Experiment: Def Fusidic 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2990 and Psest_2991 are separated by 49 nucleotides Psest_2991 and Psest_2992 are separated by 72 nucleotides Psest_2992 and Psest_2993 are separated by 112 nucleotides
Psest_2990: Psest_2990 - Threonine aldolase, at 3,181,193 to 3,182,218
_2990
Psest_2991: Psest_2991 - hypothetical protein, at 3,182,268 to 3,183,488
_2991
Psest_2992: Psest_2992 - Uncharacterized conserved protein, at 3,183,561 to 3,184,010
_2992
Psest_2993: Psest_2993 - hypothetical protein, at 3,184,123 to 3,184,527
_2993
Position (kb)
3182
3183
3184 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3181.378 kb on - strand, within Psest_2990 at 3181.378 kb on - strand, within Psest_2990 at 3181.378 kb on - strand, within Psest_2990 at 3181.496 kb on + strand, within Psest_2990 at 3181.771 kb on - strand, within Psest_2990 at 3181.798 kb on + strand, within Psest_2990 at 3181.798 kb on + strand, within Psest_2990 at 3181.799 kb on - strand, within Psest_2990 at 3181.799 kb on - strand, within Psest_2990 at 3181.799 kb on - strand, within Psest_2990 at 3181.953 kb on + strand, within Psest_2990 at 3181.954 kb on - strand, within Psest_2990 at 3181.954 kb on - strand, within Psest_2990 at 3181.954 kb on - strand, within Psest_2990 at 3181.954 kb on - strand, within Psest_2990 at 3181.954 kb on - strand, within Psest_2990 at 3181.954 kb on - strand, within Psest_2990 at 3181.954 kb on - strand, within Psest_2990 at 3181.954 kb on - strand, within Psest_2990 at 3181.954 kb on - strand, within Psest_2990 at 3181.954 kb on - strand, within Psest_2990 at 3181.954 kb on - strand, within Psest_2990 at 3181.959 kb on + strand, within Psest_2990 at 3181.959 kb on + strand, within Psest_2990 at 3181.959 kb on + strand, within Psest_2990 at 3181.959 kb on + strand, within Psest_2990 at 3181.964 kb on - strand, within Psest_2990 at 3181.964 kb on - strand, within Psest_2990 at 3181.964 kb on - strand, within Psest_2990 at 3181.986 kb on + strand, within Psest_2990 at 3181.986 kb on + strand, within Psest_2990 at 3181.986 kb on + strand, within Psest_2990 at 3181.986 kb on + strand, within Psest_2990 at 3181.986 kb on + strand, within Psest_2990 at 3181.986 kb on + strand, within Psest_2990 at 3181.986 kb on + strand, within Psest_2990 at 3181.987 kb on - strand, within Psest_2990 at 3181.987 kb on - strand, within Psest_2990 at 3181.987 kb on - strand, within Psest_2990 at 3182.035 kb on + strand, within Psest_2990 at 3182.036 kb on - strand, within Psest_2990 at 3182.036 kb on - strand, within Psest_2990 at 3182.036 kb on - strand, within Psest_2990 at 3182.036 kb on - strand, within Psest_2990 at 3182.187 kb on - strand at 3182.201 kb on + strand at 3182.202 kb on - strand at 3182.202 kb on - strand at 3182.409 kb on - strand, within Psest_2991 at 3182.590 kb on + strand, within Psest_2991 at 3182.590 kb on + strand, within Psest_2991 at 3182.590 kb on + strand, within Psest_2991 at 3182.590 kb on + strand, within Psest_2991 at 3182.590 kb on + strand, within Psest_2991 at 3182.590 kb on + strand, within Psest_2991 at 3182.590 kb on + strand, within Psest_2991 at 3182.591 kb on - strand, within Psest_2991 at 3182.722 kb on + strand, within Psest_2991 at 3182.722 kb on + strand, within Psest_2991 at 3182.723 kb on - strand, within Psest_2991 at 3182.723 kb on - strand, within Psest_2991 at 3182.894 kb on + strand, within Psest_2991 at 3183.295 kb on + strand, within Psest_2991 at 3183.296 kb on - strand, within Psest_2991 at 3183.298 kb on + strand, within Psest_2991 at 3183.526 kb on + strand at 3183.526 kb on + strand at 3183.526 kb on + strand at 3183.527 kb on - strand at 3183.527 kb on - strand at 3183.556 kb on + strand at 3183.556 kb on + strand at 3183.556 kb on + strand at 3183.557 kb on - strand