Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0831

Experiment: Def 5-Hydroxymethylfurfural 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_0829 and Psest_0830 are separated by 67 nucleotidesPsest_0830 and Psest_0831 are separated by 136 nucleotidesPsest_0831 and Psest_0832 overlap by 4 nucleotidesPsest_0832 and Psest_0833 are separated by 145 nucleotides Psest_0829: Psest_0829 - hypothetical protein, at 901,813 to 902,004 _0829 Psest_0830: Psest_0830 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 902,072 to 902,755 _0830 Psest_0831: Psest_0831 - hypothetical protein, at 902,892 to 903,410 _0831 Psest_0832: Psest_0832 - iron-sulfur cluster repair di-iron protein, at 903,407 to 904,126 _0832 Psest_0833: Psest_0833 - Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains, at 904,272 to 905,801 _0833 Position (kb) 902 903 904Strain fitness (log2 ratio) -2 -1 0 1 2at 902.131 kb on + strandat 902.132 kb on - strandat 902.273 kb on + strand, within Psest_0830at 902.273 kb on + strand, within Psest_0830at 902.273 kb on + strand, within Psest_0830at 902.273 kb on + strand, within Psest_0830at 902.274 kb on - strand, within Psest_0830at 902.278 kb on - strand, within Psest_0830at 902.409 kb on + strand, within Psest_0830at 902.409 kb on + strand, within Psest_0830at 902.409 kb on + strand, within Psest_0830at 902.409 kb on + strand, within Psest_0830at 902.410 kb on - strand, within Psest_0830at 902.410 kb on - strand, within Psest_0830at 902.410 kb on - strand, within Psest_0830at 902.430 kb on + strand, within Psest_0830at 902.431 kb on - strand, within Psest_0830at 902.469 kb on + strand, within Psest_0830at 902.469 kb on + strand, within Psest_0830at 902.469 kb on + strand, within Psest_0830at 902.469 kb on + strand, within Psest_0830at 902.469 kb on + strand, within Psest_0830at 902.470 kb on - strand, within Psest_0830at 902.470 kb on - strand, within Psest_0830at 902.470 kb on - strand, within Psest_0830at 902.470 kb on - strand, within Psest_0830at 902.470 kb on - strand, within Psest_0830at 902.566 kb on - strand, within Psest_0830at 902.595 kb on + strand, within Psest_0830at 902.595 kb on + strand, within Psest_0830at 902.595 kb on + strand, within Psest_0830at 902.595 kb on + strand, within Psest_0830at 902.595 kb on + strand, within Psest_0830at 902.596 kb on - strand, within Psest_0830at 902.596 kb on - strand, within Psest_0830at 902.596 kb on - strand, within Psest_0830at 902.596 kb on - strand, within Psest_0830at 902.596 kb on - strand, within Psest_0830at 902.739 kb on - strandat 902.809 kb on - strandat 902.878 kb on - strandat 903.098 kb on - strand, within Psest_0831at 903.400 kb on + strandat 903.400 kb on + strandat 903.400 kb on + strandat 903.485 kb on + strand, within Psest_0832at 903.485 kb on + strand, within Psest_0832at 903.485 kb on + strand, within Psest_0832at 903.485 kb on + strand, within Psest_0832at 903.485 kb on + strand, within Psest_0832at 903.485 kb on + strand, within Psest_0832at 903.486 kb on - strand, within Psest_0832at 903.486 kb on - strand, within Psest_0832at 903.486 kb on - strand, within Psest_0832at 903.486 kb on - strand, within Psest_0832at 903.486 kb on - strand, within Psest_0832at 903.486 kb on - strand, within