Experiment: nitrate reduction - anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0077 and Psest_0078 are separated by 30 nucleotides Psest_0078 and Psest_0079 are separated by 94 nucleotides Psest_0079 and Psest_0080 are separated by 143 nucleotides
Psest_0077: Psest_0077 - luciferase family oxidoreductase, group 1, at 78,457 to 79,455
_0077
Psest_0078: Psest_0078 - hypothetical protein, at 79,486 to 79,899
_0078
Psest_0079: Psest_0079 - hypothetical protein, at 79,994 to 80,419
_0079
Psest_0080: Psest_0080 - Predicted aminopeptidase, at 80,563 to 81,621
_0080
Position (kb) 79
80 Strain fitness (log2 ratio) -2
-1
0
1
2 at 78.526 kb on - strand at 78.726 kb on - strand, within Psest_0077 at 78.797 kb on + strand, within Psest_0077 at 78.797 kb on + strand, within Psest_0077 at 78.797 kb on + strand, within Psest_0077 at 78.798 kb on - strand, within Psest_0077 at 78.798 kb on - strand, within Psest_0077 at 78.798 kb on - strand, within Psest_0077 at 78.798 kb on - strand, within Psest_0077 at 78.798 kb on - strand, within Psest_0077 at 78.840 kb on - strand, within Psest_0077 at 78.864 kb on - strand, within Psest_0077 at 78.864 kb on - strand, within Psest_0077 at 78.864 kb on - strand, within Psest_0077 at 78.894 kb on - strand, within Psest_0077 at 79.460 kb on + strand at 79.733 kb on + strand, within Psest_0078 at 79.734 kb on - strand, within Psest_0078 at 80.046 kb on + strand, within Psest_0079 at 80.046 kb on + strand, within Psest_0079 at 80.046 kb on + strand, within Psest_0079 at 80.046 kb on + strand, within Psest_0079 at 80.046 kb on + strand, within Psest_0079 at 80.046 kb on + strand, within Psest_0079 at 80.047 kb on - strand, within Psest_0079 at 80.047 kb on - strand, within Psest_0079 at 80.061 kb on + strand, within Psest_0079 at 80.061 kb on + strand, within Psest_0079 at 80.062 kb on - strand, within Psest_0079 at 80.062 kb on - strand, within Psest_0079 at 80.137 kb on - strand, within Psest_0079 at 80.246 kb on + strand, within Psest_0079 at 80.246 kb on + strand, within Psest_0079 at 80.512 kb on + strand at 80.512 kb on + strand at 80.512 kb on + strand at 80.513 kb on - strand at 80.513 kb on - strand at 80.650 kb on + strand at 80.650 kb on + strand at 80.650 kb on + strand at 80.650 kb on + strand at 80.651 kb on - strand at 80.651 kb on - strand at 80.653 kb on + strand at 80.653 kb on + strand at 80.654 kb on - strand at 80.654 kb on - strand at 80.654 kb on - strand at 80.765 kb on + strand, within Psest_0080 at 80.766 kb on - strand, within Psest_0080 at 80.768 kb on + strand, within Psest_0080 at 80.768 kb on + strand, within Psest_0080 at 80.768 kb on + strand, within Psest_0080 at 80.768 kb on + strand, within Psest_0080 at 80.768 kb on + strand, within Psest_0080 at 80.768 kb on + strand, within Psest_0080 at 80.768 kb on + strand, within Psest_0080 at 80.769 kb on - strand, within Psest_0080 at 80.769 kb on - strand, within Psest_0080 at 80.769 kb on - strand, within Psest_0080 at 80.769 kb on - strand, within Psest_0080 at 80.830 kb on + strand, within Psest_0080 at 80.831 kb on - strand, within Psest_0080 at 80.831 kb on - strand, within Psest_0080 at 80.852 kb on - strand, within Psest_0080 at 80.852 kb on - strand, within Psest_0080 at 80.852 kb on - strand, within Psest_0080 at 80.852 kb on - strand, within Psest_0080
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate reduction - anaerobic remove 78,526 - +0.7 78,726 - Psest_0077 0.27 +0.6 78,797 + Psest_0077 0.34 +1.0 78,797 + Psest_0077 0.34 -0.2 78,797 + Psest_0077 0.34 -0.3 78,798 - Psest_0077 0.34 -0.1 78,798 - Psest_0077 0.34 +0.5 78,798 - Psest_0077 0.34 +1.0 78,798 - Psest_0077 0.34 +0.2 78,798 - Psest_0077 0.34 -0.9 78,840 - Psest_0077 0.38 -0.0 78,864 - Psest_0077 0.41 +1.3 78,864 - Psest_0077 0.41 -0.4 78,864 - Psest_0077 0.41 +2.6 78,894 - Psest_0077 0.44 -1.9 79,460 + -0.6 79,733 + Psest_0078 0.60 -0.7 79,734 - Psest_0078 0.60 -1.0 80,046 + Psest_0079 0.12 -0.4 80,046 + Psest_0079 0.12 -0.8 80,046 + Psest_0079 0.12 -0.0 80,046 + Psest_0079 0.12 -0.3 80,046 + Psest_0079 0.12 -0.0 80,046 + Psest_0079 0.12 -1.5 80,047 - Psest_0079 0.12 +0.8 80,047 - Psest_0079 0.12 -1.8 80,061 + Psest_0079 0.16 +0.5 80,061 + Psest_0079 0.16 -0.3 80,062 - Psest_0079 0.16 -0.1 80,062 - Psest_0079 0.16 -0.6 80,137 - Psest_0079 0.34 -0.8 80,246 + Psest_0079 0.59 -2.3 80,246 + Psest_0079 0.59 -1.8 80,512 + -0.0 80,512 + -1.2 80,512 + +0.1 80,513 - -1.3 80,513 - -1.3 80,650 + +0.1 80,650 + -0.3 80,650 + +0.3 80,650 + -0.6 80,651 - +1.3 80,651 - -0.2 80,653 + +0.1 80,653 + -0.3 80,654 - -1.2 80,654 - -0.5 80,654 - -0.2 80,765 + Psest_0080 0.19 -1.2 80,766 - Psest_0080 0.19 +0.4 80,768 + Psest_0080 0.19 -0.8 80,768 + Psest_0080 0.19 -0.5 80,768 + Psest_0080 0.19 -0.4 80,768 + Psest_0080 0.19 +0.0 80,768 + Psest_0080 0.19 -0.2 80,768 + Psest_0080 0.19 +0.6 80,768 + Psest_0080 0.19 -1.0 80,769 - Psest_0080 0.19 -0.3 80,769 - Psest_0080 0.19 +0.4 80,769 - Psest_0080 0.19 +0.4 80,769 - Psest_0080 0.19 -0.3 80,830 + Psest_0080 0.25 -0.0 80,831 - Psest_0080 0.25 -0.6 80,831 - Psest_0080 0.25 -0.3 80,852 - Psest_0080 0.27 -0.2 80,852 - Psest_0080 0.27 -0.0 80,852 - Psest_0080 0.27 +0.3 80,852 - Psest_0080 0.27 -0.6
Or see this region's nucleotide sequence