Experiment: nitrate reduction - anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0372 and Psest_0373 are separated by 28 nucleotides Psest_0373 and Psest_0374 are separated by 450 nucleotides
Psest_0372: Psest_0372 - Uncharacterized protein conserved in bacteria, at 398,239 to 399,219
_0372
Psest_0373: Psest_0373 - L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily, at 399,248 to 400,639
_0373
Psest_0374: Psest_0374 - 5-dehydro-4-deoxyglucarate dehydratase, at 401,090 to 402,001
_0374
Position (kb) 399
400
401 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 398.327 kb on + strand at 398.328 kb on - strand at 398.330 kb on + strand at 398.369 kb on + strand, within Psest_0372 at 398.456 kb on + strand, within Psest_0372 at 398.456 kb on + strand, within Psest_0372 at 398.457 kb on - strand, within Psest_0372 at 398.573 kb on + strand, within Psest_0372 at 398.573 kb on + strand, within Psest_0372 at 398.573 kb on + strand, within Psest_0372 at 398.573 kb on + strand, within Psest_0372 at 398.573 kb on + strand, within Psest_0372 at 398.573 kb on + strand, within Psest_0372 at 398.574 kb on - strand, within Psest_0372 at 398.574 kb on - strand, within Psest_0372 at 398.574 kb on - strand, within Psest_0372 at 398.574 kb on - strand, within Psest_0372 at 398.574 kb on - strand, within Psest_0372 at 398.591 kb on + strand, within Psest_0372 at 398.591 kb on + strand, within Psest_0372 at 398.591 kb on + strand, within Psest_0372 at 398.592 kb on - strand, within Psest_0372 at 398.592 kb on - strand, within Psest_0372 at 398.741 kb on + strand, within Psest_0372 at 398.741 kb on + strand, within Psest_0372 at 398.873 kb on + strand, within Psest_0372 at 398.873 kb on + strand, within Psest_0372 at 399.004 kb on - strand, within Psest_0372 at 399.044 kb on + strand, within Psest_0372 at 399.044 kb on + strand, within Psest_0372 at 399.044 kb on + strand, within Psest_0372 at 399.045 kb on - strand, within Psest_0372 at 399.045 kb on - strand, within Psest_0372 at 399.045 kb on - strand, within Psest_0372 at 399.208 kb on + strand at 399.208 kb on + strand at 399.208 kb on + strand at 399.208 kb on + strand at 399.254 kb on - strand at 399.254 kb on - strand at 399.285 kb on + strand at 399.285 kb on + strand at 399.286 kb on - strand at 399.286 kb on - strand at 399.286 kb on - strand at 399.286 kb on - strand at 399.286 kb on - strand at 399.286 kb on - strand at 399.354 kb on + strand at 399.354 kb on + strand at 399.354 kb on + strand at 399.354 kb on + strand at 399.354 kb on + strand at 399.354 kb on + strand at 399.354 kb on + strand at 399.789 kb on + strand, within Psest_0373 at 400.099 kb on - strand, within Psest_0373 at 400.099 kb on - strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.129 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.140 kb on + strand, within Psest_0373 at 400.398 kb on + strand, within Psest_0373 at 400.473 kb on - strand, within Psest_0373 at 400.533 kb on + strand at 400.607 kb on + strand at 400.607 kb on + strand at 400.607 kb on + strand at 400.607 kb on + strand at 400.607 kb on + strand at 400.607 kb on + strand at 400.607 kb on + strand at 400.607 kb on + strand at 400.607 kb on + strand at 400.607 kb on + strand at 400.607 kb on + strand at 400.607 kb on + strand at 400.608 kb on - strand at 400.608 kb on - strand at 400.608 kb on - strand at 400.608 kb on - strand at 400.608 kb on - strand at 400.608 