at 3183.557 kb on - strand at 3183.557 kb on - strand at 3183.557 kb on - strand at 3183.557 kb on - strand at 3183.707 kb on + strand, within Psest_2992 at 3183.872 kb on - strand, within Psest_2992 at 3183.872 kb on - strand, within Psest_2992 at 3183.872 kb on - strand, within Psest_2992 at 3183.874 kb on + strand, within Psest_2992 at 3183.874 kb on + strand, within Psest_2992 at 3183.874 kb on + strand, within Psest_2992 at 3183.874 kb on + strand, within Psest_2992 at 3183.874 kb on + strand, within Psest_2992 at 3183.874 kb on + strand, within Psest_2992 at 3183.875 kb on - strand, within Psest_2992 at 3183.875 kb on - strand, within Psest_2992 at 3183.875 kb on - strand, within Psest_2992 at 3184.016 kb on + strand at 3184.016 kb on + strand at 3184.016 kb on + strand at 3184.016 kb on + strand at 3184.017 kb on - strand at 3184.017 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Fusidic 0.064 mg/ml remove 3,181,378 - Psest_2990 0.18 -0.3 3,181,378 - Psest_2990 0.18 -0.2 3,181,378 - Psest_2990 0.18 -0.2 3,181,496 + Psest_2990 0.30 -0.5 3,181,771 - Psest_2990 0.56 -0.1 3,181,798 + Psest_2990 0.59 +0.3 3,181,798 + Psest_2990 0.59 +0.3 3,181,799 - Psest_2990 0.59 +0.0 3,181,799 - Psest_2990 0.59 +0.5 3,181,799 - Psest_2990 0.59 +0.3 3,181,953 + Psest_2990 0.74 -2.7 3,181,954 - Psest_2990 0.74 -0.1 3,181,954 - Psest_2990 0.74 +0.5 3,181,954 - Psest_2990 0.74 +0.4 3,181,954 - Psest_2990 0.74 +0.7 3,181,954 - Psest_2990 0.74 -0.5 3,181,954 - Psest_2990 0.74 -0.3 3,181,954 - Psest_2990 0.74 +0.5 3,181,954 - Psest_2990 0.74 +0.5 3,181,954 - Psest_2990 0.74 -0.1 3,181,954 - Psest_2990 0.74 -0.0 3,181,954 - Psest_2990 0.74 -0.5 3,181,959 + Psest_2990 0.75 -0.1 3,181,959 + Psest_2990 0.75 +0.5 3,181,959 + Psest_2990 0.75 +0.0 3,181,959 + Psest_2990 0.75 -0.9 3,181,964 - Psest_2990 0.75 -0.5 3,181,964 - Psest_2990 0.75 -1.1 3,181,964 - Psest_2990 0.75 +0.4 3,181,986 + Psest_2990 0.77 +1.2 3,181,986 + Psest_2990 0.77 -0.8 3,181,986 + Psest_2990 0.77 -0.8 3,181,986 + Psest_2990 0.77 -0.8 3,181,986 + Psest_2990 0.77 -0.6 3,181,986 + Psest_2990 0.77 -1.0 3,181,986 + Psest_2990 0.77 +0.3 3,181,987 - Psest_2990 0.77 -0.3 3,181,987 - Psest_2990 0.77 +0.2 3,181,987 - Psest_2990 0.77 +0.8 3,182,035 + Psest_2990 0.82 -1.0 3,182,036 - Psest_2990 0.82 -0.5 3,182,036 - Psest_2990 0.82 +0.5 3,182,036 - Psest_2990 0.82 +0.6 3,182,036 - Psest_2990 0.82 -0.4 3,182,187 - +0.7 3,182,201 + +0.4 3,182,202 - -0.7 3,182,202 - +0.1 3,182,409 - Psest_2991 0.12 -2.2 3,182,590 + Psest_2991 0.26 -1.1 3,182,590 + Psest_2991 0.26 -2.5 3,182,590 + Psest_2991 0.26 +0.5 3,182,590 + Psest_2991 0.26 -2.6 3,182,590 + Psest_2991 0.26 -0.2 3,182,590 + Psest_2991 0.26 -1.8 3,182,590 + Psest_2991 0.26 +0.2 3,182,591 - Psest_2991 0.26 +0.0 3,182,722 + Psest_2991 0.37 -1.3 3,182,722 + Psest_2991 0.37 -0.4 3,182,723 - Psest_2991 0.37 -1.4 3,182,723 - Psest_2991 0.37 -1.3 3,182,894 + Psest_2991 0.51 -0.5 3,183,295 + Psest_2991 0.84 -1.7 3,183,296 - Psest_2991 0.84 -1.4 3,183,298 + Psest_2991 0.84 +0.4 3,183,526 + -0.5 3,183,526 + -0.8 3,183,526 + -0.5 3,183,527 - -0.1 3,183,527 - +1.7 3,183,556 + -0.5 3,183,556 + -1.4 3,183,556 + -1.1 3,183,557 - +0.3 3,183,557 - +1.5 3,183,557 - +0.3 3,183,557 - +0.1 3,183,557 - +0.5 3,183,707 + Psest_2992 0.32 -2.8 3,183,872 - Psest_2992 0.69 -0.2 3,183,872 - Psest_2992 0.69 +0.3 3,183,872 - Psest_2992 0.69 -0.1 3,183,874 + Psest_2992 0.70 -0.6 3,183,874 + Psest_2992 0.70 +0.3 3,183,874 + Psest_2992 0.70 -1.7 3,183,874 + Psest_2992 0.70 -1.1 3,183,874 + Psest_2992 0.70 +0.6 3,183,874 + Psest_2992 0.70 -1.0 3,183,875 - Psest_2992 0.70 -0.2 3,183,875 - Psest_2992 0.70 +0.6 3,183,875 - Psest_2992 0.70 +1.2 3,184,016 + -1.2 3,184,016 + -0.2 3,184,016 + +0.2 3,184,016 + -0.5 3,184,017 - +0.5 3,184,017 - +0.5
Or see this region's nucleotide sequence