Experiment: Def Fusidic 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0310 and Psest_0311 overlap by 4 nucleotides Psest_0311 and Psest_0312 are separated by 93 nucleotides
Psest_0310: Psest_0310 - The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family, at 329,497 to 332,634
_0310
Psest_0311: Psest_0311 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 332,631 to 334,055
_0311
Psest_0312: Psest_0312 - Superfamily II DNA and RNA helicases, at 334,149 to 335,966
_0312
Position (kb) 332
333
334
335 Strain fitness (log2 ratio) -2
-1
0
1
2 at 331.858 kb on + strand, within Psest_0310 at 332.164 kb on + strand, within Psest_0310 at 332.564 kb on - strand at 332.577 kb on + strand at 332.577 kb on + strand at 332.577 kb on + strand at 332.577 kb on + strand at 332.748 kb on + strand at 333.015 kb on + strand, within Psest_0311 at 333.016 kb on - strand, within Psest_0311 at 333.097 kb on - strand, within Psest_0311 at 333.222 kb on + strand, within Psest_0311 at 333.223 kb on - strand, within Psest_0311 at 333.337 kb on - strand, within Psest_0311 at 333.472 kb on + strand, within Psest_0311 at 333.473 kb on - strand, within Psest_0311 at 333.473 kb on - strand, within Psest_0311 at 333.804 kb on + strand, within Psest_0311 at 333.805 kb on - strand, within Psest_0311 at 333.805 kb on - strand, within Psest_0311 at 333.856 kb on - strand, within Psest_0311 at 333.858 kb on + strand, within Psest_0311 at 333.858 kb on + strand, within Psest_0311 at 333.858 kb on + strand, within Psest_0311 at 333.858 kb on + strand, within Psest_0311 at 333.859 kb on - strand, within Psest_0311 at 333.859 kb on - strand, within Psest_0311 at 333.859 kb on - strand, within Psest_0311 at 333.859 kb on - strand, within Psest_0311 at 333.859 kb on - strand, within Psest_0311 at 333.859 kb on - strand, within Psest_0311 at 333.859 kb on - strand, within Psest_0311 at 333.896 kb on + strand, within Psest_0311 at 333.901 kb on - strand, within Psest_0311 at 333.901 kb on - strand, within Psest_0311 at 334.206 kb on + strand at 334.206 kb on + strand at 334.540 kb on + strand at 334.540 kb on + strand, within Psest_0312 at 334.969 kb on + strand, within Psest_0312 at 334.969 kb on + strand, within Psest_0312 at 334.969 kb on + strand, within Psest_0312 at 334.969 kb on + strand, within Psest_0312 at 334.969 kb on + strand, within Psest_0312 at 334.969 kb on + strand, within Psest_0312 at 334.969 kb on + strand, within Psest_0312 at 334.969 kb on + strand, within Psest_0312 at 334.969 kb on + strand, within Psest_0312 at 334.969 kb on + strand, within Psest_0312 at 334.969 kb on + strand, within Psest_0312 at 334.969 kb on + strand, within Psest_0312 at 334.970 kb on - strand, within Psest_0312 at 334.970 kb on - strand, within Psest_0312 at 334.970 kb on - strand, within Psest_0312 at 334.970 kb on - strand, within Psest_0312 at 334.970 kb on - strand, within Psest_0312
Per-strain Table
Position Strand Gene LocusTag Fraction Def Fusidic 0.032 mg/ml remove 331,858 + Psest_0310 0.75 -0.5 332,164 + Psest_0310 0.85 -1.3 332,564 - -0.7 332,577 + -0.1 332,577 + +0.5 332,577 + -1.0 332,577 + +1.6 332,748 + -1.0 333,015 + Psest_0311 0.27 +0.8 333,016 - Psest_0311 0.27 -1.7 333,097 - Psest_0311 0.33 -1.3 333,222 + Psest_0311 0.41 +0.3 333,223 - Psest_0311 0.42 -1.2 333,337 - Psest_0311 0.50 +0.3 333,472 + Psest_0311 0.59 +0.8 333,473 - Psest_0311 0.59 -0.5 333,473 - Psest_0311 0.59 +0.8 333,804 + Psest_0311 0.82 +0.8 333,805 - Psest_0311 0.82 +1.8 333,805 - Psest_0311 0.82 -1.2 333,856 - Psest_0311 0.86 -1.3 333,858 + Psest_0311 0.86 +0.3 333,858 + Psest_0311 0.86 -0.5 333,858 + Psest_0311 0.86 -0.5 333,858 + Psest_0311 0.86 -0.5 333,859 - Psest_0311 0.86 +0.8 333,859 - Psest_0311 0.86 -1.2 333,859 - Psest_0311 0.86 -0.5 333,859 - Psest_0311 0.86 -1.7 333,859 - Psest_0311 0.86 -1.7 333,859 - Psest_0311 0.86 -0.2 333,859 - Psest_0311 0.86 -0.5 333,896 + Psest_0311 0.89 -0.5 333,901 - Psest_0311 0.89 +0.8 333,901 - Psest_0311 0.89 -1.9 334,206 + +0.3 334,206 + +1.4 334,540 + +0.3 334,540 + Psest_0312 0.22 +0.4 334,969 + Psest_0312 0.45 -0.1 334,969 + Psest_0312 0.45 +0.0 334,969 + Psest_0312 0.45 +0.3 334,969 + Psest_0312 0.45 +0.6 334,969 + Psest_0312 0.45 -0.0 334,969 + Psest_0312 0.45 +1.4 334,969 + Psest_0312 0.45 -1.1 334,969 + Psest_0312 0.45 +0.3 334,969 + Psest_0312 0.45 +0.3 334,969 + Psest_0312 0.45 -0.4 334,969 + Psest_0312 0.45 +1.3 334,969 + Psest_0312 0.45 +0.7 334,970 - Psest_0312 0.45 +1.8 334,970 - Psest_0312 0.45 +0.5 334,970 - Psest_0312 0.45 +0.5 334,970 - Psest_0312 0.45 +0.8 334,970 - Psest_0312 0.45 +1.8
Or see this region's nucleotide sequence