Experiment: Def Fusidic 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0908 and Psest_0909 overlap by 1 nucleotides Psest_0909 and Psest_0910 are separated by 51 nucleotides Psest_0910 and Psest_0911 are separated by 94 nucleotides
Psest_0908: Psest_0908 - hypothetical protein, at 986,202 to 986,606
_0908
Psest_0909: Psest_0909 - hypothetical protein, at 986,606 to 986,920
_0909
Psest_0910: Psest_0910 - hypothetical protein, at 986,972 to 987,343
_0910
Psest_0911: Psest_0911 - Inhibitor of the KinA pathway to sporulation, predicted exonuclease, at 987,438 to 988,091
_0911
Position (kb) 986
987 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 985.240 kb on - strand at 985.299 kb on - strand at 985.302 kb on + strand at 985.307 kb on + strand at 985.307 kb on + strand at 985.307 kb on + strand at 985.307 kb on + strand at 985.307 kb on + strand at 985.307 kb on + strand at 985.307 kb on + strand at 985.307 kb on + strand at 985.308 kb on - strand at 985.308 kb on - strand at 985.308 kb on - strand at 985.308 kb on - strand at 985.308 kb on - strand at 985.308 kb on - strand at 985.308 kb on - strand at 985.308 kb on - strand at 985.308 kb on - strand at 985.308 kb on - strand at 985.308 kb on - strand at 985.308 kb on - strand at 985.308 kb on - strand at 985.311 kb on + strand at 985.311 kb on + strand at 985.311 kb on + strand at 985.311 kb on + strand at 985.312 kb on - strand at 985.312 kb on - strand at 985.312 kb on - strand at 985.312 kb on - strand at 985.312 kb on - strand at 985.312 kb on - strand at 985.312 kb on - strand at 985.312 kb on - strand at 985.361 kb on + strand at 985.362 kb on - strand at 985.394 kb on + strand at 985.394 kb on + strand at 985.394 kb on + strand at 985.395 kb on - strand at 985.397 kb on - strand at 985.397 kb on - strand at 985.405 kb on - strand at 985.422 kb on - strand at 985.435 kb on - strand at 985.498 kb on - strand at 985.498 kb on - strand at 985.498 kb on - strand at 985.498 kb on - strand at 985.498 kb on - strand at 985.498 kb on - strand at 985.501 kb on + strand at 985.502 kb on - strand at 985.502 kb on - strand at 985.509 kb on + strand at 985.510 kb on - strand at 985.510 kb on - strand at 985.510 kb on - strand at 985.510 kb on - strand at 985.510 kb on - strand at 985.510 kb on - strand at 985.516 kb on + strand at 985.516 kb on + strand at 985.517 kb on - strand at 985.536 kb on - strand at 985.566 kb on - strand at 985.572 kb on + strand at 985.602 kb on + strand at 985.603 kb on - strand at 985.603 kb on - strand at 985.603 kb on - strand at 985.603 kb on - strand at 985.603 kb on - strand at 985.741 kb on + strand at 985.741 kb on + strand at 985.742 kb on - strand at 985.742 kb on - strand at 985.742 kb on - strand at 985.742 kb on - strand at 985.758 kb on + strand at 985.759 kb on - strand at 985.759 kb on - strand at 985.759 kb on - strand at 985.759 kb on - strand