Experiment: RCH2 defined media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0385 and Psest_0386 are separated by 0 nucleotides Psest_0386 and Psest_0387 overlap by 11 nucleotides Psest_0387 and Psest_0388 are separated by 188 nucleotides Psest_0388 and Psest_0389 overlap by 1 nucleotides Psest_0389 and Psest_0390 are separated by 5 nucleotides
Psest_0385: Psest_0385 - Conserved secreted protein, at 414,833 to 415,336
_0385
Psest_0386: Psest_0386 - Membrane protease subunits, stomatin/prohibitin homologs, at 415,337 to 416,095
_0386
Psest_0387: Psest_0387 - Membrane-bound serine protease (ClpP class), at 416,085 to 417,464
_0387
Psest_0388: Psest_0388 - hypothetical protein, at 417,653 to 417,778
_0388
Psest_0389: Psest_0389 - hypothetical protein, at 417,778 to 417,975
_0389
Psest_0390: Psest_0390 - Short-chain dehydrogenases of various substrate specificities, at 417,981 to 418,973
_0390
Position (kb) 416
417
418 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 415.128 kb on + strand, within Psest_0385 at 415.129 kb on - strand, within Psest_0385 at 415.129 kb on - strand, within Psest_0385 at 415.328 kb on + strand at 415.328 kb on + strand at 415.328 kb on + strand at 415.328 kb on + strand at 415.328 kb on + strand at 415.328 kb on + strand at 415.329 kb on - strand at 415.329 kb on - strand at 415.329 kb on - strand at 415.329 kb on - strand at 415.329 kb on - strand at 415.329 kb on - strand at 415.329 kb on - strand at 415.329 kb on - strand at 415.329 kb on - strand at 415.329 kb on - strand at 415.329 kb on - strand at 415.329 kb on - strand at 415.443 kb on + strand, within Psest_0386 at 415.443 kb on + strand, within Psest_0386 at 415.444 kb on - strand, within Psest_0386 at 415.782 kb on + strand, within Psest_0386 at 415.830 kb on + strand, within Psest_0386 at 415.830 kb on + strand, within Psest_0386 at 415.830 kb on + strand, within Psest_0386 at 415.830 kb on + strand, within Psest_0386 at 415.830 kb on + strand, within Psest_0386 at 415.830 kb on + strand, within Psest_0386 at 415.830 kb on + strand, within Psest_0386 at 415.830 kb on + strand, within Psest_0386 at 415.830 kb on + strand, within Psest_0386 at 415.830 kb on + strand, within Psest_0386 at 415.831 kb on - strand, within Psest_0386 at 415.831 kb on - strand, within Psest_0386 at 415.831 kb on - strand, within Psest_0386 at 415.831 kb on - strand, within Psest_0386 at 415.831 kb on - strand, within Psest_0386 at 415.831 kb on - strand, within Psest_0386 at 415.831 kb on - strand, within Psest_0386 at 416.060 kb on + strand at 416.060 kb on + strand at 416.089 kb on - strand at 416.406 kb on + strand, within Psest_0387 at 416.557 kb on + strand, within Psest_0387 at 416.557 kb on + strand, within Psest_0387 at 416.558 kb on - strand, within Psest_0387 at 416.558 kb on - strand, within Psest_0387 at 416.558 kb on - strand, within Psest_0387 at 416.558 kb on - strand, within Psest_0387 at 416.585 kb on - strand, within Psest_0387 at 416.665 kb on + strand, within Psest_0387 at 416.665 kb on + strand, within Psest_0387 at 416.665 kb on + strand, within Psest_0387 at 416.665 kb on + strand, within Psest_0387 at 416.727 kb on + strand, within Psest_0387 at 416.728 kb on - strand, within Psest_0387 at 416.854 kb on + strand, within Psest_0387 at 416.968 kb on + strand, within Psest_0387 at 416.968 kb on + strand, within Psest_0387 at 416.968 kb on + strand, within Psest_0387 at 416.968 kb on + strand, within Psest_0387 at 416.969 kb on - strand, within Psest_0387 at 416.969 kb on - strand, within Psest_0387 at 416.969 kb on - strand, within Psest_0387 at 417.072 kb on - strand, within Psest_0387 at 417.145 kb on + strand, within Psest_0387 at 417.146 kb on - strand, within Psest_0387 at 417.146 kb on - strand, within Psest_0387 at 417.146 kb on - strand, within Psest_0387 at 417.154 kb on + strand, within Psest_0387 at 417.154 kb on + strand, within Psest_0387 at 417.154 kb on + strand, within Psest_0387 at 417.154 kb on + strand, within Psest_0387 at 417.154 kb on + strand, within Psest_0387 at 417.154 kb on + strand, within Psest_0387 at 417.154 kb on + strand, within Psest_0387 at 417.154 kb on + strand, within Psest_0387 at 417.154 kb on + strand, within Psest_0387 at 417.154 kb on + strand, within Psest_0387 at 417.154 kb on + strand, within Psest_0387 at 417.154 kb on + strand, within Psest_0387 at 417.154 kb on + strand, within Psest_0387 at 417.155 kb on - strand, within Psest_0387 at 417.155 kb on - strand, within Psest_0387 at 417.155 kb on - strand, within Psest_0387 at 417.155 kb on - strand, within Psest_0387 at 417.155 kb on - strand, within Psest_0387 at 417.155 kb on - strand, within Psest_0387 at 417.155 kb on - strand, within Psest_0387 at 417.155 kb on - strand, within Psest_0387 at 417.155 kb on - strand, within Psest_0387 at 417.155 kb on - strand, within Psest_0387 at 417.155 kb on - strand, within Psest_0387 at 417.155 kb on - strand, within Psest_0387 at 417.155 kb on - strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.333 kb on + strand at 417.333 kb on + strand at 417.333 kb on + strand at 417.333 kb on + strand at 417.333 kb on + strand at 417.333 kb on + strand at 417.333 kb on + strand at 417.333 kb on + strand at 417.333 kb on + strand at 417.334 kb on - strand at 417.334 kb on - strand at 417.334 kb on - strand at 417.334 kb on - strand at 417.334 kb on - strand at 417.334 kb on - strand at 417.334 kb on - strand at 417.334 kb on - strand at 417.334 kb on - strand at 417.334 kb on - strand at 417.337 kb on + strand at 417.337 kb on + strand at 417.337 kb on + strand at 417.337 kb on + strand at 417.337 kb on + strand at 417.338 kb on - strand at 417.338 kb on - strand at 417.338 kb on - strand at 417.338 kb on - strand at 417.446 kb on + strand at 417.446 kb on + strand at 417.446 kb on + strand at 417.519 kb on - strand at 417.519 kb on - strand at 417.886 kb on + strand, within Psest_0389 at 417.886 kb on + strand, within Psest_0389 at 417.886 kb on + strand, within Psest_0389 at 417.886 kb on + strand, within Psest_0389 at 417.886 kb on + strand, within Psest_0389 at 417.886 kb on + strand, within Psest_0389 at 417.887 kb on - strand, within Psest_0389 at 417.887 kb on - strand, within Psest_0389 at 417.887 kb on - strand, within Psest_0389
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2 defined media remove 415,128 + Psest_0385 0.59 +1.3 415,129 - Psest_0385 0.59 +0.4 415,129 - Psest_0385 0.59 +0.6 415,328 + +0.2 415,328 + +0.2 415,328 + +1.2 415,328 + +1.2 415,328 + -0.1 415,328 + +0.2 415,329 - -0.3 415,329 - +0.7 415,329 - +0.4 415,329 - +0.6 415,329 - -0.3 415,329 - +0.7 415,329 - -0.0 415,329 - +0.0 415,329 - +0.6 415,329 - +1.2 415,329 - +0.7 415,329 - +0.0 415,443 + Psest_0386 0.14 +0.9 415,443 + Psest_0386 0.14 +1.2 415,444 - Psest_0386 0.14 -0.6 415,782 + Psest_0386 0.59 +0.2 415,830 + Psest_0386 0.65 -0.8 415,830 + Psest_0386 0.65 -0.2 415,830 + Psest_0386 0.65 -0.6 415,830 + Psest_0386 0.65 -0.7 415,830 + Psest_0386 0.65 +0.6 415,830 + Psest_0386 0.65 +0.2 415,830 + Psest_0386 0.65 +1.2 415,830 + Psest_0386 0.65 +2.2 415,830 + Psest_0386 0.65 +1.2 415,830 + Psest_0386 0.65 +2.2 415,831 - Psest_0386 0.65 +0.1 415,831 - Psest_0386 0.65 -0.7 415,831 - Psest_0386 0.65 +0.2 415,831 - Psest_0386 0.65 -0.2 415,831 - Psest_0386 0.65 -1.0 415,831 - Psest_0386 