Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0281

Experiment: RCH2 defined media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0280 and Psest_0281 are separated by 128 nucleotidesPsest_0281 and Psest_0282 are separated by 276 nucleotidesPsest_0282 and Psest_0283 are separated by 9 nucleotides Psest_0280: Psest_0280 - homoserine O-acetyltransferase, at 294,643 to 295,782 _0280 Psest_0281: Psest_0281 - Dynamin family., at 295,911 to 297,872 _0281 Psest_0282: Psest_0282 - Predicted integral membrane protein, at 298,149 to 298,739 _0282 Psest_0283: Psest_0283 - pyrroline-5-carboxylate reductase, at 298,749 to 299,573 _0283 Position (kb) 295 296 297 298Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 294.932 kb on + strand, within Psest_0280at 294.933 kb on - strand, within Psest_0280at 294.933 kb on - strand, within Psest_0280at 294.933 kb on - strand, within Psest_0280at 294.933 kb on - strand, within Psest_0280at 294.933 kb on - strand, within Psest_0280at 294.933 kb on - strand, within Psest_0280at 294.937 kb on - strand, within Psest_0280at 294.937 kb on - strand, within Psest_0280at 294.937 kb on - strand, within Psest_0280at 294.983 kb on + strand, within Psest_0280at 294.984 kb on - strand, within Psest_0280at 294.984 kb on - strand, within Psest_0280at 295.019 kb on + strand, within Psest_0280at 295.019 kb on + strand, within Psest_0280at 295.019 kb on + strand, within Psest_0280at 295.019 kb on + strand, within Psest_0280at 295.020 kb on - strand, within Psest_0280at 295.082 kb on + strand, within Psest_0280at 295.083 kb on - strand, within Psest_0280at 295.083 kb on - strand, within Psest_0280at 295.419 kb on - strand, within Psest_0280at 295.512 kb on + strand, within Psest_0280at 295.512 kb on + strand, within Psest_0280at 295.512 kb on + strand, within Psest_0280at 295.513 kb on - strand, within Psest_0280at 295.513 kb on - strand, within Psest_0280at 295.513 kb on - strand, within Psest_0280at 295.516 kb on + strand, within Psest_0280at 295.516 kb on + strand, within Psest_0280at 295.516 kb on + strand, within Psest_0280at 295.516 kb on + strand, within Psest_0280at 295.516 kb on + strand, within Psest_0280at 295.516 kb on + strand, within Psest_0280at 295.516 kb on + strand, within Psest_0280at 295.516 kb on + strand, within Psest_0280at 295.516 kb on + strand, within Psest_0280at 295.516 kb on + strand, within Psest_0280at 295.516 kb on + strand, within Psest_0280at 295.517 kb on - strand, within Psest_0280at 295.517 kb on - strand, within Psest_0280at 295.517 kb on - strand, within Psest_0280at 295.517 kb on - strand, within Psest_0280at 295.517 kb on - strand, within Psest_0280at 295.560 kb on + strand, within Psest_0280at 295.658 kb on + strand, within Psest_0280at 295.658 kb on + strand, within Psest_0280at 295.658 kb on + strand, within Psest_0280at 295.658 kb on + strand, within Psest_0280at 295.658 kb on + strand, within Psest_0280at 295.659 kb on - strand, within Psest_0280at 295.659 kb on - strand, within Psest_0280at 295.659 kb on - strand, within Psest_0280at 295.659 kb on - strand, within Psest_0280at 295.659 kb on - strand, within