at 985.780 kb on + strand at 985.846 kb on - strand at 985.848 kb on - strand at 985.978 kb on - strand at 986.017 kb on - strand at 986.021 kb on - strand at 986.082 kb on - strand at 986.122 kb on + strand at 986.129 kb on + strand at 986.130 kb on - strand at 986.179 kb on + strand at 986.179 kb on + strand at 986.180 kb on - strand at 986.190 kb on + strand at 986.221 kb on + strand at 986.226 kb on + strand at 986.226 kb on + strand at 986.227 kb on - strand at 986.424 kb on + strand, within Psest_0908 at 986.424 kb on + strand, within Psest_0908 at 986.424 kb on + strand, within Psest_0908 at 986.424 kb on + strand, within Psest_0908 at 986.424 kb on + strand, within Psest_0908 at 986.425 kb on - strand, within Psest_0908 at 986.442 kb on + strand, within Psest_0908 at 986.442 kb on + strand, within Psest_0908 at 986.442 kb on + strand, within Psest_0908 at 986.443 kb on - strand, within Psest_0908 at 986.484 kb on - strand, within Psest_0908 at 986.484 kb on - strand, within Psest_0908 at 986.484 kb on - strand, within Psest_0908 at 986.534 kb on + strand, within Psest_0908 at 986.534 kb on + strand, within Psest_0908 at 986.534 kb on + strand, within Psest_0908 at 986.541 kb on + strand, within Psest_0908 at 986.542 kb on - strand, within Psest_0908 at 986.542 kb on - strand, within Psest_0908 at 986.542 kb on - strand, within Psest_0908 at 986.585 kb on + strand at 986.586 kb on - strand at 986.620 kb on - strand at 986.637 kb on + strand at 986.637 kb on + strand at 986.637 kb on + strand at 986.680 kb on + strand, within Psest_0909 at 986.681 kb on - strand, within Psest_0909 at 986.681 kb on - strand, within Psest_0909 at 986.814 kb on - strand, within Psest_0909 at 986.835 kb on + strand, within Psest_0909 at 986.835 kb on + strand, within Psest_0909 at 986.835 kb on + strand, within Psest_0909 at 986.835 kb on + strand, within Psest_0909 at 986.835 kb on + strand, within Psest_0909 at 986.836 kb on - strand, within Psest_0909 at 986.836 kb on - strand, within Psest_0909 at 986.836 kb on - strand, within Psest_0909 at 986.836 kb on - strand, within Psest_0909 at 986.836 kb on - strand, within Psest_0909 at 986.836 kb on - strand, within Psest_0909 at 986.836 kb on - strand, within Psest_0909 at 986.873 kb on + strand, within Psest_0909 at 986.873 kb on + strand, within Psest_0909 at 986.873 kb on + strand, within Psest_0909 at 986.874 kb on - strand, within Psest_0909 at 986.888 kb on - strand, within Psest_0909 at 986.904 kb on - strand at 987.012 kb on + strand, within Psest_0910 at 987.013 kb on - strand, within Psest_0910 at 987.013 kb on - strand, within Psest_0910 at 987.041 kb on - strand, within Psest_0910 at 987.083 kb on + strand, within Psest_0910 at 987.140 kb on + strand, within Psest_0910 at 987.140 kb on + strand, within Psest_0910 at 987.140 kb on + strand, within Psest_0910 at 987.141 kb on - strand, within