Experiment: Def Fusidic 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0095 and Psest_0096 overlap by 1 nucleotides Psest_0096 and Psest_0097 are separated by 11 nucleotides Psest_0097 and Psest_0098 are separated by 14 nucleotides Psest_0098 and Psest_0099 are separated by 62 nucleotides
Psest_0095: Psest_0095 - phosphonate C-P lyase system protein PhnH, at 95,587 to 96,195
_0095
Psest_0096: Psest_0096 - phosphonate C-P lyase system protein PhnG, at 96,195 to 96,641
_0096
Psest_0097: Psest_0097 - phosphonates metabolism transcriptional regulator PhnF, at 96,653 to 97,381
_0097
Psest_0098: Psest_0098 - phosphonate ABC transporter, permease protein PhnE, at 97,396 to 98,190
_0098
Psest_0099: Psest_0099 - phosphonate ABC transporter, periplasmic phosphonate binding protein, at 98,253 to 99,257
_0099
Position (kb) 96
97
98 Strain fitness (log2 ratio) -1
0
1
2
3 at 95.855 kb on + strand, within Psest_0095 at 95.855 kb on + strand, within Psest_0095 at 95.855 kb on + strand, within Psest_0095 at 95.855 kb on + strand, within Psest_0095 at 95.856 kb on - strand, within Psest_0095 at 95.856 kb on - strand at 96.036 kb on - strand, within Psest_0095 at 96.394 kb on + strand, within Psest_0096 at 96.535 kb on + strand, within Psest_0096 at 96.669 kb on + strand at 96.865 kb on - strand, within Psest_0097 at 97.101 kb on + strand, within Psest_0097 at 97.125 kb on + strand, within Psest_0097 at 97.349 kb on - strand at 97.567 kb on + strand, within Psest_0098 at 97.567 kb on + strand, within Psest_0098 at 97.567 kb on + strand, within Psest_0098 at 97.567 kb on + strand, within Psest_0098 at 97.567 kb on + strand, within Psest_0098 at 97.567 kb on + strand, within Psest_0098 at 97.567 kb on + strand, within Psest_0098 at 97.568 kb on - strand, within Psest_0098 at 97.568 kb on - strand, within Psest_0098 at 97.568 kb on - strand, within Psest_0098 at 97.568 kb on - strand, within Psest_0098 at 97.615 kb on + strand, within Psest_0098 at 97.615 kb on + strand, within Psest_0098 at 97.615 kb on + strand, within Psest_0098 at 97.616 kb on - strand, within Psest_0098 at 97.865 kb on + strand, within Psest_0098 at 97.866 kb on - strand, within Psest_0098 at 97.982 kb on + strand, within Psest_0098 at 97.982 kb on + strand, within Psest_0098 at 97.982 kb on + strand, within Psest_0098 at 97.983 kb on - strand, within Psest_0098 at 97.983 kb on - strand, within Psest_0098 at 97.983 kb on - strand, within Psest_0098 at 97.983 kb on - strand, within Psest_0098 at 98.172 kb on + strand at 98.172 kb on + strand at 98.172 kb on + strand at 98.172 kb on + strand at 98.173 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Fusidic 0.032 mg/ml remove 95,855 + Psest_0095 0.44 +1.9 95,855 + Psest_0095 0.44 -0.3 95,855 + Psest_0095 0.44 +0.5 95,855 + Psest_0095 0.44 +0.3 95,856 - Psest_0095 0.44 +0.3 95,856 - +1.9 96,036 - Psest_0095 0.74 +1.9 96,394 + Psest_0096 0.45 +1.9 96,535 + Psest_0096 0.76 +1.9 96,669 + +1.9 96,865 - Psest_0097 0.29 +1.9 97,101 + Psest_0097 0.61 -0.1 97,125 + Psest_0097 0.65 +0.3 97,349 - +0.5 97,567 + Psest_0098 0.22 +0.4 97,567 + Psest_0098 0.22 +0.4 97,567 + Psest_0098 0.22 +0.8 97,567 + Psest_0098 0.22 -0.3 97,567 + Psest_0098 0.22 -0.9 97,567 + Psest_0098 0.22 -0.5 97,567 + Psest_0098 0.22 -1.6 97,568 - Psest_0098 0.22 +0.3 97,568 - Psest_0098 0.22 +2.5 97,568 - Psest_0098 0.22 +0.5 97,568 - Psest_0098 0.22 -0.9 97,615 + Psest_0098 0.28 -1.1 97,615 + Psest_0098 0.28 +0.9 97,615 + Psest_0098 0.28 +1.1 97,616 - Psest_0098 0.28 +2.9 97,865 + Psest_0098 0.59 +0.4 97,866 - Psest_0098 0.59 +0.3 97,982 + Psest_0098 0.74 -0.5 97,982 + Psest_0098 0.74 +0.3 97,982 + Psest_0098 0.74 -0.1 97,983 - Psest_0098 0.74 +0.3 97,983 - Psest_0098 0.74 +0.3 97,983 - Psest_0098 0.74 -1.5 97,983 - Psest_0098 0.74 +0.1 98,172 + +1.9 98,172 + +0.3 98,172 + +0.4 98,172 + -0.6 98,173 - -0.5
Or see this region's nucleotide sequence