Psest_0280at 295.659 kb on - strand, within Psest_0280at 295.659 kb on - strand, within Psest_0280at 295.668 kb on - strand, within Psest_0280at 295.668 kb on - strand, within Psest_0280at 295.826 kb on - strandat 296.399 kb on - strand, within Psest_0281at 296.757 kb on + strand, within Psest_0281at 296.757 kb on + strand, within Psest_0281at 296.757 kb on + strand, within Psest_0281at 296.758 kb on - strand, within Psest_0281at 296.758 kb on - strand, within Psest_0281at 296.758 kb on - strand, within Psest_0281at 296.758 kb on - strand, within Psest_0281at 296.758 kb on - strand, within Psest_0281at 296.758 kb on - strand, within Psest_0281at 296.758 kb on - strand, within Psest_0281at 296.758 kb on - strand, within Psest_0281at 296.797 kb on - strand, within Psest_0281at 296.802 kb on + strand, within Psest_0281at 296.802 kb on + strand, within Psest_0281at 296.802 kb on + strand, within Psest_0281at 296.803 kb on - strand, within Psest_0281at 296.898 kb on + strand, within Psest_0281at 296.899 kb on - strand, within Psest_0281at 296.952 kb on + strand, within Psest_0281at 296.953 kb on - strand, within Psest_0281at 296.953 kb on - strand, within Psest_0281at 297.441 kb on + strand, within Psest_0281at 297.442 kb on - strand, within Psest_0281at 297.550 kb on + strand, within Psest_0281at 297.550 kb on + strand, within Psest_0281at 297.550 kb on + strand, within Psest_0281at 297.551 kb on - strand, within Psest_0281at 297.551 kb on - strand, within Psest_0281at 297.551 kb on - strand, within Psest_0281at 297.551 kb on - strand, within Psest_0281at 297.551 kb on - strand, within Psest_0281at 297.551 kb on - strand, within Psest_0281at 297.637 kb on + strand, within Psest_0281at 297.637 kb on + strand, within Psest_0281at 297.637 kb on + strand, within Psest_0281at 297.638 kb on - strand, within Psest_0281at 297.638 kb on - strand, within Psest_0281at 297.638 kb on - strand, within Psest_0281at 297.724 kb on - strandat 297.724 kb on - strandat 297.841 kb on + strandat 297.841 kb on + strandat 297.841 kb on + strandat 297.908 kb on - strandat 298.073 kb on + strandat 298.073 kb on + strandat 298.073 kb on + strandat 298.073 kb on + strandat 298.074 kb on - strandat 298.074 kb on - strandat 298.074 kb on - strandat 298.074 kb on - strandat 298.074 kb on - strandat 298.074 kb on - strandat 298.074 kb on - strandat 298.074 kb on - strandat 298.077 kb on + strandat 298.077 kb on + strandat 298.077 kb on + strandat 298.078 kb on - strandat 298.078 kb on - strandat 298.078 kb on - strandat 298.078 kb on - strandat 298.155 kb on - strandat 298.630 kb on + strand, within Psest_0282

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2 defined media
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294,932 + Psest_0280 0.25 -3.0
294,933 - Psest_0280 0.25 -0.4
294,933 - Psest_0280 0.25 -1.7
294,933 - Psest_0280 0.25 +0.1
294,933 - Psest_0280 0.25 -2.4
294,933 - Psest_0280 0.25 -5.1
294,933 - Psest_0280 0.25 -1.7
294,937 - Psest_0280 0.26 -3.7
294,937 - Psest_0280 0.26 -3.1
294,937 - Psest_0280 0.26 -2.4
294,983 + Psest_0280 0.30 -2.2
294,984 - Psest_0280 0.30 -1.2
