Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0415

Experiment: Def Fusidic 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0413 and Psest_0414 overlap by 8 nucleotidesPsest_0414 and Psest_0415 are separated by 1 nucleotidesPsest_0415 and Psest_0416 are separated by 85 nucleotidesPsest_0416 and Psest_0417 are separated by 360 nucleotides Psest_0413: Psest_0413 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 448,933 to 449,658 _0413 Psest_0414: Psest_0414 - biotin biosynthesis protein BioC, at 449,651 to 450,445 _0414 Psest_0415: Psest_0415 - dethiobiotin synthase, at 450,447 to 451,133 _0415 Psest_0416: Psest_0416 - hypothetical protein, at 451,219 to 451,467 _0416 Psest_0417: Psest_0417 - Acyl-CoA dehydrogenases, at 451,828 to 453,633 _0417 Position (kb) 450 451 452Strain fitness (log2 ratio) -3 -2 -1 0 1at 449.461 kb on + strand, within Psest_0413at 449.462 kb on - strand, within Psest_0413at 449.462 kb on - strand, within Psest_0413at 449.721 kb on - strandat 449.721 kb on - strandat 449.721 kb on - strandat 449.993 kb on + strand, within Psest_0414at 449.993 kb on + strand, within Psest_0414at 449.994 kb on - strand, within Psest_0414at 449.994 kb on - strand, within Psest_0414at 449.994 kb on - strand, within Psest_0414at 450.182 kb on + strand, within Psest_0414at 450.182 kb on + strand, within Psest_0414at 450.182 kb on + strand, within Psest_0414at 450.182 kb on + strand, within Psest_0414at 450.183 kb on - strand, within Psest_0414at 450.183 kb on - strand, within Psest_0414at 450.183 kb on - strand, within Psest_0414at 450.183 kb on - strand, within Psest_0414at 450.407 kb on + strandat 450.407 kb on + strandat 450.407 kb on + strandat 450.407 kb on + strandat 450.408 kb on - strandat 450.408 kb on - strandat 450.408 kb on - strandat 450.408 kb on - strandat 450.420 kb on - strandat 450.420 kb on - strandat 450.557 kb on - strand, within Psest_0415at 450.794 kb on - strand, within Psest_0415at 450.837 kb on + strand, within Psest_0415at 450.837 kb on + strand, within Psest_0415at 450.837 kb on + strand, within Psest_0415at 450.838 kb on - strand, within Psest_0415at 450.922 kb on + strand, within Psest_0415at 450.922 kb on + strand, within Psest_0415at 450.923 kb on - strand, within Psest_0415at 450.923 kb on - strand, within Psest_0415at 450.923 kb on - strand, within Psest_0415at 450.923 kb on - strand, within Psest_0415at 451.233 kb on + strandat 451.261 kb on + strand, within Psest_0416at 451.261 kb on + strand, within Psest_0416at 451.261 kb on + strand, within Psest_0416at 451.262 kb on - strand, within Psest_0416at 451.262 kb on - strand, within Psest_0416at 451.262 kb on - strand, within Psest_0416at 451.262 kb on - strand, within Psest_0416at 451.262 kb on - strand, within Psest_0416at 451.262 kb on - strand, within Psest_0416at 451.262 kb on - strand, within Psest_0416at 451.633 kb on - strandat 451.633 kb on - strandat 451.633 kb on - strandat 451.633 kb on - strandat 451.671 kb on + strandat 451.671 kb on + strandat 451.672 kb on - strandat 451.672 kb on - strandat 451.713 kb on + strandat 451.713 kb on + strandat 451.713 kb on + strandat 451.809 kb on + strandat 451.822 kb on + strandat 451.837 kb on + strandat 451.837 kb on + strandat 451.838 kb on - strandat 451.868 kb on + strandat 451.868 kb on + strandat 451.869 kb on - strandat 451.889 kb on - strandat 451.901 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Fusidic 0.032 mg/ml
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449,461 + Psest_0413 0.73 -0.8
449,462 - Psest_0413 0.73 -1.2
449,462 - Psest_0413 0.73 -0.5
449,721 - -1.4
449,721 - -1.5
449,721 - -0.5
449,993 + Psest_0414 0.43 -0.5
449,993 + Psest_0414 0.43 -1.4
449,994 - Psest_0414 0.43 -0.6
449,994 - Psest_0414 0.43 +0.1
449,994 - Psest_0414 0.43 -2.0
450,182 + Psest_0414 0.67 -0.3
450,182 + Psest_0414 0.67 -1.3
450,182 + Psest_0414 0.67 -2.4
450,182 + Psest_0414 0.67 -1.4
450,183 - Psest_0414 0.67 -0.5
450,183 - Psest_0414 0.67 -0.2
450,183 - Psest_0414 0.67 -0.9
450,183 - Psest_0414 0.67 -0.7
450,407 + -0.6
450,407 + -1.2
450,407 + -0.4
450,407 + -0.2
450,408 - -1.4
450,408 - +0.4
450,408 - -1.3
450,408 - +0.6
450,420 - -2.6
450,420 - -1.8
450,557 - Psest_0415 0.16 -1.1
450,794 - Psest_0415 0.51 -1.4
450,837 + Psest_0415 0.57 -0.1
450,837 + Psest_0415 0.57 -1.2
450,837 + Psest_0415 0.57 -0.9
450,838 - Psest_0415 0.57 -1.6
450,922 + Psest_0415 0.69 -0.7
450,922 + Psest_0415 0.69 -0.2
450,923 - Psest_0415 0.69 -1.2
450,923 - Psest_0415 0.69 +0.2
450,923 - Psest_0415 0.69 -0.6
450,923 - Psest_0415 0.69 -3.4
451,233 + +0.4
451,261 + Psest_0416 0.17 -0.1
451,261 + Psest_0416 0.17 +1.4
451,261 + Psest_0416 0.17 +0.3
451,262 - Psest_0416 0.17 +0.0
451,262 - Psest_0416 0.17 +0.1
451,262 - Psest_0416 0.17 -0.4
451,262 - Psest_0416 0.17 +0.6
451,262 - Psest_0416 0.17 -0.7
451,262 - Psest_0416 0.17 +0.2
451,262 - Psest_0416 0.17 -0.0
451,633 - +0.1
451,633 - -0.3
451,633 - +0.8
451,633 - -0.9
451,671 + +0.2
451,671 + -0.8
451,672 - +0.2
451,672 - -0.5
451,713 + +0.1
451,713 + +0.2
451,713 + +0.3
451,809 + -0.4
451,822 + -0.8
451,837 + -1.8
451,837 + -0.6
451,838 - -0.4
451,868 + -0.7
451,868 + +0.4
451,869 - -1.0
451,889 - -0.5
451,901 - +0.1

Or see this region's nucleotide sequence