kb on - strand at 400.608 kb on - strand at 400.608 kb on - strand at 400.864 kb on - strand at 400.898 kb on + strand at 400.899 kb on - strand at 400.899 kb on - strand at 400.906 kb on + strand at 400.907 kb on - strand at 401.056 kb on + strand at 401.187 kb on - strand, within Psest_0374 at 401.187 kb on - strand, within Psest_0374 at 401.188 kb on + strand, within Psest_0374 at 401.188 kb on + strand, within Psest_0374 at 401.189 kb on - strand, within Psest_0374 at 401.282 kb on + strand, within Psest_0374 at 401.430 kb on - strand, within Psest_0374 at 401.430 kb on - strand, within Psest_0374 at 401.510 kb on + strand, within Psest_0374 at 401.510 kb on + strand, within Psest_0374 at 401.510 kb on + strand, within Psest_0374 at 401.511 kb on - strand, within Psest_0374 at 401.511 kb on - strand, within Psest_0374 at 401.511 kb on - strand, within Psest_0374 at 401.511 kb on - strand, within Psest_0374
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate reduction - anaerobic remove 398,327 + -0.4 398,328 - +0.1 398,330 + -0.4 398,369 + Psest_0372 0.13 +1.1 398,456 + Psest_0372 0.22 -0.4 398,456 + Psest_0372 0.22 -0.7 398,457 - Psest_0372 0.22 -0.6 398,573 + Psest_0372 0.34 +0.1 398,573 + Psest_0372 0.34 +1.1 398,573 + Psest_0372 0.34 +0.1 398,573 + Psest_0372 0.34 -0.9 398,573 + Psest_0372 0.34 -0.4 398,573 + Psest_0372 0.34 +1.1 398,574 - Psest_0372 0.34 +0.6 398,574 - Psest_0372 0.34 -0.2 398,574 - Psest_0372 0.34 -0.4 398,574 - Psest_0372 0.34 -1.4 398,574 - Psest_0372 0.34 -2.3 398,591 + Psest_0372 0.36 +0.1 398,591 + Psest_0372 0.36 -1.1 398,591 + Psest_0372 0.36 -0.1 398,592 - Psest_0372 0.36 -0.1 398,592 - Psest_0372 0.36 -0.2 398,741 + Psest_0372 0.51 +1.6 398,741 + Psest_0372 0.51 +1.1 398,873 + Psest_0372 0.65 +1.4 398,873 + Psest_0372 0.65 +0.8 399,004 - Psest_0372 0.78 +1.4 399,044 + Psest_0372 0.82 +0.7 399,044 + Psest_0372 0.82 -1.2 399,044 + Psest_0372 0.82 +0.6 399,045 - Psest_0372 0.82 +0.0 399,045 - Psest_0372 0.82 +0.6 399,045 - Psest_0372 0.82 +0.2 399,208 + -0.8 399,208 + +0.7 399,208 + +1.1 399,208 + +1.0 399,254 - -0.0 399,254 - -1.1 399,285 + -0.3 399,285 + -0.1 399,286 - -0.7 399,286 - -0.3 399,286 - -0.7 399,286 - +1.7 399,286 - -0.2 399,286 - -0.8 399,354 + -1.8 399,354 + -0.8 399,354 + +1.6 399,354 + +1.5 399,354 + +0.5 399,354 + +0.4 399,354 + -0.4 399,789 + Psest_0373 0.39 +0.2 400,099 - Psest_0373 0.61 -1.9 400,099 - Psest_0373 0.61 +0.2 400,127 + Psest_0373 0.63 +0.3 400,127 + Psest_0373 0.63 -0.6 400,127 + Psest_0373 0.63 +0.2 400,127 + Psest_0373 0.63 -1.8 400,127 + Psest_0373 0.63 +1.2 400,127 + Psest_0373 0.63 -0.1 400,127 + Psest_0373 0.63 +0.6 400,127 + Psest_0373 0.63 +0.4 400,127 + Psest_0373 0.63 +1.5 400,127 + Psest_0373 0.63 -0.8 400,127 + Psest_0373 0.63 +1.5 400,127 + Psest_0373 0.63 +0.6 400,127 + Psest_0373 0.63 +0.2 400,127 + Psest_0373 0.63 +1.9 400,127 + Psest_0373 0.63 -0.2 400,128 - Psest_0373 0.63 +0.7 400,128 - Psest_0373 0.63 -0.1 400,128 - Psest_0373 0.63 -0.4 400,128 - Psest_0373 0.63 +0.2 400,128 - Psest_0373 0.63 +0.2 400,128 - Psest_0373 0.63 +1.0 400,128 - Psest_0373 0.63 +0.0 400,128 - Psest_0373 0.63 +2.2 400,128 - Psest_0373 0.63 +2.7 400,128 - Psest_0373 0.63 +0.3 400,128 - Psest_0373 0.63 -0.1 400,128 - Psest_0373 0.63 +0.8 400,128 - Psest_0373 0.63 +0.7 400,128 - Psest_0373 0.63 +0.2 400,128 - Psest_0373 0.63 +0.4 400,128 - Psest_0373 0.63 +0.2 400,128 - Psest_0373 0.63 +0.6 400,128 - Psest_0373 0.63 +1.4 400,128 - Psest_0373 0.63 +0.6 400,128 - Psest_0373 0.63 +2.2 400,128 - Psest_0373 0.63 +0.2 400,128 - Psest_0373 0.63 -0.4 400,128 - Psest_0373 0.63 -1.2 400,128 - Psest_0373 0.63 -0.0 400,128 - Psest_0373 0.63 -0.7 400,128 - Psest_0373 0.63 -1.8 400,128 - Psest_0373 0.63 -1.0 400,128 - Psest_0373 0.63 -0.7 400,128 - Psest_0373 0.63 +1.0 400,128 - Psest_0373 0.63 -0.2 400,128 - Psest_0373 0.63 +0.8 400,128 - Psest_0373 0.63 +0.4 400,128 - Psest_0373 0.63 -0.8 400,129 + Psest_0373 0.63 -1.0 400,131 + Psest_0373 0.63 +0.8 400,131 + Psest_0373 0.63 -0.0 400,131 + Psest_0373 0.63 -0.1 400,131 + Psest_0373 0.63 +0.7 400,131 + Psest_0373 0.63 +0.2 400,131 + Psest_0373 0.63 -0.2 400,131 + Psest_0373 0.63 +0.6 400,131 + Psest_0373 0.63 -0.3 400,131 + Psest_0373 0.63 -0.0 400,131 + Psest_0373 0.63 -0.1 400,131 + Psest_0373 0.63 +1.2 400,131 + Psest_0373 0.63 +1.0 400,131 + Psest_0373 0.63 +2.7 400,131 + Psest_0373 0.63 -0.2 400,131 + Psest_0373 0.63 +2.4 400,131 + Psest_0373 0.63 +1.2 400,131 + Psest_0373 0.63 -1.2 400,131 + Psest_0373 0.63 -0.8 400,131 + Psest_0373 0.63 +0.2 400,131 + Psest_0373 0.63 -1.7 400,131 + Psest_0373 0.63 -0.1 400,131 + Psest_0373 0.63 -0.4 400,131 + Psest_0373 0.63 +0.9 400,131 + Psest_0373 0.63 -0.2 400,131 + Psest_0373 0.63 +0.9 400,131 + Psest_0373 0.63 +0.4 400,131 + Psest_0373 0.63 +1.2 400,131 + Psest_0373 0.63 +1.2 400,132 - Psest_0373 0.64 -0.1 400,132 - Psest_0373 0.64 -0.7 400,132 - Psest_0373 0.64 -2.1 400,132 - Psest_0373 0.64 +0.4 400,132 - Psest_0373 0.64 -1.0 400,132 - Psest_0373 0.64 -1.0 400,132 - Psest_0373 0.64 +1.3 400,132 - Psest_0373 0.64 -0.1 400,132 - Psest_0373 0.64 +0.0 400,132 - Psest_0373 0.64 -0.4 400,132 - Psest_0373 0.64 +2.2 400,132 - Psest_0373 0.64 +1.2 400,132 - Psest_0373 0.64 +1.2 400,132 - Psest_0373 0.64 -0.1 400,132 - Psest_0373 0.64 +0.6 400,132 - Psest_0373 0.64 +0.8 400,132 - Psest_0373 0.64 -0.4 400,132 - Psest_0373 0.64 +0.2 400,132 - Psest_0373 0.64 +0.8 400,132 - Psest_0373 0.64 +0.2 400,132 - Psest_0373 0.64 -0.8 400,132 - Psest_0373 0.64 -0.5 400,132 - Psest_0373 0.64 +0.2 400,132 - Psest_0373 0.64 +0.2 400,132 - Psest_0373 0.64 +0.2 400,132 - Psest_0373 0.64 +1.7 400,132 - Psest_0373 0.64 +0.8 400,132 - Psest_0373 0.64 -0.4 400,132 - Psest_0373 0.64 -0.2 400,132 - Psest_0373 0.64 +1.0 400,132 - Psest_0373 0.64 +0.6 400,132 - Psest_0373 0.64 +0.3 400,132 - Psest_0373 0.64 -0.3 400,140 + Psest_0373 0.64 -1.0 400,398 + Psest_0373 0.83 -1.4 400,473 - Psest_0373 0.88 +0.6 400,533 + -0.7 400,607 + +0.2 400,607 + -1.1 400,607 + -0.7 400,607 + -1.8 400,607 + -0.8 400,607 + +0.2 400,607 + -0.4 400,607 + -0.1 400,607 + -1.2 400,607 + -0.4 400,607 + -3.0 400,607 + -0.4 400,608 - -0.7 400,608 - +0.6 400,608 - +2.2 400,608 - +0.3 400,608 - -0.6 400,608 - +0.1 400,608 - -0.7 400,608 - +0.5 400,864 - -0.8 400,898 + -0.6 400,899 - +0.6 400,899 - -0.9 400,906 + +0.7 400,907 - -1.1 401,056 + -0.1 401,187 - Psest_0374 0.11 -0.4 401,187 - Psest_0374 0.11 -2.3 401,188 + Psest_0374 0.11 +0.2 401,188 + Psest_0374 0.11 -0.1 401,189 - Psest_0374 0.11 -0.3 401,282 + Psest_0374 0.21 -0.4 401,430 - Psest_0374 0.37 +0.7 401,430 - Psest_0374 0.37 +0.2 401,510 + Psest_0374 0.46 -1.4 401,510 + Psest_0374 0.46 -1.4 401,510 + Psest_0374 0.46 -1.2 401,511 - Psest_0374 0.46 -0.3 401,511 - Psest_0374 0.46 +0.4 401,511 - Psest_0374 0.46 -0.8 401,511 - Psest_0374 0.46 +2.2
Or see this region's nucleotide sequence