Experiment: Def Fusidic 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3909 and Psest_3910 are separated by 152 nucleotides Psest_3910 and Psest_3911 are separated by 63 nucleotides
Psest_3909: Psest_3909 - Glucose/sorbosone dehydrogenases, at 4,077,771 to 4,079,039
_3909
Psest_3910: Psest_3910 - Uncharacterized protein conserved in bacteria, at 4,079,192 to 4,079,650
_3910
Psest_3911: Psest_3911 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 4,079,714 to 4,081,102
_3911
Position (kb)
4079
4080 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4078.297 kb on + strand, within Psest_3909 at 4078.297 kb on + strand, within Psest_3909 at 4078.297 kb on + strand, within Psest_3909 at 4078.298 kb on - strand, within Psest_3909 at 4078.298 kb on - strand, within Psest_3909 at 4078.298 kb on - strand, within Psest_3909 at 4078.334 kb on - strand, within Psest_3909 at 4078.396 kb on + strand, within Psest_3909 at 4078.498 kb on + strand, within Psest_3909 at 4078.498 kb on + strand, within Psest_3909 at 4078.498 kb on + strand, within Psest_3909 at 4078.498 kb on + strand, within Psest_3909 at 4078.498 kb on + strand, within Psest_3909 at 4078.498 kb on + strand, within Psest_3909 at 4078.498 kb on + strand, within Psest_3909 at 4078.499 kb on - strand, within Psest_3909 at 4078.570 kb on + strand, within Psest_3909 at 4078.571 kb on - strand, within Psest_3909 at 4078.571 kb on - strand, within Psest_3909 at 4078.816 kb on + strand, within Psest_3909 at 4079.164 kb on + strand at 4079.165 kb on - strand at 4079.165 kb on - strand at 4079.367 kb on - strand, within Psest_3910 at 4079.367 kb on - strand, within Psest_3910 at 4079.455 kb on - strand, within Psest_3910 at 4079.617 kb on - strand at 4079.745 kb on + strand at 4079.826 kb on + strand at 4079.826 kb on + strand at 4079.826 kb on + strand at 4079.827 kb on - strand at 4079.873 kb on - strand, within Psest_3911 at 4079.923 kb on - strand, within Psest_3911 at 4080.263 kb on + strand, within Psest_3911 at 4080.263 kb on + strand, within Psest_3911 at 4080.263 kb on + strand, within Psest_3911 at 4080.263 kb on + strand, within Psest_3911 at 4080.263 kb on + strand, within Psest_3911 at 4080.264 kb on - strand, within Psest_3911 at 4080.264 kb on - strand, within Psest_3911 at 4080.264 kb on - strand, within Psest_3911 at 4080.264 kb on - strand, within Psest_3911 at 4080.264 kb on - strand, within Psest_3911 at 4080.434 kb on - strand, within Psest_3911 at 4080.434 kb on - strand, within Psest_3911
Per-strain Table
Position Strand Gene LocusTag Fraction Def Fusidic 0.032 mg/ml remove 4,078,297 + Psest_3909 0.41 -0.8 4,078,297 + Psest_3909 0.41 +0.8 4,078,297 + Psest_3909 0.41 -0.6 4,078,298 - Psest_3909 0.42 -1.0 4,078,298 - Psest_3909 0.42 -0.2 4,078,298 - Psest_3909 0.42 +1.8 4,078,334 - Psest_3909 0.44 +0.6 4,078,396 + Psest_3909 0.49 +0.5 4,078,498 + Psest_3909 0.57 -0.8 4,078,498 + Psest_3909 0.57 +1.8 4,078,498 + Psest_3909 0.57 -0.4 4,078,498 + Psest_3909 0.57 +0.5 4,078,498 + Psest_3909 0.57 +0.1 4,078,498 + Psest_3909 0.57 +2.8 4,078,498 + Psest_3909 0.57 +0.8 4,078,499 - Psest_3909 0.57 -0.0 4,078,570 + Psest_3909 0.63 +0.1 4,078,571 - Psest_3909 0.63 -1.6 4,078,571 - Psest_3909 0.63 -1.0 4,078,816 + Psest_3909 0.82 -0.6 4,079,164 + -1.2 4,079,165 - -1.4 4,079,165 - +0.3 4,079,367 - Psest_3910 0.38 -0.4 4,079,367 - Psest_3910 0.38 -1.0 4,079,455 - Psest_3910 0.57 -2.1 4,079,617 - -1.1 4,079,745 + +0.8 4,079,826 + -0.2 4,079,826 + +1.8 4,079,826 + +1.1 4,079,827 - -0.0 4,079,873 - Psest_3911 0.11 +0.5 4,079,923 - Psest_3911 0.15 -0.4 4,080,263 + Psest_3911 0.40 -0.9 4,080,263 + Psest_3911 0.40 -0.3 4,080,263 + Psest_3911 0.40 -1.0 4,080,263 + Psest_3911 0.40 +1.0 4,080,263 + Psest_3911 0.40 -1.2 4,080,264 - Psest_3911 0.40 -0.5 4,080,264 - Psest_3911 0.40 +1.8 4,080,264 - Psest_3911 0.40 +0.7 4,080,264 - Psest_3911 0.40 +0.6 4,080,264 - Psest_3911 0.40 +1.1 4,080,434 - Psest_3911 0.52 +0.4 4,080,434 - Psest_3911 0.52 -1.4
Or see this region's nucleotide sequence