Experiment: Def Fusidic 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3942 and Psest_3943 are separated by 50 nucleotides Psest_3943 and Psest_3944 overlap by 8 nucleotides Psest_3944 and Psest_3945 are separated by 20 nucleotides Psest_3945 and Psest_3946 are separated by 66 nucleotides Psest_3946 and Psest_3947 overlap by 4 nucleotides
Psest_3942: Psest_3942 - 2-polyprenylphenol 6-hydroxylase, at 4,113,250 to 4,114,860
_3942
Psest_3943: Psest_3943 - Phosphoribosyl-AMP cyclohydrolase, at 4,114,911 to 4,115,306
_3943
Psest_3944: Psest_3944 - phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) <small>(from data)</small>, at 4,115,299 to 4,115,631
_3944
Psest_3945: Psest_3945 - twin arginine-targeting protein translocase, TatA/E family, at 4,115,652 to 4,115,882
_3945
Psest_3946: Psest_3946 - twin arginine-targeting protein translocase TatB, at 4,115,949 to 4,116,377
_3946
Psest_3947: Psest_3947 - Twin arginine targeting (Tat) protein translocase TatC, at 4,116,374 to 4,117,177
_3947
Position (kb) 4115
4116 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4114.974 kb on + strand, within Psest_3943 at 4114.974 kb on + strand, within Psest_3943 at 4115.055 kb on + strand, within Psest_3943 at 4115.055 kb on + strand, within Psest_3943 at 4115.055 kb on + strand, within Psest_3943 at 4115.055 kb on + strand, within Psest_3943 at 4115.055 kb on + strand, within Psest_3943 at 4115.055 kb on + strand, within Psest_3943 at 4115.055 kb on + strand, within Psest_3943 at 4115.055 kb on + strand, within Psest_3943 at 4115.056 kb on - strand, within Psest_3943 at 4115.217 kb on + strand, within Psest_3943 at 4115.283 kb on + strand at 4115.283 kb on + strand at 4115.283 kb on + strand at 4115.283 kb on + strand at 4115.283 kb on + strand at 4115.283 kb on + strand at 4115.368 kb on + strand, within Psest_3944 at 4115.383 kb on + strand, within Psest_3944 at 4115.383 kb on + strand, within Psest_3944 at 4115.491 kb on + strand, within Psest_3944 at 4115.491 kb on + strand, within Psest_3944 at 4115.880 kb on + strand at 4115.880 kb on + strand at 4115.928 kb on + strand at 4115.928 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Fusidic 0.032 mg/ml remove 4,114,974 + Psest_3943 0.16 -0.5 4,114,974 + Psest_3943 0.16 -0.3 4,115,055 + Psest_3943 0.36 -0.8 4,115,055 + Psest_3943 0.36 +0.2 4,115,055 + Psest_3943 0.36 -2.1 4,115,055 + Psest_3943 0.36 -1.5 4,115,055 + Psest_3943 0.36 -0.8 4,115,055 + Psest_3943 0.36 +0.8 4,115,055 + Psest_3943 0.36 -2.1 4,115,055 + Psest_3943 0.36 +0.2 4,115,056 - Psest_3943 0.37 -1.7 4,115,217 + Psest_3943 0.77 -0.8 4,115,283 + -0.8 4,115,283 + +1.0 4,115,283 + -1.0 4,115,283 + +0.2 4,115,283 + +0.1 4,115,283 + +0.5 4,115,368 + Psest_3944 0.21 -2.2 4,115,383 + Psest_3944 0.25 +0.8 4,115,383 + Psest_3944 0.25 -2.0 4,115,491 + Psest_3944 0.58 -3.6 4,115,491 + Psest_3944 0.58 +0.8 4,115,880 + +0.8 4,115,880 + -0.0 4,115,928 + +1.8 4,115,928 + +1.8
Or see this region's nucleotide sequence