Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4259

Experiment: Def Fusidic 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4257 and Psest_4258 overlap by 4 nucleotidesPsest_4258 and Psest_4259 are separated by 117 nucleotidesPsest_4259 and Psest_4260 overlap by 4 nucleotides Psest_4257: Psest_4257 - ABC-type transport system involved in resistance to organic solvents, periplasmic component, at 4,444,861 to 4,445,799 _4257 Psest_4258: Psest_4258 - ABC-type uncharacterized transport system, auxiliary component, at 4,445,796 to 4,446,419 _4258 Psest_4259: Psest_4259 - Multidrug resistance efflux pump, at 4,446,537 to 4,447,613 _4259 Psest_4260: Psest_4260 - ABC-type multidrug transport system, ATPase component, at 4,447,610 to 4,450,351 _4260 Position (kb) 4446 4447 4448Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4445.895 kb on + strand, within Psest_4258at 4445.896 kb on - strand, within Psest_4258at 4445.896 kb on - strand, within Psest_4258at 4445.896 kb on - strand, within Psest_4258at 4446.039 kb on + strand, within Psest_4258at 4446.040 kb on - strand, within Psest_4258at 4446.198 kb on + strand, within Psest_4258at 4446.198 kb on + strand, within Psest_4258at 4446.199 kb on - strand, within Psest_4258at 4446.501 kb on + strandat 4446.526 kb on - strandat 4447.290 kb on + strand, within Psest_4259at 4447.290 kb on + strand, within Psest_4259at 4447.290 kb on + strand, within Psest_4259at 4447.290 kb on + strand, within Psest_4259at 4447.290 kb on + strand, within Psest_4259at 4447.290 kb on + strand, within Psest_4259at 4447.290 kb on + strand, within Psest_4259at 4447.291 kb on - strand, within Psest_4259at 4447.291 kb on - strand, within Psest_4259at 4447.291 kb on - strand, within Psest_4259at 4447.291 kb on - strand, within Psest_4259at 4447.291 kb on - strand, within Psest_4259at 4447.377 kb on + strand, within Psest_4259at 4447.378 kb on - strand, within Psest_4259at 4447.378 kb on - strand, within Psest_4259at 4447.378 kb on - strand, within Psest_4259at 4447.401 kb on + strand, within Psest_4259at 4447.401 kb on + strand, within Psest_4259at 4447.401 kb on + strand, within Psest_4259at 4447.401 kb on + strand, within Psest_4259at 4447.401 kb on + strand, within Psest_4259at 4447.401 kb on + strand, within Psest_4259at 4447.401 kb on + strand, within Psest_4259at 4447.401 kb on + strand, within Psest_4259at 4447.401 kb on + strand, within Psest_4259at 4447.402 kb on - strand, within Psest_4259at 4447.402 kb on - strand, within Psest_4259at 4447.402 kb on - strand, within Psest_4259at 4447.402 kb on - strand, within Psest_4259at 4447.402 kb on - strand, within Psest_4259at 4447.402 kb on - strand, within Psest_4259at 4447.402 kb on - strand, within Psest_4259at 4447.402 kb on - strand, within Psest_4259at 4447.402 kb on - strand, within Psest_4259at 4447.402 kb on - strand, within Psest_4259at 4447.402 kb on - strand, within Psest_4259at 4447.402 kb on - strand, within Psest_4259at 4447.402 kb on - strand, within Psest_4259at 4447.402 kb on - strand, within Psest_4259at 4447.402 kb on - strand, within Psest_4259at 4447.402 kb on - strand, within Psest_4259at 4447.402 kb on - strand, within Psest_4259at 4447.551 kb on + strandat 4447.868 kb on + strandat 4447.869 kb on - strandat 4447.869 kb on - strandat 4448.219 kb on + strand, within Psest_4260at 4448.219 kb on + strand, within Psest_4260at 4448.219 kb on + strand, within Psest_4260at 4448.219 kb on + strand, within Psest_4260at 4448.219 kb on + strand, within Psest_4260at 4448.220 kb on - strand, within Psest_4260at 4448.220 kb on - strand, within Psest_4260at 4448.220 kb on - strand, within Psest_4260at 4448.220 kb on - strand, within Psest_4260at 4448.220 kb on - strand, within Psest_4260at 4448.220 kb on - strand, within Psest_4260at 4448.220 kb on - strand, within Psest_4260at 4448.220 kb on - strand, within Psest_4260at 4448.221 kb on + strand, within Psest_4260at 4448.222 kb on - strand, within Psest_4260at 4448.222 kb on - strandat 4448.222 kb on - strand, within Psest_4260at 4448.222 kb on - strand, within Psest_4260at 4448.274 kb on + strand, within Psest_4260at 4448.274 kb on + strand, within Psest_4260at 4448.274 kb on + strand, within Psest_4260at 4448.275 kb on - strand, within Psest_4260at 4448.275 kb on - strand, within Psest_4260at 4448.275 kb on - strand, within Psest_4260at 4448.275 kb on - strand, within Psest_4260at 4448.275 kb on - strand, within Psest_4260at 4448.275 kb on - strand, within Psest_4260at 4448.275 kb on - strand, within Psest_4260at 4448.506 kb on - strand, within Psest_4260at 4448.506 kb on - strand, within Psest_4260at 4448.506 kb on - strand, within Psest_4260

