Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4225

Experiment: nitrate reduction - anaerobic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrate reduction - anaerobic
4,404,987	+				-0.5
4,404,987	+				+0.0
4,404,988	-				+0.0
4,404,988	-				-0.5
4,404,989	+				-0.1
4,404,989	+				-0.1
4,405,003	+				+0.5
4,405,104	+				-0.7
4,405,105	-				+0.5
4,405,242	-		Psest_4224	0.24	-0.1
4,405,242	-		Psest_4224	0.24	+1.6
4,405,242	-		Psest_4224	0.24	+0.8
4,405,242	-		Psest_4224	0.24	+0.8
4,405,242	-		Psest_4224	0.24	+1.0
4,405,343	+		Psest_4224	0.39	-1.0
4,405,343	+		Psest_4224	0.39	-0.4
4,405,343	+		Psest_4224	0.39	+0.3
4,405,343	+		Psest_4224	0.39	-0.5
4,405,343	+		Psest_4224	0.39	+0.5
4,405,344	-		Psest_4224	0.39	-0.2
4,405,344	-		Psest_4224	0.39	+1.2
4,405,344	-		Psest_4224	0.39	-0.2
4,405,344	-		Psest_4224	0.39	+0.4
4,405,344	-		Psest_4224	0.39	+0.2
4,405,344	-		Psest_4224	0.39	+0.5
4,405,344	-		Psest_4224	0.39	+0.3
4,405,344	-		Psest_4224	0.39	+1.6
4,405,344	-		Psest_4224	0.39	-0.4
4,405,364	+		Psest_4224	0.42	-1.2
4,405,571	+		Psest_4224	0.71	+0.3
4,405,571	+		Psest_4224	0.71	+0.4
4,405,571	+		Psest_4224	0.71	+0.1
4,405,571	+		Psest_4224	0.71	-0.4
4,405,571	+		Psest_4224	0.71	-0.3
4,405,571	+		Psest_4224	0.71	-0.6
4,405,571	+		Psest_4224	0.71	-1.3
4,405,572	-		Psest_4224	0.71	-0.6
4,405,572	-		Psest_4224	0.71	+1.0
4,405,607	+		Psest_4224	0.76	+0.6
4,405,607	+		Psest_4224	0.76	-1.2
4,405,607	+		Psest_4224	0.76	+0.1
4,405,607	+		Psest_4224	0.76	-0.2
4,405,607	+		Psest_4224	0.76	-0.2
4,405,607	+		Psest_4224	0.76	+1.3
4,405,608	-		Psest_4224	0.76	-0.0
4,405,608	-		Psest_4224	0.76	-1.1
4,405,608	-		Psest_4224	0.76	+0.2
4,405,608	-		Psest_4224	0.76	-0.3
4,405,608	-		Psest_4224	0.76	+0.3
4,405,608	-		Psest_4224	0.76	-0.9
4,405,608	-		Psest_4224	0.76	-1.0
4,405,608	-		Psest_4224	0.76	+1.5
4,405,608	-		Psest_4224	0.76	-1.0
4,405,608	-		Psest_4224	0.76	-0.3
4,405,768	+				+0.2
4,405,769	-				+0.2
4,405,818	+				-0.1
4,405,820	+				-0.8
4,405,820	+				-1.1
4,405,820	+				-2.1
4,405,820	+				+0.7
4,405,820	+				+2.0
4,405,820	+				+0.9
4,405,821	-				+1.4
4,405,821	-				+1.3
4,405,821	-				+1.2
4,405,821	-				+0.8
4,405,821	-				+0.6
4,405,842	+				-0.1
4,405,842	+				-0.2
4,405,842	+				-0.4
4,405,843	-				-0.2
4,405,843	-				+0.1
4,405,843	-				-0.3
4,405,843	-				+0.3
4,405,843	-				+0.2
4,405,843	-				+0.9
4,405,843	-				-0.2
4,405,851	+				-0.9
4,405,854	+				+0.3
4,405,854	+				+0.0
4,405,855	-				-0.8
4,405,855	-				+0.5
4,405,855	-				-0.6
4,406,076	+		Psest_4225	0.11	-0.7
4,406,076	+		Psest_4225	0.11	+1.5
4,406,076	+		Psest_4225	0.11	-0.6
4,406,077	-		Psest_4225	0.11	+0.3
4,406,077	-		Psest_4225	0.11	+0.3
4,406,077	-		Psest_4225	0.11	-0.1
