Experiment: Def Fusidic 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3452 and Psest_3453 are separated by 160 nucleotides Psest_3453 and Psest_3454 are separated by 141 nucleotides Psest_3454 and Psest_3455 are separated by 10 nucleotides
Psest_3452: Psest_3452 - Zn-dependent hydrolases, including glyoxylases, at 3,623,815 to 3,625,182
_3452
Psest_3453: Psest_3453 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1, at 3,625,343 to 3,626,899
_3453
Psest_3454: Psest_3454 - Adenylate cyclase, at 3,627,041 to 3,627,445
_3454
Psest_3455: Psest_3455 - Dihaem cytochrome c., at 3,627,456 to 3,627,980
_3455
Position (kb)
3625
3626
3627 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3624.520 kb on + strand, within Psest_3452 at 3624.521 kb on - strand, within Psest_3452 at 3624.763 kb on + strand, within Psest_3452 at 3624.763 kb on + strand, within Psest_3452 at 3624.764 kb on - strand, within Psest_3452 at 3624.764 kb on - strand, within Psest_3452 at 3624.837 kb on - strand, within Psest_3452 at 3624.844 kb on + strand, within Psest_3452 at 3624.845 kb on - strand, within Psest_3452 at 3625.074 kb on - strand at 3625.347 kb on + strand at 3625.920 kb on + strand, within Psest_3453 at 3625.920 kb on + strand, within Psest_3453 at 3625.920 kb on + strand, within Psest_3453 at 3625.920 kb on + strand, within Psest_3453 at 3625.920 kb on + strand, within Psest_3453 at 3625.920 kb on + strand, within Psest_3453 at 3625.920 kb on + strand, within Psest_3453 at 3625.921 kb on - strand, within Psest_3453 at 3625.921 kb on - strand, within Psest_3453 at 3625.921 kb on - strand, within Psest_3453 at 3625.921 kb on - strand, within Psest_3453 at 3625.921 kb on - strand, within Psest_3453 at 3625.921 kb on - strand, within Psest_3453 at 3625.921 kb on - strand, within Psest_3453 at 3626.181 kb on + strand, within Psest_3453 at 3626.449 kb on - strand, within Psest_3453 at 3626.449 kb on - strand, within Psest_3453 at 3626.612 kb on - strand, within Psest_3453 at 3626.835 kb on + strand at 3626.917 kb on + strand at 3626.918 kb on - strand at 3626.935 kb on + strand at 3626.935 kb on + strand at 3626.936 kb on - strand at 3627.192 kb on - strand, within Psest_3454 at 3627.443 kb on + strand at 3627.443 kb on + strand at 3627.443 kb on + strand at 3627.444 kb on - strand at 3627.449 kb on + strand at 3627.450 kb on - strand at 3627.639 kb on + strand, within Psest_3455 at 3627.639 kb on + strand, within Psest_3455 at 3627.640 kb on - strand, within Psest_3455 at 3627.640 kb on - strand, within Psest_3455
Per-strain Table
Position Strand Gene LocusTag Fraction Def Fusidic 0.064 mg/ml remove 3,624,520 + Psest_3452 0.52 -0.0 3,624,521 - Psest_3452 0.52 +1.2 3,624,763 + Psest_3452 0.69 -0.8 3,624,763 + Psest_3452 0.69 -0.4 3,624,764 - Psest_3452 0.69 +0.3 3,624,764 - Psest_3452 0.69 -0.4 3,624,837 - Psest_3452 0.75 +1.0 3,624,844 + Psest_3452 0.75 -0.2 3,624,845 - Psest_3452 0.75 +1.2 3,625,074 - +0.6 3,625,347 + +1.6 3,625,920 + Psest_3453 0.37 -0.4 3,625,920 + Psest_3453 0.37 +1.6 3,625,920 + Psest_3453 0.37 +1.6 3,625,920 + Psest_3453 0.37 -0.8 3,625,920 + Psest_3453 0.37 +1.6 3,625,920 + Psest_3453 0.37 +0.6 3,625,920 + Psest_3453 0.37 -0.4 3,625,921 - Psest_3453 0.37 -0.4 3,625,921 - Psest_3453 0.37 +1.6 3,625,921 - Psest_3453 0.37 -0.8 3,625,921 - Psest_3453 0.37 -1.6 3,625,921 - Psest_3453 0.37 -0.0 3,625,921 - Psest_3453 0.37 -0.6 3,625,921 - Psest_3453 0.37 +0.6 3,626,181 + Psest_3453 0.54 -0.8 3,626,449 - Psest_3453 0.71 +0.6 3,626,449 - Psest_3453 0.71 +1.6 3,626,612 - Psest_3453 0.82 -0.0 3,626,835 + -0.8 3,626,917 + -1.6 3,626,918 - +0.6 3,626,935 + -0.4 3,626,935 + -0.8 3,626,936 - +1.6 3,627,192 - Psest_3454 0.37 +1.6 3,627,443 + +0.6 3,627,443 + +1.0 3,627,443 + +2.4 3,627,444 - -0.6 3,627,449 + +3.0 3,627,450 - +0.6 3,627,639 + Psest_3455 0.35 -0.2 3,627,639 + Psest_3455 0.35 -1.6 3,627,640 - Psest_3455 0.35 +0.9 3,627,640 - Psest_3455 0.35 +0.6
Or see this region's nucleotide sequence