Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0860

Experiment: Def 5-Hydroxymethylfurfural 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0859 and Psest_0860 are separated by 387 nucleotidesPsest_0860 and Psest_0861 are separated by 160 nucleotides Psest_0859: Psest_0859 - Maltoporin (phage lambda and maltose receptor), at 929,925 to 931,217 _0859 Psest_0860: Psest_0860 - Glycosidases, at 931,605 to 933,251 _0860 Psest_0861: Psest_0861 - hypothetical protein, at 933,412 to 934,527 _0861 Position (kb) 931 932 933 934Strain fitness (log2 ratio) -2 -1 0 1 2at 930.730 kb on + strand, within Psest_0859at 930.731 kb on - strand, within Psest_0859at 930.731 kb on - strand, within Psest_0859at 930.733 kb on + strand, within Psest_0859at 930.733 kb on + strand, within Psest_0859at 930.733 kb on + strand, within Psest_0859at 930.733 kb on + strand, within Psest_0859at 930.733 kb on + strand, within Psest_0859at 930.733 kb on + strand, within Psest_0859at 930.733 kb on + strand, within Psest_0859at 930.733 kb on + strand, within Psest_0859at 930.733 kb on + strand, within Psest_0859at 930.733 kb on + strand, within Psest_0859at 930.733 kb on + strand, within Psest_0859at 930.734 kb on - strand, within Psest_0859at 930.734 kb on - strand, within Psest_0859at 930.734 kb on - strand, within Psest_0859at 930.766 kb on + strand, within Psest_0859at 930.766 kb on + strand, within Psest_0859at 930.766 kb on + strand, within Psest_0859at 930.766 kb on + strand, within Psest_0859at 930.766 kb on + strand, within Psest_0859at 930.766 kb on + strand, within Psest_0859at 930.766 kb on + strand, within Psest_0859at 930.767 kb on - strand, within Psest_0859at 930.767 kb on - strand, within Psest_0859at 930.767 kb on - strand, within Psest_0859at 930.767 kb on - strand, within Psest_0859at 930.767 kb on - strand, within Psest_0859at 930.767 kb on - strand, within Psest_0859at 930.767 kb on - strand, within Psest_0859at 930.767 kb on - strand, within Psest_0859at 930.938 kb on - strand, within Psest_0859at 930.958 kb on + strand, within Psest_0859at 930.959 kb on - strand, within Psest_0859at 931.012 kb on + strand, within Psest_0859at 931.012 kb on + strand, within Psest_0859at 931.013 kb on - strand, within Psest_0859at 931.039 kb on + strand, within Psest_0859at 931.040 kb on - strand, within Psest_0859at 931.242 kb on - strandat 931.323 kb on + strandat 931.369 kb on - strandat 931.382 kb on - strandat 931.455 kb on + strandat 931.598 kb on + strandat 931.599 kb on - strandat 931.773 kb on + strand, within Psest_0860at 931.774 kb on - strand, within Psest_0860at 931.774 kb on - strand, within Psest_0860at 931.899 kb on + strand, within Psest_0860at 931.899 kb on + strand, within Psest_0860at 931.899 kb on + strand, within Psest_0860at 931.900 kb on - strand, within Psest_0860at 931.900 kb on - strand, within Psest_0860at 931.932 kb on + strand, within Psest_0860at 931.998 kb on + strand, within Psest_0860at 931.999 kb on - strand, within Psest_0860at 932.178 kb on + strand, within Psest_0860at 932.622 kb on + strand, within Psest_0860at 932.622 kb on + strand, within Psest_0860at 932.623 kb on - strand, within Psest_0860at 932.628 kb on + strand, within Psest_0860at 932.629 kb on - strand, within Psest_0860at 932.629 kb on - strand, within Psest_0860at 932.629 kb on - strand, within Psest_0860at 932.629 kb on - strand, within Psest_0860at 932.662 kb on - strand, within Psest_0860at 932.662 kb on - strand, within Psest_0860at 932.662 kb on - strand, within Psest_0860at 932.676 kb on + strand, within Psest_0860at 932.676 kb on + strand, within Psest_0860at 932.676 kb on + strand, within Psest_0860at 932.676 kb on + strand, within Psest_0860at 932.676 kb on + strand, within Psest_0860at 932.676 kb on + strand, within Psest_0860at 932.676 kb on + strand, within Psest_0860at 932.676 kb on + strand, within Psest_0860at 932.676 kb on + strand, within Psest_0860at 932.676 kb on + strand, within Psest_0860at 932.677 kb on - strand, within Psest_0860at 932.677 kb on - strand, within Psest_0860at 932.677 kb on - strand, within Psest_0860at 932.677 kb on - strand, within Psest_0860at 932.677 kb on - strand, within Psest_0860at 932.677 kb on - strand, within Psest_0860at 932.677 kb on - strand, within Psest_0860at 932.677 kb on - strand, within Psest_0860at 933.263 kb on - strandat 933.414 kb on - strandat 933.451 kb on + strandat 933.451 kb on + strandat 933.452 kb on - strandat 933.564 kb on + strand, within Psest_0861at 933.669 kb on - strand, within Psest_0861at 933.785 kb on + strand, within Psest_0861at 933.785 kb on + strand, within Psest_0861at 933.844 kb on + strand, within Psest_0861at 933.939 kb on - strand, within Psest_0861at 934.008 kb on + strand, within Psest_0861at 934.009 kb on - strand, within Psest_0861at 934.160 kb on + strand, within Psest_0861

