Experiment: Def 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0743 and Psest_0744 are separated by 360 nucleotides Psest_0744 and Psest_0745 are separated by 212 nucleotides Psest_0745 and Psest_0746 are separated by 49 nucleotides
Psest_0743: Psest_0743 - adenosine deaminase, at 815,727 to 816,776
_0743
Psest_0744: Psest_0744 - Uncharacterized conserved protein, at 817,137 to 817,724
_0744
Psest_0745: Psest_0745 - Domain of Unknown Function (DUF326)., at 817,937 to 818,266
_0745
Psest_0746: Psest_0746 - Protein of unknown function (DUF1826)., at 818,316 to 818,960
_0746
Position (kb) 817
818 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 816.455 kb on - strand, within Psest_0743 at 816.455 kb on - strand, within Psest_0743 at 816.455 kb on - strand, within Psest_0743 at 816.474 kb on + strand, within Psest_0743 at 816.475 kb on - strand, within Psest_0743 at 816.493 kb on + strand, within Psest_0743 at 816.494 kb on - strand, within Psest_0743 at 816.494 kb on - strand, within Psest_0743 at 816.496 kb on + strand, within Psest_0743 at 816.496 kb on + strand, within Psest_0743 at 816.736 kb on + strand at 816.736 kb on + strand at 816.737 kb on - strand at 816.763 kb on + strand at 816.763 kb on + strand at 816.784 kb on + strand at 816.784 kb on + strand at 816.784 kb on + strand at 816.784 kb on + strand at 816.785 kb on - strand at 816.785 kb on - strand at 816.785 kb on - strand at 816.785 kb on - strand at 816.882 kb on + strand at 816.883 kb on - strand at 817.086 kb on + strand at 817.086 kb on + strand at 817.086 kb on + strand at 817.087 kb on - strand at 817.116 kb on + strand at 817.117 kb on - strand at 817.117 kb on - strand at 817.117 kb on - strand at 817.138 kb on + strand at 817.138 kb on + strand at 817.139 kb on - strand at 817.139 kb on - strand at 817.175 kb on + strand at 817.584 kb on - strand, within Psest_0744 at 817.750 kb on + strand at 817.767 kb on - strand at 817.851 kb on - strand at 817.854 kb on + strand at 817.854 kb on + strand at 817.854 kb on + strand at 817.854 kb on + strand at 817.854 kb on + strand at 817.854 kb on + strand at 817.854 kb on + strand at 817.854 kb on + strand at 817.854 kb on + strand at 817.854 kb on + strand at 817.854 kb on + strand at 817.854 kb on + strand at 817.855 kb on - strand at 817.855 kb on - strand at 817.855 kb on - strand at 817.855 kb on - strand at 817.855 kb on - strand at 817.855 kb on - strand at 817.855 kb on - strand at 817.855 kb on - strand at 817.855 kb on - strand at 817.855 kb on - strand at 817.855 kb on - strand at 817.855 kb on - strand at 817.857 kb on + strand at 817.952 kb on + strand at 817.953 kb on - strand at 817.953 kb on - strand at 818.551 kb on + strand, within Psest_0746 at 818.551 kb on + strand, within Psest_0746 at 818.552 kb on - strand, within Psest_0746 at 818.552 kb on - strand, within Psest_0746 at 818.552 kb on - strand, within Psest_0746 at 818.568 kb on + strand, within Psest_0746 at 818.583 kb on + strand, within Psest_0746 at 818.583 kb on + strand, within Psest_0746 at 818.583 kb on + strand, within Psest_0746 at 818.583 kb on + strand, within Psest_0746 at 818.583 kb on + strand, within Psest_0746 at 818.583 kb on + strand, within Psest_0746 at 818.584 kb on - strand, within Psest_0746 at 818.584 kb on - strand, within Psest_0746 at 818.584 kb on - strand, within Psest_0746 at 818.584 kb on - strand, within Psest_0746 at 818.584 kb on - strand, within Psest_0746 at 818.584 kb on - strand, within Psest_0746 at 818.584 kb on - strand, within Psest_0746
Per-strain Table
Position Strand Gene LocusTag Fraction Def 5-Hydroxymethylfurfural 5 mM remove 816,455 - Psest_0743 0.69 +1.1 816,455 - Psest_0743 0.69 -0.3 816,455 - Psest_0743 0.69 -0.1 816,474 + Psest_0743 0.71 -0.2 816,475 - Psest_0743 0.71 -0.5 816,493 + Psest_0743 0.73 +0.1 816,494 - Psest_0743 0.73 -0.5 816,494 - Psest_0743 0.73 -0.4 816,496 + Psest_0743 0.73 -0.3 816,496 + Psest_0743 0.73 -0.2 816,736 + -0.1 816,736 + -1.6 816,737 - -0.2 816,763 + -1.9 816,763 + -1.5 816,784 + -2.8 816,784 + +1.9 816,784 + +1.4 816,784 + -0.9 816,785 - -0.5 816,785 - +0.1 816,785 - -0.7 816,785 - +0.1 816,882 + -0.8 816,883 - +0.1 817,086 + -1.7 817,086 + +0.1 817,086 + +0.7 817,087 - -0.6 817,116 + +1.1 817,117 - +0.1 817,117 - -1.5 817,117 - +0.5 817,138 + -1.5 817,138 + +0.8 817,139 - -0.5 817,139 - -0.6 817,175 + -0.9 817,584 - Psest_0744 0.76 -0.7 817,750 + +0.5 817,767 - +0.4 817,851 - -1.2 817,854 + +0.4 817,854 + -0.7 817,854 + +0.5 817,854 + +1.1 817,854 + -0.7 817,854 + +1.1 817,854 + +0.9 817,854 + +1.8 817,854 + +1.7 817,854 + -0.9 817,854 + -0.7 817,854 + -0.6 817,855 - -1.3 817,855 - -0.5 817,855 - -1.5 817,855 - -0.9 817,855 - -0.1 817,855 - +0.9 817,855 - +0.8 817,855 - -2.5 817,855 - +0.1 817,855 - -0.1 817,855 - -0.9 817,855 - +1.3 817,857 + +0.5 817,952 + -0.6 817,953 - -0.5 817,953 - -1.0 818,551 + Psest_0746 0.36 +1.1 818,551 + Psest_0746 0.36 -0.3 818,552 - Psest_0746 0.37 -1.1 818,552 - Psest_0746 0.37 -1.2 818,552 - Psest_0746 0.37 +0.2 818,568 + Psest_0746 0.39 -1.1 818,583 + Psest_0746 0.41 +0.4 818,583 + Psest_0746 0.41 -1.2 818,583 + Psest_0746 0.41 +0.4 818,583 + Psest_0746 0.41 +0.7 818,583 + Psest_0746 0.41 +0.1 818,583 + Psest_0746 0.41 +0.3 818,584 - Psest_0746 0.42 -1.1 818,584 - Psest_0746 0.42 +0.6 818,584 - Psest_0746 0.42 +0.9 818,584 - Psest_0746 0.42 +0.1 818,584 - Psest_0746 0.42 -2.2 818,584 - Psest_0746 0.42 +1.1 818,584 - Psest_0746 0.42 -0.2
Or see this region's nucleotide sequence