Experiment: nitrate reduction - anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0049 and Psest_0050 are separated by 155 nucleotides Psest_0050 and Psest_0051 are separated by 193 nucleotides Psest_0051 and Psest_0052 are separated by 10 nucleotides Psest_0052 and Psest_0053 are separated by 167 nucleotides Psest_0053 and Psest_0054 are separated by 86 nucleotides
Psest_0049: Psest_0049 - Uncharacterized conserved protein, at 52,951 to 53,556
_0049
Psest_0050: Psest_0050 - Predicted acetyltransferase, at 53,712 to 53,993
_0050
Psest_0051: Psest_0051 - hypothetical protein, at 54,187 to 54,516
_0051
Psest_0052: Psest_0052 - hypothetical protein, at 54,527 to 55,279
_0052
Psest_0053: Psest_0053 - hypothetical protein, at 55,447 to 55,950
_0053
Psest_0054: Psest_0054 - hypothetical protein, at 56,037 to 56,429
_0054
Position (kb) 54
55
56 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 53.596 kb on - strand at 53.659 kb on + strand at 53.659 kb on + strand at 53.659 kb on + strand at 53.660 kb on - strand at 53.660 kb on - strand at 53.676 kb on + strand at 53.676 kb on + strand at 53.676 kb on + strand at 53.677 kb on - strand at 53.761 kb on - strand, within Psest_0050 at 53.946 kb on + strand, within Psest_0050 at 53.946 kb on + strand, within Psest_0050 at 53.946 kb on + strand, within Psest_0050 at 53.946 kb on + strand, within Psest_0050 at 53.946 kb on + strand, within Psest_0050 at 53.947 kb on - strand, within Psest_0050 at 53.947 kb on - strand, within Psest_0050 at 53.947 kb on - strand, within Psest_0050 at 53.947 kb on - strand, within Psest_0050 at 53.947 kb on - strand, within Psest_0050 at 53.999 kb on - strand at 54.019 kb on + strand at 54.019 kb on + strand at 54.019 kb on + strand at 54.019 kb on + strand at 54.019 kb on + strand at 54.019 kb on + strand at 54.020 kb on - strand at 54.040 kb on + strand at 54.041 kb on - strand at 54.134 kb on - strand at 54.218 kb on + strand at 54.219 kb on - strand at 54.276 kb on + strand, within Psest_0051 at 54.276 kb on + strand, within Psest_0051 at 54.277 kb on - strand, within Psest_0051 at 54.277 kb on - strand, within Psest_0051 at 54.277 kb on - strand, within Psest_0051 at 54.277 kb on - strand, within Psest_0051 at 54.433 kb on + strand, within Psest_0051 at 54.433 kb on + strand, within Psest_0051 at 54.433 kb on + strand, within Psest_0051 at 54.433 kb on + strand, within Psest_0051 at 54.434 kb on - strand, within Psest_0051 at 54.434 kb on - strand, within Psest_0051 at 54.434 kb on - strand, within Psest_0051 at 54.488 kb on + strand at 54.488 kb on + strand at 54.488 kb on + strand at 54.488 kb on + strand at 54.488 kb on + strand at 54.489 kb on - strand at 54.489 kb on - strand at 54.735 kb on + strand, within Psest_0052 at 54.736 kb on - strand, within Psest_0052 at 54.736 kb on - strand, within Psest_0052 at 54.736 kb on - strand, within Psest_0052 at 54.736 kb on - strand, within Psest_0052 at 54.736 kb on - strand, within Psest_0052 at 54.780 kb on + strand, within Psest_0052 at 54.803 kb on + strand, within Psest_0052 at 54.825 kb on + strand, within Psest_0052 at 54.825 kb on + strand, within Psest_0052 at 54.825 kb on + strand, within Psest_0052 at 54.831 kb on + strand, within Psest_0052 at 54.831 kb on + strand, within Psest_0052 at 54.831 kb on + strand, within Psest_0052 at 54.831 kb on + strand, within Psest_0052 at 54.832 kb on - strand, within Psest_0052 at 54.832 kb on - strand, within Psest_0052 at 54.832 kb on - strand, within Psest_0052 at 54.832 kb on - strand, within Psest_0052 at 54.862 kb on - strand, within Psest_0052 at 54.999 kb on + strand, within Psest_0052 at 54.999 kb on + strand, within Psest_0052 at 54.999 kb on + strand, within Psest_0052 at 54.999 kb on + strand, within Psest_0052 at 54.999 kb on + strand, within Psest_0052 at 54.999 kb on + strand, within Psest_0052 at 54.999 kb on + strand, within Psest_0052 at 54.999 kb on + strand, within Psest_0052 at 54.999 kb on + strand, within Psest_0052 at 54.999 kb on + strand, within Psest_0052 at 55.000 kb on - strand, within Psest_0052 at 55.000 kb on - strand, within Psest_0052 at 55.000 kb on - strand, within Psest_0052 at 55.000 kb on - strand, within Psest_0052 at 55.000 kb on - strand, within Psest_0052 at 55.000 kb on - strand, within Psest_0052 at 55.000 kb on - strand, within Psest_0052 at 55.000 kb on - strand, within Psest_0052 at 55.000 kb on - strand, within Psest_0052 at 55.000 kb on - strand, within Psest_0052 at 55.034 kb on + strand, within Psest_0052 at 55.065 kb on + strand, within Psest_0052 at 55.065 kb on + strand, within Psest_0052 at 55.066 kb on - strand, within Psest_0052 at 55.066 kb on - strand, within Psest_0052 at 55.168 kb on - strand, within Psest_0052 at 55.199 kb on + strand, within Psest_0052 at 55.200 kb on - strand, within Psest_0052 at 55.200 kb on - strand, within Psest_0052 at 55.264 kb on - strand at 55.306 kb on + strand at 55.313 kb on - strand at 55.313 kb on - strand at 55.421 kb on - strand at 55.424 kb on - strand at 55.424 kb on - strand at 55.424 kb on - strand at 55.834 kb on + strand, within Psest_0053 at 56.182 kb on + strand, within Psest_0054 at 56.183 kb on - strand, within Psest_0054 at 56.183 kb on - strand, within Psest_0054 at 56.200 kb on + strand, within Psest_0054 at 56.201 kb on - strand, within Psest_0054 at 56.248 kb on + strand, within Psest_0054 at 56.249 kb on - strand, within Psest_0054 at 56.249 kb on - strand, within Psest_0054