4,406,214	+		Psest_4225	0.18	-1.1
4,406,214	+		Psest_4225	0.18	+0.8
4,406,215	-		Psest_4225	0.18	+1.6
4,406,215	-		Psest_4225	0.18	-0.4
4,406,280	+		Psest_4225	0.21	-0.4
4,406,295	+		Psest_4225	0.21	-1.0
4,406,295	+		Psest_4225	0.21	-0.0
4,406,355	+		Psest_4225	0.24	+1.0
4,406,356	-		Psest_4225	0.24	+1.8
4,406,386	+		Psest_4225	0.26	+1.1
4,406,386	+		Psest_4225	0.26	-0.5
4,406,386	+		Psest_4225	0.26	-0.4
4,406,386	+		Psest_4225	0.26	-0.3
4,406,386	+		Psest_4225	0.26	-0.9
4,406,387	-		Psest_4225	0.26	-0.4
4,406,387	-		Psest_4225	0.26	-0.6
4,406,496	+		Psest_4225	0.31	-0.7
4,406,497	-		Psest_4225	0.31	+0.1
4,406,517	+		Psest_4225	0.32	+0.1
4,406,517	+		Psest_4225	0.32	+0.2
4,406,517	+		Psest_4225	0.32	-1.6
4,406,518	-		Psest_4225	0.32	-1.3
4,406,518	-		Psest_4225	0.32	-0.7
4,406,518	-		Psest_4225	0.32	-1.0
4,406,526	+		Psest_4225	0.32	+0.0
4,406,526	+		Psest_4225	0.32	-0.3
4,406,526	+		Psest_4225	0.32	-0.1
4,406,526	+		Psest_4225	0.32	-0.3
4,406,526	+		Psest_4225	0.32	-0.1
4,406,526	+		Psest_4225	0.32	-0.1
4,406,527	-		Psest_4225	0.32	-0.4
4,406,527	-		Psest_4225	0.32	-0.2
4,406,527	-		Psest_4225	0.32	+0.5
4,406,527	-		Psest_4225	0.32	-0.9
4,406,527	-		Psest_4225	0.32	-0.3
4,406,527	-		Psest_4225	0.32	+0.0
4,406,571	+		Psest_4225	0.34	-0.2
4,406,722	+		Psest_4225	0.41	-1.0
4,406,749	-		Psest_4225	0.42	-0.0
4,406,908	-		Psest_4225	0.50	-0.5
4,407,111	+		Psest_4225	0.59	-0.8
4,407,112	-		Psest_4225	0.59	-0.5
4,407,112	-		Psest_4225	0.59	+0.0
4,407,112	-		Psest_4225	0.59	-1.6
4,407,112	-		Psest_4225	0.59	-0.2
4,407,163	-		Psest_4225	0.62	-0.3
4,407,163	-		Psest_4225	0.62	-1.1
4,407,201	+		Psest_4225	0.63	+0.2
4,407,201	+		Psest_4225	0.63	-0.1
4,407,703	-		Psest_4225	0.87	-0.6
4,407,703	-		Psest_4225	0.87	-0.3
4,407,703	-		Psest_4225	0.87	-0.5
4,407,703	-		Psest_4225	0.87	-0.3
4,407,780	+				+0.5
4,407,780	+				+0.0
4,407,910	+				-0.3
4,407,911	-				+0.1
4,407,911	-				-0.1
4,408,031	-				+0.3
4,408,031	-				-0.8
4,408,031	-				-0.3
4,408,057	+				+1.1
4,408,057	+				+0.6
4,408,057	+				+0.6
4,408,057	+				+0.2
4,408,057	+				+0.4
4,408,057	+				+1.0
4,408,058	-				-1.6
4,408,058	-				-0.6
4,408,058	-				-0.3
4,408,058	-				-0.4
4,408,107	+				-0.8
4,408,165	-				+1.8
4,408,165	-				+1.5
4,408,270	-		Psest_4226	0.69	+1.3
4,408,701	-				+1.0
4,408,757	-				-0.8
4,408,757	-				+0.4
4,408,757	-				-1.6
4,408,757	-				-0.9
4,408,844	+				-0.3
4,408,844	+				+0.5
4,408,844	+				-1.0
4,408,844	+				+0.3
4,408,845	-				+0.3
4,408,845	-				-0.1
4,408,845	-				+0.1
4,408,845	-				-0.5
4,408,845	-				+0.2
4,408,845	-				+0.3
4,408,845	-				+0.3
4,408,845	-				-0.2
4,408,848	+				+1.5
4,408,848	+				+0.3
4,408,848	+				+1.0
4,408,848	+				-0.3
4,408,848	+				+0.0
4,408,848	+				+0.4
4,408,848	+				+0.1
