Experiment: Def Fusidic 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3296 and Psest_3297 are separated by 94 nucleotides Psest_3297 and Psest_3298 are separated by 111 nucleotides
Psest_3296: Psest_3296 - Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain, at 3,462,983 to 3,464,140
_3296
Psest_3297: Psest_3297 - histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) , at 3,464,235 to 3,465,281
_3297
Psest_3298: Psest_3298 - histidinol dehydrogenase, at 3,465,393 to 3,466,703
_3298
Position (kb)
3464
3465
3466 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1
2 at 3463.340 kb on + strand, within Psest_3296 at 3463.363 kb on - strand, within Psest_3296 at 3463.516 kb on - strand, within Psest_3296 at 3463.625 kb on + strand, within Psest_3296 at 3463.625 kb on + strand, within Psest_3296 at 3463.625 kb on + strand, within Psest_3296 at 3463.625 kb on + strand, within Psest_3296 at 3463.625 kb on + strand, within Psest_3296 at 3463.626 kb on - strand, within Psest_3296 at 3463.626 kb on - strand, within Psest_3296 at 3463.626 kb on - strand, within Psest_3296 at 3463.626 kb on - strand, within Psest_3296 at 3463.626 kb on - strand, within Psest_3296 at 3463.626 kb on - strand, within Psest_3296 at 3463.626 kb on - strand, within Psest_3296 at 3463.626 kb on - strand, within Psest_3296 at 3464.139 kb on - strand at 3464.276 kb on + strand at 3464.276 kb on + strand at 3464.288 kb on + strand at 3464.289 kb on - strand at 3464.500 kb on + strand, within Psest_3297 at 3464.570 kb on + strand, within Psest_3297 at 3464.571 kb on - strand, within Psest_3297 at 3464.571 kb on - strand, within Psest_3297 at 3464.676 kb on + strand, within Psest_3297 at 3464.676 kb on + strand, within Psest_3297 at 3464.676 kb on + strand, within Psest_3297 at 3464.677 kb on - strand, within Psest_3297 at 3464.731 kb on + strand, within Psest_3297 at 3464.731 kb on + strand, within Psest_3297 at 3464.731 kb on + strand, within Psest_3297 at 3464.731 kb on + strand, within Psest_3297 at 3464.731 kb on + strand, within Psest_3297 at 3464.731 kb on + strand, within Psest_3297 at 3464.731 kb on + strand, within Psest_3297 at 3464.732 kb on - strand, within Psest_3297 at 3464.732 kb on - strand, within Psest_3297 at 3464.860 kb on + strand, within Psest_3297 at 3464.861 kb on - strand, within Psest_3297 at 3464.861 kb on - strand, within Psest_3297 at 3464.909 kb on - strand, within Psest_3297 at 3464.950 kb on + strand, within Psest_3297 at 3464.951 kb on - strand, within Psest_3297 at 3465.042 kb on + strand, within Psest_3297 at 3465.042 kb on + strand, within Psest_3297 at 3465.042 kb on + strand, within Psest_3297 at 3465.042 kb on + strand, within Psest_3297 at 3465.042 kb on + strand, within Psest_3297 at 3465.042 kb on + strand, within Psest_3297 at 3465.064 kb on + strand, within Psest_3297 at 3465.065 kb on - strand, within Psest_3297 at 3465.065 kb on - strand, within Psest_3297 at 3465.068 kb on - strand, within Psest_3297 at 3465.068 kb on - strand, within Psest_3297 at 3465.112 kb on + strand, within Psest_3297 at 3465.176 kb on - strand, within Psest_3297 at 3465.238 kb on + strand at 3465.326 kb on + strand at 3465.327 kb on - strand at 3465.391 kb on + strand at 3465.391 kb on + strand at 3465.533 kb on - strand, within Psest_3298 at 3465.533 kb on - strand, within Psest_3298 at 3465.533 kb on - strand, within Psest_3298 at 3465.579 kb on + strand, within Psest_3298 at 3465.579 kb on + strand, within Psest_3298 at 3465.580 kb on - strand, within Psest_3298 at 3465.580 kb on - strand, within Psest_3298 at 3465.602 kb on - strand, within Psest_3298 at 3465.626 kb on - strand, within Psest_3298 at 3465.783 kb on - strand, within Psest_3298 at 3465.783 kb on - strand, within Psest_3298 at 3465.788 kb on + strand, within Psest_3298 at 3465.788 kb