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate reduction - anaerobic remove 53,596 - +0.1 53,659 + -1.0 53,659 + -1.1 53,659 + -0.0 53,660 - -2.5 53,660 - -0.6 53,676 + -1.4 53,676 + +0.4 53,676 + -0.2 53,677 - +0.7 53,761 - Psest_0050 0.17 +0.4 53,946 + Psest_0050 0.83 +0.4 53,946 + Psest_0050 0.83 -0.6 53,946 + Psest_0050 0.83 -1.5 53,946 + Psest_0050 0.83 -0.8 53,946 + Psest_0050 0.83 +0.4 53,947 - Psest_0050 0.83 -1.2 53,947 - Psest_0050 0.83 -0.0 53,947 - Psest_0050 0.83 -1.6 53,947 - Psest_0050 0.83 +0.8 53,947 - Psest_0050 0.83 +0.4 53,999 - +0.2 54,019 + -0.8 54,019 + -0.5 54,019 + -0.8 54,019 + -1.8 54,019 + +0.1 54,019 + -1.2 54,020 - +0.2 54,040 + -0.1 54,041 - +1.0 54,134 - -1.2 54,218 + -0.6 54,219 - -0.6 54,276 + Psest_0051 0.27 -1.1 54,276 + Psest_0051 0.27 -0.0 54,277 - Psest_0051 0.27 +0.8 54,277 - Psest_0051 0.27 -0.9 54,277 - Psest_0051 0.27 -0.5 54,277 - Psest_0051 0.27 -1.2 54,433 + Psest_0051 0.75 +0.3 54,433 + Psest_0051 0.75 -2.0 54,433 + Psest_0051 0.75 -0.7 54,433 + Psest_0051 0.75 +0.4 54,434 - Psest_0051 0.75 -2.0 54,434 - Psest_0051 0.75 -0.2 54,434 - Psest_0051 0.75 -1.2 54,488 + +1.0 54,488 + -0.9 54,488 + -0.6 54,488 + +0.6 54,488 + +1.3 54,489 - -0.1 54,489 - -1.4 54,735 + Psest_0052 0.28 -0.6 54,736 - Psest_0052 0.28 -0.3 54,736 - Psest_0052 0.28 -1.4 54,736 - Psest_0052 0.28 -0.1 54,736 - Psest_0052 0.28 +1.6 54,736 - Psest_0052 0.28 +0.4 54,780 + Psest_0052 0.34 -0.2 54,803 + Psest_0052 0.37 -0.6 54,825 + Psest_0052 0.40 +1.0 54,825 + Psest_0052 0.40 -0.0 54,825 + Psest_0052 0.40 -1.3 54,831 + Psest_0052 0.40 -1.5 54,831 + Psest_0052 0.40 +0.6 54,831 + Psest_0052 0.40 -1.6 54,831 + Psest_0052 0.40 -0.3 54,832 - Psest_0052 0.41 +1.0 54,832 - Psest_0052 0.41 -0.3 54,832 - Psest_0052 0.41 -0.6 54,832 - Psest_0052 0.41 -0.3 54,862 - Psest_0052 0.44 +0.2 54,999 + Psest_0052 0.63 -0.4 54,999 + Psest_0052 0.63 +0.4 54,999 + Psest_0052 0.63 -0.7 54,999 + Psest_0052 0.63 +0.4 54,999 + Psest_0052 0.63 -0.6 54,999 + Psest_0052 0.63 +0.8 54,999 + Psest_0052 0.63 -0.9 54,999 + Psest_0052 0.63 -0.8 54,999 + Psest_0052 0.63 -0.5 54,999 + Psest_0052 0.63 -0.3 55,000 - Psest_0052 0.63 -1.4 55,000 - Psest_0052 0.63 -0.2 55,000 - Psest_0052 0.63 -0.0 55,000 - Psest_0052 0.63 -1.9 55,000 - Psest_0052 0.63 -1.3 55,000 - Psest_0052 0.63 -3.0 55,000 - Psest_0052 0.63 -0.7 55,000 - Psest_0052 0.63 -0.9 55,000 - Psest_0052 0.63 -1.3 55,000 - Psest_0052 0.63 -0.9 55,034 + Psest_0052 0.67 -0.7 55,065 + Psest_0052 0.71 -0.8 55,065 + Psest_0052 0.71 -0.9 55,066 - Psest_0052 0.72 -2.0 55,066 - Psest_0052 0.72 -1.1 55,168 - Psest_0052 0.85 -0.8 55,199 + Psest_0052 0.89 -2.6 55,200 - Psest_0052 0.89 -0.7 55,200 - Psest_0052 0.89 -1.2 55,264 - +1.0 55,306 + -0.4 55,313 - -0.8 55,313 - -0.6 55,421 - -0.5 55,424 - -0.9 55,424 - +0.1 55,424 - +0.6 55,834 + Psest_0053 0.77 -0.4 56,182 + Psest_0054 0.37 -0.0 56,183 - Psest_0054 0.37 -1.8 56,183 - Psest_0054 0.37 -0.4 56,200 + Psest_0054 0.41 -0.0 56,201 - Psest_0054 0.42 -0.0 56,248 + Psest_0054 0.54 -0.4 56,249 - Psest_0054 0.54 +0.6 56,249 - Psest_0054 0.54 -2.0
Or see this region's nucleotide sequence