4,408,848	+				+0.0
4,408,848	+				-0.5
4,408,848	+				-0.2
4,408,848	+				+0.5
4,408,848	+				+0.7
4,408,848	+				+0.3
4,408,848	+				+0.3
4,408,848	+				+0.0
4,408,848	+				+0.2
4,408,848	+				-0.5
4,408,848	+				-0.2
4,408,848	+				+0.4
4,408,848	+				-1.4
4,408,848	+				-0.7
4,408,848	+				-0.5
4,408,848	+				+0.1
4,408,848	+				-0.4
4,408,848	+				+1.0
4,408,848	+				-0.1
4,408,848	+				+0.6
4,408,848	+				+1.4
4,408,848	+				-0.3
4,408,848	+				-0.7
4,408,848	+				-0.8
4,408,848	+				+1.0
4,408,848	+				-0.5
4,408,849	-				-0.1
4,408,849	-				+0.1
4,408,849	-				-0.4
4,408,849	-				+0.4
4,408,849	-				-0.2
4,408,849	-				+1.4
4,408,849	-				+0.3
4,408,849	-				+0.3
4,408,849	-				-1.8
4,408,849	-				+0.5
4,408,849	-				+0.1
4,408,849	-				-0.3
4,408,849	-				-0.2
4,408,849	-				+0.2
4,408,849	-				-1.2
4,408,849	-				-0.1
4,408,849	-				-0.6
4,408,849	-				+0.4
4,408,849	-				-0.1
4,408,849	-				+1.0
4,408,849	-				+0.1
4,408,849	-				-0.3
4,408,849	-				+0.0
4,408,849	-				-0.3
4,408,849	-				+0.1
4,408,849	-				+0.5
4,408,849	-				+0.6
4,408,849	-				+0.5
4,408,849	-				-0.2
4,408,849	-				-0.5
4,408,849	-				+0.0
4,408,849	-				-0.1
4,408,849	-				+0.3
4,408,849	-				-0.9
4,408,849	-				+0.1
4,408,849	-				-0.7
4,408,849	-				+0.6
4,408,849	-				+0.7
4,408,849	-				+0.3
4,408,849	-				+0.6
4,408,849	-				+1.6
4,408,849	-				-0.5
4,408,849	-				-1.0
4,408,849	-				+0.6
4,408,849	-				-0.4
4,408,849	-				+0.5
4,408,849	-				-0.3
4,408,849	-				+1.3
4,408,849	-				+0.4
4,408,849	-				-0.6
4,408,849	-				-0.3
4,408,849	-				-0.6
4,408,849	-				+0.0
4,408,849	-				-0.1
4,408,849	-				+2.3
4,408,849	-				+0.3
4,408,849	-				+0.6
4,408,849	-				+1.0
4,408,849	-				+1.0
4,408,849	-				-0.7
4,408,849	-				+0.8
4,408,849	-				+0.9
4,408,849	-				-0.6
4,408,849	-				-0.6
4,408,849	-				-0.6
4,408,849	-				-0.6
4,408,849	-				+0.3
4,408,849	-				-0.2
4,408,849	-				+1.6
4,408,850	+				+0.9
4,408,850	+				+0.4
4,408,850	+				+0.5
4,408,850	+				-0.3
4,408,850	+				+0.6
4,408,850	+				+1.0
4,408,850	+				+1.0
4,408,850	+				-0.1
4,408,850	+				+0.7
4,408,850	+				+1.6
4,408,850	+				+0.4
4,408,850	+				-0.1
4,408,850	+				-0.1
4,408,850	+				+0.0
4,408,850	+				+0.3
4,408,850	+				-1.0
4,408,850	+				+0.2
4,408,850	+				+1.1
4,408,850	+				+1.6
4,408,850	+				+0.3
4,408,850	+				+1.8
4,408,850	+				+0.1
4,408,850	+				-0.4
4,408,850	+				-0.2
4,408,850	+				+0.9
4,408,850	+				+0.3
4,408,850	+				-0.2
4,408,850	+				+0.1
4,408,850	+				+0.0
4,408,850	+				-0.2
4,408,850	+				+1.4
4,408,850	+				-0.6
4,408,850	+				+1.0
4,408,850	+				-0.3
4,408,850	+				+0.1
4,408,850	+				+0.9
4,408,850	+				+0.0
4,408,850	+				-0.6
4,408,850	+				+0.6
4,408,850	+				+0.7