on + strand, within Psest_3298 at 3465.788 kb on + strand, within Psest_3298 at 3465.788 kb on + strand, within Psest_3298 at 3465.789 kb on - strand, within Psest_3298 at 3465.998 kb on + strand, within Psest_3298 at 3466.039 kb on + strand, within Psest_3298 at 3466.039 kb on + strand, within Psest_3298 at 3466.039 kb on + strand, within Psest_3298 at 3466.039 kb on + strand, within Psest_3298 at 3466.039 kb on + strand, within Psest_3298 at 3466.039 kb on + strand, within Psest_3298 at 3466.039 kb on + strand, within Psest_3298 at 3466.040 kb on - strand, within Psest_3298 at 3466.040 kb on - strand, within Psest_3298 at 3466.040 kb on - strand, within Psest_3298 at 3466.040 kb on - strand, within Psest_3298 at 3466.040 kb on - strand, within Psest_3298 at 3466.274 kb on - strand, within Psest_3298
Per-strain Table
Position Strand Gene LocusTag Fraction Def Fusidic 0.032 mg/ml remove 3,463,340 + Psest_3296 0.31 +1.1 3,463,363 - Psest_3296 0.33 +0.5 3,463,516 - Psest_3296 0.46 -0.6 3,463,625 + Psest_3296 0.55 +1.9 3,463,625 + Psest_3296 0.55 +0.2 3,463,625 + Psest_3296 0.55 +1.0 3,463,625 + Psest_3296 0.55 +0.8 3,463,625 + Psest_3296 0.55 +0.8 3,463,626 - Psest_3296 0.56 -1.3 3,463,626 - Psest_3296 0.56 -0.7 3,463,626 - Psest_3296 0.56 +0.9 3,463,626 - Psest_3296 0.56 +1.8 3,463,626 - Psest_3296 0.56 +0.7 3,463,626 - Psest_3296 0.56 -0.1 3,463,626 - Psest_3296 0.56 -0.2 3,463,626 - Psest_3296 0.56 -0.1 3,464,139 - -1.2 3,464,276 + -1.1 3,464,276 + -2.0 3,464,288 + -3.2 3,464,289 - -1.2 3,464,500 + Psest_3297 0.25 -2.3 3,464,570 + Psest_3297 0.32 -1.7 3,464,571 - Psest_3297 0.32 -0.7 3,464,571 - Psest_3297 0.32 -2.0 3,464,676 + Psest_3297 0.42 -2.1 3,464,676 + Psest_3297 0.42 -2.2 3,464,676 + Psest_3297 0.42 -1.1 3,464,677 - Psest_3297 0.42 -1.3 3,464,731 + Psest_3297 0.47 -3.1 3,464,731 + Psest_3297 0.47 -1.1 3,464,731 + Psest_3297 0.47 -2.3 3,464,731 + Psest_3297 0.47 -1.3 3,464,731 + Psest_3297 0.47 -2.7 3,464,731 + Psest_3297 0.47 -0.1 3,464,731 + Psest_3297 0.47 -2.0 3,464,732 - Psest_3297 0.47 -2.4 3,464,732 - Psest_3297 0.47 -1.8 3,464,860 + Psest_3297 0.60 -2.3 3,464,861 - Psest_3297 0.60 -1.7 3,464,861 - Psest_3297 0.60 -1.3 3,464,909 - Psest_3297 0.64 -0.3 3,464,950 + Psest_3297 0.68 -2.0 3,464,951 - Psest_3297 0.68 -2.6 3,465,042 + Psest_3297 0.77 -1.1 3,465,042 + Psest_3297 0.77 +0.3 3,465,042 + Psest_3297 0.77 -1.4 3,465,042 + Psest_3297 0.77 -1.3 3,465,042 + Psest_3297 0.77 -1.5 3,465,042 + Psest_3297 0.77 -2.0 3,465,064 + Psest_3297 0.79 +0.8 3,465,065 - Psest_3297 0.79 -1.4 3,465,065 - Psest_3297 0.79 -2.1 3,465,068 - Psest_3297 0.80 -2.7 3,465,068 - Psest_3297 0.80 -0.7 3,465,112 + Psest_3297 0.84 -1.7 3,465,176 - Psest_3297 0.90 -0.7 3,465,238 + -0.9 3,465,326 + -0.4 3,465,327 - +0.6 3,465,391 + +0.1 3,465,391 + -0.9 3,465,533 - Psest_3298 0.11 -3.0 3,465,533 - Psest_3298 0.11 -6.1 3,465,533 - Psest_3298 0.11 -1.5 3,465,579 + Psest_3298 0.14 -2.2 3,465,579 + Psest_3298 0.14 -1.3 3,465,580 - Psest_3298 0.14 -2.0 3,465,580 - Psest_3298 0.14 -1.8 3,465,602 - Psest_3298 0.16 -0.5 3,465,626 - Psest_3298 0.18 -3.3 3,465,783 - Psest_3298 0.30 -0.8 3,465,783 - Psest_3298 0.30 -2.2 3,465,788 + Psest_3298 0.30 -4.0 3,465,788 + Psest_3298 0.30 -3.0 3,465,788 + Psest_3298 0.30 -3.9 3,465,788 + Psest_3298 0.30 -3.6 3,465,789 - Psest_3298 0.30 -1.7 3,465,998 + Psest_3298 0.46 -3.0 3,466,039 + Psest_3298 0.49 -4.6 3,466,039 + Psest_3298 0.49 -4.2 3,466,039 + Psest_3298 0.49 -2.2 3,466,039 + Psest_3298 0.49 -2.4 3,466,039 + Psest_3298 0.49 -1.5 3,466,039 + Psest_3298 0.49 -3.4 3,466,039 + Psest_3298 0.49 -4.1 3,466,040 - Psest_3298 0.49 -1.3 3,466,040 - Psest_3298 0.49 -1.5 3,466,040 - Psest_3298 0.49 -3.1 3,466,040 - Psest_3298 0.49 -2.0 3,466,040 - Psest_3298 0.49 -1.7 3,466,274 - Psest_3298 0.67 -1.2
Or see this region's nucleotide sequence