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Per-strain Table

Position Strand Gene LocusTag Fraction Def 5-Hydroxymethylfurfural 5 mM
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930,730 + Psest_0859 0.62 -0.7
930,731 - Psest_0859 0.62 +2.7
930,731 - Psest_0859 0.62 +0.1
930,733 + Psest_0859 0.62 -0.0
930,733 + Psest_0859 0.62 +1.1
930,733 + Psest_0859 0.62 +0.3
930,733 + Psest_0859 0.62 +2.1
930,733 + Psest_0859 0.62 -0.9
930,733 + Psest_0859 0.62 +0.9
930,733 + Psest_0859 0.62 +0.1
930,733 + Psest_0859 0.62 -0.2
930,733 + Psest_0859 0.62 -0.5
930,733 + Psest_0859 0.62 -0.9
930,733 + Psest_0859 0.62 +0.7
930,734 - Psest_0859 0.63 +1.1
930,734 - Psest_0859 0.63 +0.1
930,734 - Psest_0859 0.63 -0.3
930,766 + Psest_0859 0.65 +0.7
930,766 + Psest_0859 0.65 +1.4
930,766 + Psest_0859 0.65 +1.7
930,766 + Psest_0859 0.65 -0.9
930,766 + Psest_0859 0.65 +0.1
930,766 + Psest_0859 0.65 -1.3
930,766 + Psest_0859 0.65 +0.5
930,767 - Psest_0859 0.65 -0.5
930,767 - Psest_0859 0.65 +0.3
930,767 - Psest_0859 0.65 -0.9
930,767 - Psest_0859 0.65 +0.7
930,767 - Psest_0859 0.65 -0.5
930,767 - Psest_0859 0.65 +1.1
930,767 - Psest_0859 0.65 -0.3
930,767 - Psest_0859 0.65 +0.1
930,938 - Psest_0859 0.78 +0.1
930,958 + Psest_0859 0.80 -0.7
930,959 - Psest_0859 0.80 -0.2
931,012 + Psest_0859 0.84 +0.1
931,012 + Psest_0859 0.84 +0.1
931,013 - Psest_0859 0.84 +2.1
931,039 + Psest_0859 0.86 +0.3
931,040 - Psest_0859 0.86 -0.1
931,242 - -1.3
931,323 + -0.3
931,369 - +1.3
931,382 - +0.1
931,455 + -0.9
931,598 + +0.6
931,599 - +1.1
931,773 + Psest_0860 0.10 +0.1
931,774 - Psest_0860 0.10 -0.4
931,774 - Psest_0860 0.10 -1.7
931,899 + Psest_0860 0.18 -0.3
931,899 + Psest_0860 0.18 -0.9
931,899 + Psest_0860 0.18 -0.3
931,900 - Psest_0860 0.18 -0.2
931,900 - Psest_0860 0.18 -0.3
931,932 + Psest_0860 0.20 -0.8
931,998 + Psest_0860 0.24 -0.9
931,999 - Psest_0860 0.24 +0.4
932,178 + Psest_0860 0.35 -0.3
932,622 + Psest_0860 0.62 -0.6
932,622 + Psest_0860 0.62 -2.0
932,623 - Psest_0860 0.62 -0.1
932,628 + Psest_0860 0.62 -0.9
932,629 - Psest_0860 0.62 -0.3
932,629 - Psest_0860 0.62 -0.5
932,629 - Psest_0860 0.62 -2.3
932,629 - Psest_0860 0.62 +1.1
932,662 - Psest_0860 0.64 +0.5
932,662 - Psest_0860 0.64 -0.9
932,662 - Psest_0860 0.64 +0.1
932,676 + Psest_0860 0.65 -0.9
932,676 + Psest_0860 0.65 -0.5
932,676 + Psest_0860 0.65 -1.1
932,676 + Psest_0860 0.65 +0.3
932,676 + Psest_0860 0.65 +0.1
932,676 + Psest_0860 0.65 -0.1
932,676 + Psest_0860 0.65 -0.2
932,676 + Psest_0860 0.65 -0.5
932,676 + Psest_0860 0.65 +0.1
932,676 + Psest_0860 0.65 -0.5
932,677 - Psest_0860 0.65 +0.3
932,677 - Psest_0860 0.65 -1.4
932,677 - Psest_0860 0.65 -0.3
932,677 - Psest_0860 0.65 +1.5
932,677 - Psest_0860 0.65 +0.5
932,677 - Psest_0860 0.65 -0.1
932,677 - Psest_0860 0.65 +0.8
932,677 - Psest_0860 0.65 +1.1
933,263 - +0.8
933,414 - +0.1
933,451 + -0.0
933,451 + +0.1
933,452 - +0.4
933,564 + Psest_0861 0.14 +1.1
933,669 - Psest_0861 0.23 -1.5
933,785 + Psest_0861 0.33 -0.9
933,785 + Psest_0861 0.33 +0.1
933,844 + Psest_0861 0.39 +0.1
933,939 - Psest_0861 0.47 +0.1
934,008 + Psest_0861 0.53 +0.2
934,009 - Psest_0861 0.53 +0.5
934,160 + Psest_0861 0.67 +0.4

Or see this region's nucleotide sequence