4,408,850	+				-0.0
4,408,850	+				-0.4
4,408,850	+				-1.6
4,408,850	+				-0.2
4,408,850	+				+0.8
4,408,850	+				-0.1
4,408,850	+				+0.3
4,408,850	+				+0.1
4,408,850	+				+0.4
4,408,850	+				-0.3
4,408,850	+				+0.9
4,408,850	+				+1.6
4,408,850	+				+0.7
4,408,850	+				+0.9
4,408,850	+				+1.2
4,408,850	+				+0.7
4,408,850	+				+0.6
4,408,850	+				+0.3
4,408,850	+				+0.3
4,408,850	+				+1.2
4,408,850	+				+0.4
4,408,850	+				-0.6
4,408,850	+				-0.9
4,408,851	-				+0.3
4,408,851	-				-0.4
4,408,851	-				-0.3
4,408,851	-				+0.7
4,408,851	-				+1.3
4,408,851	-				-0.8
4,408,851	-				-0.1
4,408,851	-				+0.6
4,408,851	-				-1.9
4,408,851	-				+1.6
4,408,851	-				-0.1
4,408,851	-				-0.3
4,408,851	-				-0.4
4,408,851	-				+0.1
4,408,851	-				-0.7
4,408,851	-				+0.7
4,408,851	-				-0.1
4,408,851	-				-0.2
4,408,851	-				+0.0
4,408,851	-				+0.8
4,408,851	-				+1.0
4,408,851	-				-0.3
4,408,851	-				+0.2
4,408,851	-				+1.4
4,408,851	-				+0.8
4,408,851	-				+0.1
4,408,851	-				-0.2
4,408,851	-				-0.1
4,408,851	-				+0.2
4,408,851	-				+0.8
4,408,851	-				+0.5
4,408,851	-				+0.2
4,408,851	-				+0.4
4,408,851	-				-0.6
4,408,851	-				-0.5
4,408,851	-				+0.5
4,408,851	-				+1.0
4,408,851	-				-0.1
4,408,851	-				-1.2
4,408,851	-				-0.7
4,408,851	-				+1.0
4,408,851	-				+2.6
4,408,851	-				-0.2
4,408,851	-				+2.3
4,408,851	-				+0.0
4,408,852	+				+0.7
4,408,852	+				+1.1
4,408,852	+				+0.5
4,408,852	+				+1.3
4,408,852	+				-0.1
4,408,852	+				+0.2
4,408,852	+				+0.6
4,408,852	+				+0.6
4,408,852	+				+0.7
4,408,852	+				+0.5
4,408,852	+				+0.3
4,408,852	+				-0.2
4,408,852	+				-0.9
4,408,852	+				+1.0
4,408,852	+				-0.2
4,408,852	+				+1.0
4,408,852	+				+2.3
4,408,852	+				+0.7
4,408,852	+				+0.0
4,408,852	+				+0.4
4,408,852	+				+0.3
4,408,852	+				+0.1
4,408,852	+				+0.5
4,408,852	+				+0.2
4,408,852	+				+0.6
4,408,852	+				-1.0
4,408,852	+				+0.8
4,408,852	+				+0.4
4,408,852	+				+1.3
4,408,852	+				+1.1
4,408,852	+				+1.3
4,408,852	+				+1.5
4,408,852	+				-0.1
4,408,852	+				+3.0
4,408,852	+				-0.1
4,408,852	+				-0.3
4,408,852	+				+2.0
4,408,852	+				+0.0
4,408,852	+				+0.8
4,408,852	+				+0.3
4,408,852	+				+0.6
4,408,852	+				+0.8
4,408,852	+				-0.7
4,408,852	+				+0.9
4,408,853	-				+0.9
4,408,853	-				+0.0
4,408,853	-				-2.0
4,408,853	-				-0.2
4,408,853	-				+0.1
4,408,853	-				-1.0
4,408,853	-				-0.6
4,408,853	-				+0.8
4,408,853	-				+0.5
4,408,853	-				+0.1
4,408,853	-				+0.1
4,408,853	-				+0.6
4,408,853	-				-0.1
4,408,853	-				+0.4
4,408,853	-				-0.1
4,408,853	-				-0.4
4,408,853	-				-0.1
4,408,853	-				+1.0
4,408,853	-				+0.6
4,408,853	-				+1.8
4,408,853	-				-0.6
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