Psest_0910 at 987.141 kb on - strand, within Psest_0910 at 987.183 kb on + strand, within Psest_0910 at 987.183 kb on + strand, within Psest_0910 at 987.184 kb on - strand, within Psest_0910 at 987.184 kb on - strand, within Psest_0910 at 987.242 kb on + strand, within Psest_0910 at 987.242 kb on + strand, within Psest_0910 at 987.242 kb on + strand, within Psest_0910 at 987.242 kb on + strand, within Psest_0910 at 987.242 kb on + strand, within Psest_0910 at 987.242 kb on + strand, within Psest_0910 at 987.242 kb on + strand, within Psest_0910 at 987.242 kb on + strand, within Psest_0910 at 987.243 kb on - strand, within Psest_0910 at 987.243 kb on - strand, within Psest_0910 at 987.243 kb on - strand, within Psest_0910 at 987.243 kb on - strand, within Psest_0910 at 987.243 kb on - strand, within Psest_0910 at 987.315 kb on + strand at 987.362 kb on - strand at 987.362 kb on - strand at 987.364 kb on + strand at 987.364 kb on + strand at 987.365 kb on - strand at 987.367 kb on - strand at 987.405 kb on + strand at 987.406 kb on - strand at 987.406 kb on - strand at 987.406 kb on - strand at 987.445 kb on + strand at 987.503 kb on - strand at 987.537 kb on + strand, within Psest_0911 at 987.577 kb on + strand, within Psest_0911 at 987.577 kb on + strand, within Psest_0911 at 987.577 kb on + strand, within Psest_0911 at 987.577 kb on + strand, within Psest_0911 at 987.578 kb on - strand, within Psest_0911 at 987.578 kb on - strand, within Psest_0911
Per-strain Table
Position Strand Gene LocusTag Fraction Def Fusidic 0.064 mg/ml remove 985,240 - -0.4 985,299 - +0.6 985,302 + +0.1 985,307 + +1.6 985,307 + +1.0 985,307 + -0.7 985,307 + +0.8 985,307 + +2.4 985,307 + +1.5 985,307 + +0.2 985,307 + +0.6 985,308 - +0.0 985,308 - -0.1 985,308 - -0.7 985,308 - +1.2 985,308 - -0.3 985,308 - +0.6 985,308 - +0.1 985,308 - -0.2 985,308 - +0.0 985,308 - +1.8 985,308 - -0.9 985,308 - +0.2 985,308 - -1.6 985,311 + +0.1 985,311 + -1.2 985,311 + -1.2 985,311 + -0.8 985,312 - -0.3 985,312 - +0.7 985,312 - -0.2 985,312 - -0.3 985,312 - -0.7 985,312 - -0.6 985,312 - -0.3 985,312 - +0.1 985,361 + -0.1 985,362 - +0.6 985,394 + +1.1 985,394 + +0.7 985,394 + -0.2 985,395 - +0.2 985,397 - -0.8 985,397 - -0.0 985,405 - +1.0 985,422 - +1.1 985,435 - -0.3 985,498 - -0.4 985,498 - +0.4 985,498 - +0.7 985,498 - +0.2 985,498 - +0.3 985,498 - +0.1 985,501 + +0.4 985,502 - +0.8 985,502 - -0.4 985,509 + +0.7 985,510 - -0.0 985,510 - -0.3 985,510 - +0.2 985,510 - -2.1 985,510 - +0.0 985,510 - +1.2 985,516 + +0.2 985,516 + -1.6 985,517 - +0.4 985,536 - -0.0 985,566 - -0.7 985,572 + -0.3 985,602 + +0.2 985,603 - +0.2 985,603 - -3.0 985,603 - -1.4 985,603 - +0.3 985,603 - -0.2 985,741 + -0.3 985,741 + +0.4 985,742 - +0.3 985,742 - -0.3 985,742 - +0.3 985,742 - -0.1 985,758 + -1.8 985,759 - -1.0 985,759 - -0.0 985,759 - -0.3 985,759 - +0.2 985,780 + -0.6 985,846 - -1.2 985,848 - +0.3 