874,947 - -1.1 3,874,947 - -1.1 3,875,100 + +0.9 3,875,101 - +0.1 3,875,157 + -2.2 3,875,157 + +0.7 3,875,157 + +0.3 3,875,157 + -0.6 3,875,157 + -0.4 3,875,157 + -0.6 3,875,158 - +1.9 3,875,158 - -1.1 3,875,358 + -0.9 3,875,358 + -0.0 3,875,358 + +0.6 3,875,358 + -1.2 3,875,358 + +1.6 3,875,359 - -0.7 3,875,359 - +1.9 3,875,359 - -0.3 3,875,472 + Psest_3711 0.10 -1.3 3,875,474 + Psest_3711 0.10 -0.7 3,875,474 + Psest_3711 0.10 +0.5 3,875,474 + Psest_3711 0.10 +0.9 3,875,474 + Psest_3711 0.10 -0.7 3,875,474 + Psest_3711 0.10 -1.4 3,875,474 + Psest_3711 0.10 -0.9 3,875,474 + Psest_3711 0.10 -0.2 3,875,474 + Psest_3711 0.10 -0.8 3,875,474 + Psest_3711 0.10 -0.5 3,875,474 + Psest_3711 0.10 -0.8 3,875,474 + Psest_3711 0.10 -0.0 3,875,474 + Psest_3711 0.10 -0.4 3,875,474 + Psest_3711 0.10 -1.6 3,875,474 + Psest_3711 0.10 -2.4 3,875,475 - Psest_3711 0.10 -1.9 3,875,475 - Psest_3711 0.10 -3.2 3,875,475 - Psest_3711 0.10 +0.3 3,875,475 - Psest_3711 0.10 +0.3 3,875,475 - Psest_3711 0.10 -0.7 3,875,475 - Psest_3711 0.10 -2.0 3,875,475 - Psest_3711 0.10 -0.6 3,875,574 + Psest_3711 0.12 -0.8 3,875,598 + Psest_3711 0.13 -1.1 3,875,598 + Psest_3711 0.13 -1.7 3,875,599 - Psest_3711 0.13 +0.2 3,875,599 - Psest_3711 0.13 -1.7
Or see this region's nucleotide sequence