0.65 +0.3 415,831 - Psest_0386 0.65 +0.1 416,060 + +1.0 416,060 + -0.2 416,089 - +0.2 416,406 + Psest_0387 0.23 -0.8 416,557 + Psest_0387 0.34 +1.2 416,557 + Psest_0387 0.34 -0.2 416,558 - Psest_0387 0.34 +1.0 416,558 - Psest_0387 0.34 -1.7 416,558 - Psest_0387 0.34 +2.2 416,558 - Psest_0387 0.34 -0.8 416,585 - Psest_0387 0.36 +2.7 416,665 + Psest_0387 0.42 -1.2 416,665 + Psest_0387 0.42 +0.7 416,665 + Psest_0387 0.42 +0.7 416,665 + Psest_0387 0.42 -0.7 416,727 + Psest_0387 0.47 -0.8 416,728 - Psest_0387 0.47 +1.3 416,854 + Psest_0387 0.56 +0.3 416,968 + Psest_0387 0.64 +0.2 416,968 + Psest_0387 0.64 +1.2 416,968 + Psest_0387 0.64 +0.3 416,968 + Psest_0387 0.64 +0.2 416,969 - Psest_0387 0.64 +0.6 416,969 - Psest_0387 0.64 -0.1 416,969 - Psest_0387 0.64 +1.2 417,072 - Psest_0387 0.72 +0.7 417,145 + Psest_0387 0.77 +2.2 417,146 - Psest_0387 0.77 +0.4 417,146 - Psest_0387 0.77 +0.6 417,146 - Psest_0387 0.77 +2.2 417,154 + Psest_0387 0.77 +1.7 417,154 + Psest_0387 0.77 -0.0 417,154 + Psest_0387 0.77 -0.8 417,154 + Psest_0387 0.77 +0.7 417,154 + Psest_0387 0.77 +2.0 417,154 + Psest_0387 0.77 +1.2 417,154 + Psest_0387 0.77 +0.2 417,154 + Psest_0387 0.77 +1.2 417,154 + Psest_0387 0.77 +1.2 417,154 + Psest_0387 0.77 +0.0 417,154 + Psest_0387 0.77 -1.0 417,154 + Psest_0387 0.77 +0.6 417,154 + Psest_0387 0.77 +1.2 417,155 - Psest_0387 0.78 -0.0 417,155 - Psest_0387 0.78 +3.2 417,155 - Psest_0387 0.78 +1.2 417,155 - Psest_0387 0.78 +0.6 417,155 - Psest_0387 0.78 +0.7 417,155 - Psest_0387 0.78 -0.4 417,155 - Psest_0387 0.78 +0.2 417,155 - Psest_0387 0.78 +1.7 417,155 - Psest_0387 0.78 +0.6 417,155 - Psest_0387 0.78 +1.0 417,155 - Psest_0387 0.78 -1.0 417,155 - Psest_0387 0.78 +1.4 417,155 - Psest_0387 0.78 -1.2 417,196 + Psest_0387 0.81 -0.1 417,196 + Psest_0387 0.81 +1.2 417,196 + Psest_0387 0.81 -0.4 417,196 + Psest_0387 0.81 +0.3 417,196 + Psest_0387 0.81 -0.8 417,196 + Psest_0387 0.81 +0.7 417,196 + Psest_0387 0.81 +2.2 417,196 + Psest_0387 0.81 +0.8 417,196 + Psest_0387 0.81 -0.4 417,196 + Psest_0387 0.81 +2.7 417,196 + Psest_0387 0.81 +0.2 417,196 + Psest_0387 0.81 +0.6 417,196 + Psest_0387 0.81 +1.2 417,196 + Psest_0387 0.81 +0.2 417,196 + Psest_0387 0.81 +0.3 417,196 + Psest_0387 0.81 +1.6 417,196 + Psest_0387 0.81 -0.4 417,196 + Psest_0387 0.81 +1.0 417,196 + Psest_0387 0.81 -0.4 417,196 + Psest_0387 0.81 +0.2 417,196 + Psest_0387 0.81 -0.6 417,197 - Psest_0387 0.81 +0.6 417,197 - Psest_0387 0.81 +1.2 417,197 - Psest_0387 0.81 +0.8 417,197 - Psest_0387 0.81 -0.8 417,197 - Psest_0387 0.81 -0.8 417,197 - Psest_0387 0.81 -0.2 417,197 - Psest_0387 0.81 +0.6 417,197 - Psest_0387 0.81 -0.4 417,197 - Psest_0387 0.81 -0.2 417,197 - Psest_0387 0.81 +1.2 417,197 - Psest_0387 0.81 +0.2 417,197 - Psest_0387 0.81 +1.0 417,197 - Psest_0387 0.81 +0.2 417,197 - Psest_0387 0.81 +0.2 417,197 - Psest_0387 0.81 -0.0 417,333 + -2.3 417,333 + +0.2 417,333 + -0.6 417,333 + +1.6 417,333 + +1.2 417,333 + +0.3 417,333 + +0.8 417,333 + +1.7 417,333 + +0.3 417,334 - -0.0 417,334 - -0.1 417,334 - -0.4 417,334 - +1.4 417,334 - -0.1 417,334 - -1.4 417,334 - -0.1 417,334 - +1.4 417,334 - +0.8 417,334 - -0.8 417,337 + +1.7 417,337 + +0.9 417,337 + -0.5 417,337 + +1.8 417,337 + -0.4 417,338 - -0.1 417,338 - +0.4 417,338 - -1.4 417,338 - +1.2 417,446 + +0.6 417,446 + -0.2 417,446 + +1.2 417,519 - +2.2 417,519 - +0.3 417,886 + Psest_0389 0.55 +1.2 417,886 + Psest_0389 0.55 +1.2 417,886 + Psest_0389 0.55 +0.6 417,886 + Psest_0389 0.55 +2.0 417,886 + Psest_0389 0.55 -0.2 417,886 + Psest_0389 0.55 +1.2 417,887 - Psest_0389 0.55 +0.8 417,887 - Psest_0389 0.55 +1.6 417,887 - Psest_0389 0.55 +1.2
Or see this region's nucleotide sequence