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Fusidic 0.064 mg/ml
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4,445,895 + Psest_4258 0.16 +2.9
4,445,896 - Psest_4258 0.16 -0.2
4,445,896 - Psest_4258 0.16 +0.0
4,445,896 - Psest_4258 0.16 +1.6
4,446,039 + Psest_4258 0.39 +0.6
4,446,040 - Psest_4258 0.39 +0.0
4,446,198 + Psest_4258 0.64 +0.8
4,446,198 + Psest_4258 0.64 -0.5
4,446,199 - Psest_4258 0.65 +0.6
4,446,501 + -1.3
4,446,526 - +0.6
4,447,290 + Psest_4259 0.70 -0.1
4,447,290 + Psest_4259 0.70 -0.7
4,447,290 + Psest_4259 0.70 +1.6
4,447,290 + Psest_4259 0.70 +1.0
4,447,290 + Psest_4259 0.70 +1.0
4,447,290 + Psest_4259 0.70 -1.3
4,447,290 + Psest_4259 0.70 +0.6
4,447,291 - Psest_4259 0.70 +0.1
4,447,291 - Psest_4259 0.70 +1.6
4,447,291 - Psest_4259 0.70 -0.7
4,447,291 - Psest_4259 0.70 -0.7
4,447,291 - Psest_4259 0.70 -0.4
4,447,377 + Psest_4259 0.78 -2.7
4,447,378 - Psest_4259 0.78 -1.2
4,447,378 - Psest_4259 0.78 +0.2
4,447,378 - Psest_4259 0.78 -0.4
4,447,401 + Psest_4259 0.80 +0.8
4,447,401 + Psest_4259 0.80 -0.7
4,447,401 + Psest_4259 0.80 +0.6
4,447,401 + Psest_4259 0.80 -1.4
4,447,401 + Psest_4259 0.80 -1.5
4,447,401 + Psest_4259 0.80 -0.2
4,447,401 + Psest_4259 0.80 -0.5
4,447,401 + Psest_4259 0.80 +1.6
4,447,401 + Psest_4259 0.80 -2.1
4,447,402 - Psest_4259 0.80 +0.0
4,447,402 - Psest_4259 0.80 -1.0
4,447,402 - Psest_4259 0.80 -0.9
4,447,402 - Psest_4259 0.80 -0.9
4,447,402 - Psest_4259 0.80 +1.0
4,447,402 - Psest_4259 0.80 -0.7
4,447,402 - Psest_4259 0.80 +1.6
4,447,402 - Psest_4259 0.80 +0.9
4,447,402 - Psest_4259 0.80 -1.8
4,447,402 - Psest_4259 0.80 -0.4
4,447,402 - Psest_4259 0.80 +0.8
4,447,402 - Psest_4259 0.80 +0.0
4,447,402 - Psest_4259 0.80 +1.6
4,447,402 - Psest_4259 0.80 +0.0
4,447,402 - Psest_4259 0.80 +1.6
4,447,402 - Psest_4259 0.80 +0.5
4,447,402 - Psest_4259 0.80 +0.7
4,447,551 + -0.2
4,447,868 + -0.5
4,447,869 - +1.6
4,447,869 - +0.5
4,448,219 + Psest_4260 0.22 -0.4
4,448,219 + Psest_4260 0.22 -1.2
4,448,219 + Psest_4260 0.22 +0.7
4,448,219 + Psest_4260 0.22 -0.3
4,448,219 + Psest_4260 0.22 +1.6
4,448,220 - Psest_4260 0.22 +0.0
4,448,220 - Psest_4260 0.22 +0.9
4,448,220 - Psest_4260 0.22 -0.5
4,448,220 - Psest_4260 0.22 -1.4
4,448,220 - Psest_4260 0.22 +0.0
4,448,220 - Psest_4260 0.22 +0.1
4,448,220 - Psest_4260 0.22 -1.4
4,448,220 - Psest_4260 0.22 +0.3
4,448,221 + Psest_4260 0.22 +0.8
4,448,222 - Psest_4260 0.22 +0.6
4,448,222 - +0.6
4,448,222 - Psest_4260 0.22 -0.4
4,448,222 - Psest_4260 0.22 +2.9
4,448,274 + Psest_4260 0.24 +0.0
4,448,274 + Psest_4260 0.24 +1.0
4,448,274 + Psest_4260 0.24 -1.4
4,448,275 - Psest_4260 0.24 +0.2
4,448,275 - Psest_4260 0.24 +0.6
4,448,275 - Psest_4260 0.24 +0.0
4,448,275 - Psest_4260 0.24 -1.2
4,448,275 - Psest_4260 0.24 +1.0
4,448,275 - Psest_4260 0.24 +1.1
4,448,275 - Psest_4260 0.24 -1.0
4,448,506 - Psest_4260 0.33 -1.4
4,448,506 - Psest_4260 0.33 +0.3
4,448,506 - Psest_4260 0.33 -0.1

Or see this region's nucleotide sequence