Experiment: Def Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1793 and Psest_1794 are separated by 14 nucleotides Psest_1794 and Psest_1795 are separated by 2 nucleotides Psest_1795 and Psest_1796 are separated by 112 nucleotides
Psest_1793: Psest_1793 - Predicted divalent heavy-metal cations transporter, at 1,888,575 to 1,889,507
_1793
Psest_1794: Psest_1794 - Flagellar motor protein, at 1,889,522 to 1,890,262
_1794
Psest_1795: Psest_1795 - Flagellar motor component, at 1,890,265 to 1,891,074
_1795
Psest_1796: Psest_1796 - Predicted NAD/FAD-dependent oxidoreductase, at 1,891,187 to 1,892,173
_1796
Position (kb)
1889
1890
1891 Strain fitness (log2 ratio)
-2
-1
0
1 at 1888.542 kb on - strand at 1888.707 kb on - strand, within Psest_1793 at 1889.011 kb on - strand, within Psest_1793 at 1889.566 kb on + strand at 1889.566 kb on + strand at 1889.670 kb on + strand, within Psest_1794 at 1889.876 kb on - strand, within Psest_1794 at 1889.887 kb on + strand, within Psest_1794 at 1889.887 kb on + strand, within Psest_1794 at 1890.029 kb on - strand, within Psest_1794 at 1890.171 kb on + strand, within Psest_1794 at 1890.171 kb on + strand, within Psest_1794 at 1890.172 kb on - strand, within Psest_1794 at 1890.362 kb on + strand, within Psest_1795 at 1890.362 kb on + strand, within Psest_1795 at 1890.362 kb on + strand, within Psest_1795 at 1890.362 kb on + strand, within Psest_1795 at 1890.362 kb on + strand, within Psest_1795 at 1890.363 kb on - strand, within Psest_1795 at 1890.363 kb on - strand, within Psest_1795 at 1890.363 kb on - strand, within Psest_1795 at 1890.406 kb on + strand, within Psest_1795 at 1890.620 kb on + strand, within Psest_1795 at 1890.621 kb on - strand, within Psest_1795 at 1890.621 kb on - strand, within Psest_1795 at 1890.621 kb on - strand, within Psest_1795 at 1890.825 kb on + strand, within Psest_1795 at 1890.825 kb on + strand, within Psest_1795 at 1890.825 kb on + strand, within Psest_1795 at 1890.826 kb on - strand, within Psest_1795 at 1890.826 kb on - strand, within Psest_1795 at 1890.826 kb on - strand, within Psest_1795 at 1890.826 kb on - strand, within Psest_1795 at 1890.826 kb on - strand, within Psest_1795 at 1890.826 kb on - strand, within Psest_1795 at 1890.826 kb on - strand, within Psest_1795 at 1890.826 kb on - strand, within Psest_1795 at 1890.857 kb on + strand, within Psest_1795 at 1890.857 kb on + strand, within Psest_1795 at 1890.857 kb on + strand, within Psest_1795 at 1890.858 kb on - strand, within Psest_1795 at 1890.858 kb on - strand, within Psest_1795
Per-strain Table
Position Strand Gene LocusTag Fraction Def Dimethyl Sulfoxide 5 vol% remove 1,888,542 - -0.0 1,888,707 - Psest_1793 0.14 +0.4 1,889,011 - Psest_1793 0.47 -0.1 1,889,566 + -0.0 1,889,566 + +1.0 1,889,670 + Psest_1794 0.20 -0.2 1,889,876 - Psest_1794 0.48 -1.7 1,889,887 + Psest_1794 0.49 -0.8 1,889,887 + Psest_1794 0.49 -0.9 1,890,029 - Psest_1794 0.68 -1.0 1,890,171 + Psest_1794 0.88 -0.4 1,890,171 + Psest_1794 0.88 -0.9 1,890,172 - Psest_1794 0.88 -1.8 1,890,362 + Psest_1795 0.12 -1.0 1,890,362 + Psest_1795 0.12 +0.0 1,890,362 + Psest_1795 0.12 +1.0 1,890,362 + Psest_1795 0.12 -1.5 1,890,362 + Psest_1795 0.12 -0.5 1,890,363 - Psest_1795 0.12 +1.2 1,890,363 - Psest_1795 0.12 -0.5 1,890,363 - Psest_1795 0.12 -0.4 1,890,406 + Psest_1795 0.17 +0.2 1,890,620 + Psest_1795 0.44 -0.1 1,890,621 - Psest_1795 0.44 -0.9 1,890,621 - Psest_1795 0.44 +1.0 1,890,621 - Psest_1795 0.44 -0.2 1,890,825 + Psest_1795 0.69 -1.4 1,890,825 + Psest_1795 0.69 -0.3 1,890,825 + Psest_1795 0.69 -1.8 1,890,826 - Psest_1795 0.69 +1.0 1,890,826 - Psest_1795 0.69 +0.1 1,890,826 - Psest_1795 0.69 -0.3 1,890,826 - Psest_1795 0.69 +0.0 1,890,826 - Psest_1795 0.69 +0.4 1,890,826 - Psest_1795 0.69 -0.3 1,890,826 - Psest_1795 0.69 -0.1 1,890,826 - Psest_1795 0.69 -0.3 1,890,857 + Psest_1795 0.73 +0.9 1,890,857 + Psest_1795 0.73 -0.1 1,890,857 + Psest_1795 0.73 -0.8 1,890,858 - Psest_1795 0.73 -0.8 1,890,858 - Psest_1795 0.73 -1.8
Or see this region's nucleotide sequence