Psest_0832at 903.486 kb on - strand, within Psest_0832at 903.486 kb on - strand, within Psest_0832at 903.486 kb on - strand, within Psest_0832at 903.486 kb on - strand, within Psest_0832at 903.486 kb on - strand, within Psest_0832at 903.486 kb on - strand, within Psest_0832at 903.486 kb on - strand, within Psest_0832at 903.486 kb on - strand, within Psest_0832at 903.562 kb on + strand, within Psest_0832at 903.562 kb on + strand, within Psest_0832at 903.562 kb on + strand, within Psest_0832at 903.586 kb on + strand, within Psest_0832at 903.645 kb on + strand, within Psest_0832at 903.888 kb on + strand, within Psest_0832at 904.017 kb on - strand, within Psest_0832at 904.017 kb on - strand, within Psest_0832at 904.017 kb on - strand, within Psest_0832at 904.058 kb on + strandat 904.059 kb on - strandat 904.059 kb on - strandat 904.168 kb on - strandat 904.239 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Def 5-Hydroxymethylfurfural 5 mM
remove
902,131 + +0.1
902,132 - -0.5
902,273 + Psest_0830 0.29 +0.5
902,273 + Psest_0830 0.29 -0.5
902,273 + Psest_0830 0.29 -2.3
902,273 + Psest_0830 0.29 -1.0
902,274 - Psest_0830 0.30 +0.4
902,278 - Psest_0830 0.30 +0.0
902,409 + Psest_0830 0.49 -0.7
902,409 + Psest_0830 0.49 -0.7
902,409 + Psest_0830 0.49 -0.1
902,409 + Psest_0830 0.49 -0.6
902,410 - Psest_0830 0.49 +1.1
902,410 - Psest_0830 0.49 +0.8
902,410 - Psest_0830 0.49 +0.1
902,430 + Psest_0830 0.52 +0.1
902,431 - Psest_0830 0.52 -0.9
902,469 + Psest_0830 0.58 +0.6
902,469 + Psest_0830 0.58 -0.6
902,469 + Psest_0830 0.58 +0.1
902,469 + Psest_0830 0.58 +0.1
902,469 + Psest_0830 0.58 -0.4
902,470 - Psest_0830 0.58 +0.3
902,470 - Psest_0830 0.58 -1.2
902,470 - Psest_0830 0.58 -0.2
902,470 - Psest_0830 0.58 -1.8
902,470 - Psest_0830 0.58 -0.1
902,566 - Psest_0830 0.72 +0.3
902,595 + Psest_0830 0.76 -0.9
902,595 + Psest_0830 0.76 +1.7
902,595 + Psest_0830 0.76 -0.5
902,595 + Psest_0830 0.76 -1.1
902,595 + Psest_0830 0.76 +0.2
902,596 - Psest_0830 0.77 +0.7
902,596 - Psest_0830 0.77 -0.9
902,596 - Psest_0830 0.77 -0.5
902,596 - Psest_0830 0.77 -0.8
902,596 - Psest_0830 0.77 -1.3
902,739 - +0.1
902,809 - -0.5
902,878 - +0.7
903,098 - Psest_0831 0.40 -1.4
903,400 + +1.1
903,400 + -1.0
903,400 + -1.9
903,485 + Psest_0832 0.11 -1.7
903,485 + Psest_0832 0.11 -1.7
903,485 + Psest_0832 0.11 -0.1
903,485 + Psest_0832 0.11 -0.5
903,485 + Psest_0832 0.11 +0.7
903,485 + Psest_0832 0.11 -0.3
903,486 - Psest_0832 0.11 +0.1
903,486 - Psest_0832 0.11 +2.1
903,486 - Psest_0832 0.11 +1.9
903,486 - Psest_0832 0.11 +1.9
903,486 - Psest_0832 0.11 +0.3
903,486 - Psest_0832 0.11 -1.7
903,486 - Psest_0832 0.11 +0.1
903,486 - Psest_0832 0.11 -1.8
903,486 - Psest_0832 0.11 -0.6
903,486 - Psest_0832 0.11 -1.9
903,486 - Psest_0832 0.11 -0.7
903,486 - Psest_0832 0.11 +0.6
903,486 - Psest_0832 0.11 -0.9
903,486 - Psest_0832 0.11 -1.2
903,562 + Psest_0832 0.22 -0.8
903,562 + Psest_0832 0.22 +0.1
903,562 + Psest_0832 0.22 -0.3
903,586 + Psest_0832 0.25 +0.1
903,645 + Psest_0832 0.33 -0.0
903,888 + Psest_0832 0.67 -0.2
904,017 - Psest_0832 0.85 -0.1
904,017 - Psest_0832 0.85 +0.3
904,017 - Psest_0832 0.85 -1.6
904,058 + +1.5
904,059 - -0.7
904,059 - +0.7
904,168 - -1.0
904,239 - -0.4

Or see this region's nucleotide sequence