985,978 - +0.0 986,017 - +0.5 986,021 - -0.4 986,082 - -0.8 986,122 + -0.8 986,129 + -1.9 986,130 - +0.5 986,179 + +0.1 986,179 + -0.1 986,180 - +1.2 986,190 + +0.6 986,221 + +0.2 986,226 + +0.1 986,226 + +0.1 986,227 - +0.2 986,424 + Psest_0908 0.55 +0.5 986,424 + Psest_0908 0.55 +0.5 986,424 + Psest_0908 0.55 +1.9 986,424 + Psest_0908 0.55 +0.4 986,424 + Psest_0908 0.55 +1.1 986,425 - Psest_0908 0.55 +1.4 986,442 + Psest_0908 0.59 -0.9 986,442 + Psest_0908 0.59 -0.3 986,442 + Psest_0908 0.59 +0.1 986,443 - Psest_0908 0.60 -0.1 986,484 - Psest_0908 0.70 +0.7 986,484 - Psest_0908 0.70 -0.0 986,484 - Psest_0908 0.70 +1.1 986,534 + Psest_0908 0.82 +0.7 986,534 + Psest_0908 0.82 +1.2 986,534 + Psest_0908 0.82 +1.6 986,541 + Psest_0908 0.84 +0.6 986,542 - Psest_0908 0.84 +0.1 986,542 - Psest_0908 0.84 -0.6 986,542 - Psest_0908 0.84 -0.0 986,585 + -0.3 986,586 - +0.5 986,620 - +1.7 986,637 + -0.2 986,637 + -0.6 986,637 + +0.2 986,680 + Psest_0909 0.23 -0.6 986,681 - Psest_0909 0.24 +0.9 986,681 - Psest_0909 0.24 +0.3 986,814 - Psest_0909 0.66 +0.1 986,835 + Psest_0909 0.73 -0.0 986,835 + Psest_0909 0.73 -0.0 986,835 + Psest_0909 0.73 +1.1 986,835 + Psest_0909 0.73 +1.1 986,835 + Psest_0909 0.73 +0.2 986,836 - Psest_0909 0.73 -0.2 986,836 - Psest_0909 0.73 -0.7 986,836 - Psest_0909 0.73 -0.1 986,836 - Psest_0909 0.73 -0.4 986,836 - Psest_0909 0.73 +0.4 986,836 - Psest_0909 0.73 +0.8 986,836 - Psest_0909 0.73 +0.9 986,873 + Psest_0909 0.85 -0.2 986,873 + Psest_0909 0.85 -0.4 986,873 + Psest_0909 0.85 +0.0 986,874 - Psest_0909 0.85 -0.5 986,888 - Psest_0909 0.90 +0.1 986,904 - +0.8 987,012 + Psest_0910 0.11 -0.2 987,013 - Psest_0910 0.11 +0.5 987,013 - Psest_0910 0.11 +0.0 987,041 - Psest_0910 0.19 -1.1 987,083 + Psest_0910 0.30 -0.5 987,140 + Psest_0910 0.45 +0.2 987,140 + Psest_0910 0.45 +0.1 987,140 + Psest_0910 0.45 +0.8 987,141 - Psest_0910 0.45 -0.4 987,141 - Psest_0910 0.45 -0.2 987,183 + Psest_0910 0.57 +0.5 987,183 + Psest_0910 0.57 -0.0 987,184 - Psest_0910 0.57 +0.6 987,184 - Psest_0910 0.57 +0.5 987,242 + Psest_0910 0.73 +0.4 987,242 + Psest_0910 0.73 +0.5 987,242 + Psest_0910 0.73 -0.4 987,242 + Psest_0910 0.73 +0.3 987,242 + Psest_0910 0.73 -0.3 987,242 + Psest_0910 0.73 +0.7 987,242 + Psest_0910 0.73 -0.9 987,242 + Psest_0910 0.73 -0.4 987,243 - Psest_0910 0.73 -0.5 987,243 - Psest_0910 0.73 +0.1 987,243 - Psest_0910 0.73 -0.0 987,243 - Psest_0910 0.73 -1.2 987,243 - Psest_0910 0.73 +0.5 987,315 + -0.0 987,362 - -0.3 987,362 - -0.2 987,364 + +0.1 987,364 + +1.2 987,365 - +0.6 987,367 - +1.3 987,405 + +0.4 987,406 - -2.1 987,406 - +0.1 987,406 - +0.4 987,445 + -0.2 987,503 - +1.3 987,537 + Psest_0911 0.15 -0.1 987,577 + Psest_0911 0.21 -0.1 987,577 + Psest_0911 0.21 +0.5 987,577 + Psest_0911 0.21 -0.9 987,577 + Psest_0911 0.21 -0.8 987,578 - Psest_0911 0.21 +0.6 987,578 - Psest_0911 0.21 -0.2
Or see this region's nucleotide sequence