Experiment: Def Fusidic 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0082 and Psest_0083 are separated by 936 nucleotides Psest_0083 and Psest_0084 overlap by 4 nucleotides
Psest_0082: Psest_0082 - Domain of unknown function (DUF892)., at 83,019 to 83,738
_0082
Psest_0083: Psest_0083 - Uncharacterized conserved protein, at 84,675 to 85,082
_0083
Psest_0084: Psest_0084 - alpha-ketoglutarate TRAP transporter, 4TM/12TM components <small>(from data)</small>, at 85,079 to 87,103
_0084
Position (kb) 84
85
86 Strain fitness (log2 ratio) -2
-1
0
1
2 at 83.736 kb on + strand at 83.736 kb on + strand at 83.736 kb on + strand at 83.736 kb on + strand at 83.736 kb on + strand at 83.736 kb on + strand at 83.736 kb on + strand at 83.736 kb on + strand at 83.736 kb on + strand at 83.736 kb on + strand at 83.737 kb on - strand at 83.737 kb on - strand at 83.737 kb on - strand at 83.737 kb on - strand at 83.737 kb on - strand at 83.737 kb on - strand at 83.737 kb on - strand at 83.737 kb on - strand at 83.737 kb on - strand at 83.737 kb on - strand at 83.737 kb on - strand at 83.737 kb on - strand at 83.737 kb on - strand at 83.737 kb on - strand at 83.737 kb on - strand at 83.737 kb on - strand at 83.737 kb on - strand at 83.739 kb on + strand at 83.740 kb on - strand at 83.823 kb on - strand at 83.823 kb on - strand at 83.839 kb on + strand at 83.839 kb on + strand at 83.839 kb on + strand at 83.844 kb on + strand at 83.844 kb on + strand at 83.844 kb on + strand at 83.844 kb on + strand at 83.845 kb on - strand at 84.005 kb on - strand at 84.028 kb on + strand at 84.028 kb on + strand at 84.028 kb on + strand at 84.028 kb on + strand at 84.028 kb on + strand at 84.028 kb on + strand at 84.028 kb on + strand at 84.028 kb on + strand at 84.029 kb on - strand at 84.029 kb on - strand at 84.029 kb on - strand at 84.029 kb on - strand at 84.029 kb on - strand at 84.029 kb on - strand at 84.029 kb on - strand at 84.029 kb on - strand at 84.029 kb on - strand at 84.029 kb on - strand at 84.120 kb on + strand at 84.120 kb on + strand at 84.121 kb on - strand at 84.121 kb on - strand at 84.121 kb on - strand at 84.121 kb on - strand at 84.121 kb on - strand at 84.121 kb on - strand at 84.221 kb on + strand at 84.222 kb on - strand at 84.499 kb on - strand at 84.591 kb on - strand at 84.591 kb on - strand at 84.591 kb on - strand at 84.605 kb on - strand at 84.707 kb on + strand at 84.707 kb on + strand at 84.707 kb on + strand at 84.800 kb on - strand, within Psest_0083 at 84.800 kb on - strand, within Psest_0083 at 84.863 kb on - strand, within Psest_0083 at 84.971 kb on - strand, within Psest_0083 at 85.241 kb on + strand at 85.241 kb on + strand at 85.241 kb on + strand at 85.241 kb on + strand at 85.241 kb on + strand at 85.242 kb on - strand at 85.242 kb on - strand at 85.242 kb on - strand at 85.242 kb on - strand at 85.242 kb on - strand at 85.242 kb on - strand at 85.242 kb on - strand at 85.242 kb on - strand at 85.302 kb on + strand, within Psest_0084 at 85.302 kb on + strand, within Psest_0084 at 85.302 kb on + strand, within Psest_0084 at 85.302 kb on + strand, within Psest_0084 at 85.302 kb on + strand, within Psest_0084 at 85.302 kb on + strand, within Psest_0084 at 85.302 kb on + strand, within Psest_0084 at 85.303 kb on - strand, within Psest_0084 at 85.303 kb on - strand, within Psest_0084 at 85.303 kb on - strand, within Psest_0084 at 85.303 kb on - strand, within Psest_0084 at 85.303 kb on - strand, within Psest_0084 at 85.303 kb on - strand, within Psest_0084 at 85.303 kb on - strand, within Psest_0084 at 85.303 kb on - strand, within Psest_0084 at 85.350 kb on + strand, within Psest_0084 at 85.350 kb on + strand, within Psest_0084 at 85.350 kb on + strand, within Psest_0084 at 85.350 kb on + strand, within Psest_0084 at 85.350 kb on + strand, within Psest_0084 at 85.351 kb on - strand, within Psest_0084 at 85.351 kb on - strand, within Psest_0084 at 85.351 kb on - strand, within Psest_0084 at 85.351 kb on - strand, within Psest_0084 at 85.497 kb on + strand, within Psest_0084 at 85.497 kb on + strand, within Psest_0084 at 85.497 kb on + strand, within Psest_0084 at 85.497 kb on + strand, within Psest_0084 at 85.497 kb on + strand, within Psest_0084 at 85.498 kb on - strand, within Psest_0084 at 85.498 kb on - strand, within Psest_0084 at 85.578 kb on + strand, within Psest_0084 at 85.578 kb on + strand, within Psest_0084 at 85.578 kb on + strand, within Psest_0084 at 85.578 kb on + strand, within Psest_0084 at 85.578 kb on + strand, within Psest_0084 at 85.578 kb on + strand, within Psest_0084 at 85.578 kb on + strand, within Psest_0084 at 85.578 kb on + strand, within Psest_0084 at 85.578 kb on + strand, within Psest_0084 at 85.579 kb on - strand, within Psest_0084 at 85.678 kb on - strand, within Psest_0084 at 85.844 kb on + strand, within Psest_0084 at 85.845 kb on - strand, within Psest_0084
Per-strain Table
Position Strand Gene LocusTag Fraction Def Fusidic 0.064 mg/ml remove 83,736 + +0.0 83,736 + -0.4 83,736 + +0.4 83,736 + -0.3 83,736 + +0.2 83,736 + -1.0 83,736 + +0.9 83,736 + -1.7 83,736 + -0.6 83,736 + +0.3 83,737 - +0.3 83,737 - +0.1 83,737 - +0.6 83,737 - -0.4 83,737 - +0.1 83,737 - -0.4 83,737 - +0.4 83,737 - +0.9 83,737 - +0.6 83,737 - -0.7 83,737 - -0.6 83,737 - +1.0 83,737 - +1.0 83,737 - -0.2 83,737 - +2.2 83,737 - +1.4 83,737 - -0.4 83,739 + +1.4 83,740 - -1.0 83,823 - +0.6 83,823 - -1.1 83,839 + -0.8 83,839 + +0.0 83,839 + -0.5 83,844 + -0.6 83,844 + +0.1 83,844 + +1.0 83,844 + -1.2 83,845 - +0.6 84,005 - -0.2 84,028 + +0.5 84,028 + +1.4 84,028 + +0.8 84,028 + -0.2 84,028 + -1.7 84,028 + -0.1 84,028 + -0.3 84,028 + +0.4 84,029 - +1.0 84,029 - -0.4 84,029 - +1.1 84,029 - -0.3 84,029 - +0.4 84,029 - -1.8 84,029 - +0.6 84,029 - +0.7 84,029 - +0.9 84,029 - +0.0 84,120 + +0.8 84,120 + +0.3 84,121 - +0.0 84,121 - +1.8 84,121 - +0.6 84,121 - -1.0 84,121 - +0.2 84,121 - -0.3 84,221 + -0.1 84,222 - -2.0 84,499 - +0.6 84,591 - +0.1 84,591 - +0.0 84,591 - -0.0 84,605 - -0.4 84,707 + +1.0 84,707 + +0.0 84,707 + +0.6 84,800 - Psest_0083 0.31 -1.4 84,800 - Psest_0083 0.31 -0.4 84,863 - Psest_0083 0.46 -1.1 84,971 - Psest_0083 0.73 -0.3 85,241 + +0.0 85,241 + -0.7 85,241 + +0.1 85,241 + +0.0 85,241 + +0.0 85,242 - -0.7 85,242 - -1.9 85,242 - +1.8 85,242 - -0.4 85,242 - +1.0 85,242 - +0.7 85,242 - +0.5 85,242 - -0.1 85,302 + Psest_0084 0.11 +0.0 85,302 + Psest_0084 0.11 +0.6 85,302 + Psest_0084 0.11 -1.4 85,302 + Psest_0084 0.11 +1.4 85,302 + Psest_0084 0.11 +0.0 85,302 + Psest_0084 0.11 -0.5 85,302 + Psest_0084 0.11 +0.3 85,303 - Psest_0084 0.11 +1.1 85,303 - Psest_0084 0.11 -0.4 85,303 - Psest_0084 0.11 +1.1 85,303 - Psest_0084 0.11 -1.7 85,303 - Psest_0084 0.11 +1.4 85,303 - Psest_0084 0.11 +0.6 85,303 - Psest_0084 0.11 -1.4 85,303 - Psest_0084 0.11 +0.7 85,350 + Psest_0084 0.13 +0.6 85,350 + Psest_0084 0.13 +0.4 85,350 + Psest_0084 0.13 -1.2 85,350 + Psest_0084 0.13 +0.0 85,350 + Psest_0084 0.13 +0.4 85,351 - Psest_0084 0.13 -0.2 85,351 - Psest_0084 0.13 -0.1 85,351 - Psest_0084 0.13 -0.4 85,351 - Psest_0084 0.13 -1.6 85,497 + Psest_0084 0.21 -0.6 85,497 + Psest_0084 0.21 -0.8 85,497 + Psest_0084 0.21 +0.0 85,497 + Psest_0084 0.21 -0.0 85,497 + Psest_0084 0.21 +1.0 85,498 - Psest_0084 0.21 -0.6 85,498 - Psest_0084 0.21 -0.7 85,578 + Psest_0084 0.25 -0.9 85,578 + Psest_0084 0.25 +0.2 85,578 + Psest_0084 0.25 +1.4 85,578 + Psest_0084 0.25 +0.1 85,578 + Psest_0084 0.25 +0.7 85,578 + Psest_0084 0.25 +0.3 85,578 + Psest_0084 0.25 +0.1 85,578 + Psest_0084 0.25 +1.6 85,578 + Psest_0084 0.25 -0.4 85,579 - Psest_0084 0.25 -1.2 85,678 - Psest_0084 0.30 -1.0 85,844 + Psest_0084 0.38 +0.3 85,845 - Psest_0084 0.38 +0.0
Or see this region's nucleotide sequence