294,984 - Psest_0280 0.30 -5.6
295,019 + Psest_0280 0.33 -3.6
295,019 + Psest_0280 0.33 -2.7
295,019 + Psest_0280 0.33 -3.7
295,019 + Psest_0280 0.33 -2.4
295,020 - Psest_0280 0.33 -2.4
295,082 + Psest_0280 0.39 +0.1
295,083 - Psest_0280 0.39 -2.4
295,083 - Psest_0280 0.39 -2.2
295,419 - Psest_0280 0.68 -2.7
295,512 + Psest_0280 0.76 -3.2
295,512 + Psest_0280 0.76 -4.7
295,512 + Psest_0280 0.76 -2.3
295,513 - Psest_0280 0.76 -2.2
295,513 - Psest_0280 0.76 -1.3
295,513 - Psest_0280 0.76 -2.6
295,516 + Psest_0280 0.77 -5.1
295,516 + Psest_0280 0.77 -2.8
295,516 + Psest_0280 0.77 -1.7
295,516 + Psest_0280 0.77 -4.6
295,516 + Psest_0280 0.77 -3.1
295,516 + Psest_0280 0.77 -1.2
295,516 + Psest_0280 0.77 -3.3
295,516 + Psest_0280 0.77 -4.4
295,516 + Psest_0280 0.77 -3.9
295,516 + Psest_0280 0.77 -2.8
295,516 + Psest_0280 0.77 -2.9
295,517 - Psest_0280 0.77 -3.0
295,517 - Psest_0280 0.77 -3.9
295,517 - Psest_0280 0.77 -4.2
295,517 - Psest_0280 0.77 -1.2
295,517 - Psest_0280 0.77 -2.6
295,560 + Psest_0280 0.80 -0.9
295,658 + Psest_0280 0.89 -2.0
295,658 + Psest_0280 0.89 -0.4
295,658 + Psest_0280 0.89 -0.9
295,658 + Psest_0280 0.89 -2.8
295,658 + Psest_0280 0.89 -2.9
295,659 - Psest_0280 0.89 -2.2
295,659 - Psest_0280 0.89 -3.3
295,659 - Psest_0280 0.89 -1.4
295,659 - Psest_0280 0.89 -4.2
295,659 - Psest_0280 0.89 -3.8
295,659 - Psest_0280 0.89 -1.4
295,659 - Psest_0280 0.89 -1.2
295,668 - Psest_0280 0.90 -1.2
295,668 - Psest_0280 0.90 -3.6
295,826 - -1.1
296,399 - Psest_0281 0.25 +0.8
296,757 + Psest_0281 0.43 -0.3
296,757 + Psest_0281 0.43 +1.0
296,757 + Psest_0281 0.43 -1.1
296,758 - Psest_0281 0.43 -0.9
296,758 - Psest_0281 0.43 -0.9
296,758 - Psest_0281 0.43 +0.6
296,758 - Psest_0281 0.43 -0.2
296,758 - Psest_0281 0.43 -1.0
296,758 - Psest_0281 0.43 -0.3
296,758 - Psest_0281 0.43 -0.1
296,758 - Psest_0281 0.43 -2.2
296,797 - Psest_0281 0.45 -0.1
296,802 + Psest_0281 0.45 +0.3
296,802 + Psest_0281 0.45 -1.4
296,802 + Psest_0281 0.45 +1.1
296,803 - Psest_0281 0.45 +0.0
296,898 + Psest_0281 0.50 +0.1
296,899 - Psest_0281 0.50 -2.2
296,952 + Psest_0281 0.53 +1.1
296,953 - Psest_0281 0.53 +0.4
296,953 - Psest_0281 0.53 +0.6
297,441 + Psest_0281 0.78 +0.8
297,442 - Psest_0281 0.78 -0.1
297,550 + Psest_0281 0.84 -0.6
297,550 + Psest_0281 0.84 -0.4
297,550 + Psest_0281 0.84 -0.3
297,551 - Psest_0281 0.84 +1.4
297,551 - Psest_0281 0.84 -0.4
297,551 - Psest_0281 0.84 -1.3
297,551 - Psest_0281 0.84 -1.0
297,551 - Psest_0281 0.84 +0.4
297,551 - Psest_0281 0.84 -0.2
297,637 + Psest_0281 0.88 -0.4
297,637 + Psest_0281 0.88 +1.1
297,637 + Psest_0281 0.88 -0.1
297,638 - Psest_0281 0.88 -0.9
297,638 - Psest_0281 0.88 -1.4
297,638 - Psest_0281 0.88 -0.9
297,724 - +2.1
297,724 - -0.2
297,841 + -0.4
297,841 + +1.0
297,841 + -0.2
297,908 - +0.4
298,073 + +1.3
298,073 + +0.4
298,073 + +0.2
298,073 + +0.4
298,074 - -0.7
298,074 - -0.4
298,074 - +1.0
298,074 - -0.2
298,074 - -0.4
298,074 - +0.8
298,074 - +0.7
298,074 - -0.7
298,077 + +0.7
298,077 + -1.0
298,077 + +0.2
298,078 - -1.7
298,078 - -0.2
298,078 - +0.7
298,078 - -0.1
298,155 - -0.4
298,630 + Psest_0282 0.81 +1.1

Or see this region's nucleotide sequence