Experiment: Def 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0686 and Psest_0687 are separated by 283 nucleotides Psest_0687 and Psest_0688 are separated by 89 nucleotides
Psest_0686: Psest_0686 - Membrane protease subunits, stomatin/prohibitin homologs, at 749,591 to 750,457
_0686
Psest_0687: Psest_0687 - ATP phosphoribosyltransferase, regulatory subunit, at 750,741 to 751,928
_0687
Psest_0688: Psest_0688 - adenylosuccinate synthase, at 752,018 to 753,313
_0688
Position (kb) 750
751
752 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 750.455 kb on + strand at 750.593 kb on + strand at 750.657 kb on + strand at 750.657 kb on + strand at 750.657 kb on + strand at 750.824 kb on + strand at 750.824 kb on + strand at 750.824 kb on + strand at 750.824 kb on + strand at 750.935 kb on + strand, within Psest_0687 at 751.022 kb on + strand, within Psest_0687 at 751.022 kb on + strand, within Psest_0687 at 751.022 kb on + strand, within Psest_0687 at 751.022 kb on + strand, within Psest_0687 at 751.022 kb on + strand, within Psest_0687 at 751.022 kb on + strand, within Psest_0687 at 751.373 kb on + strand, within Psest_0687 at 751.373 kb on + strand, within Psest_0687 at 751.373 kb on + strand, within Psest_0687 at 751.373 kb on + strand, within Psest_0687 at 751.373 kb on + strand, within Psest_0687 at 751.374 kb on - strand, within Psest_0687 at 751.374 kb on - strand, within Psest_0687 at 751.374 kb on - strand, within Psest_0687 at 751.374 kb on - strand, within Psest_0687 at 751.374 kb on - strand, within Psest_0687 at 751.374 kb on - strand, within Psest_0687 at 751.374 kb on - strand, within Psest_0687 at 751.374 kb on - strand, within Psest_0687 at 751.378 kb on + strand, within Psest_0687 at 751.378 kb on + strand, within Psest_0687 at 751.378 kb on + strand, within Psest_0687 at 751.378 kb on + strand, within Psest_0687 at 751.378 kb on + strand, within Psest_0687 at 751.378 kb on + strand, within Psest_0687 at 751.378 kb on + strand, within Psest_0687 at 751.530 kb on + strand, within Psest_0687 at 751.530 kb on + strand, within Psest_0687 at 751.530 kb on + strand, within Psest_0687 at 751.557 kb on + strand, within Psest_0687 at 751.568 kb on + strand, within Psest_0687 at 751.568 kb on + strand, within Psest_0687 at 751.588 kb on + strand, within Psest_0687 at 751.588 kb on + strand, within Psest_0687 at 751.632 kb on + strand, within Psest_0687 at 751.892 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def 5-Hydroxymethylfurfural 5 mM remove 750,455 + +1.5 750,593 + -1.4 750,657 + -1.4 750,657 + +0.9 750,657 + +0.2 750,824 + -0.9 750,824 + -5.6 750,824 + -2.3 750,824 + -1.4 750,935 + Psest_0687 0.16 -1.4 751,022 + Psest_0687 0.24 +0.1 751,022 + Psest_0687 0.24 +0.3 751,022 + Psest_0687 0.24 -0.9 751,022 + Psest_0687 0.24 -0.4 751,022 + Psest_0687 0.24 -2.9 751,022 + Psest_0687 0.24 -3.5 751,373 + Psest_0687 0.53 -3.1 751,373 + Psest_0687 0.53 -2.0 751,373 + Psest_0687 0.53 -3.4 751,373 + Psest_0687 0.53 -1.7 751,373 + Psest_0687 0.53 -2.7 751,374 - Psest_0687 0.53 -1.4 751,374 - Psest_0687 0.53 +0.1 751,374 - Psest_0687 0.53 -1.2 751,374 - Psest_0687 0.53 -1.9 751,374 - Psest_0687 0.53 -4.1 751,374 - Psest_0687 0.53 +0.1 751,374 - Psest_0687 0.53 -2.0 751,374 - Psest_0687 0.53 -1.7 751,378 + Psest_0687 0.54 -0.2 751,378 + Psest_0687 0.54 -2.0 751,378 + Psest_0687 0.54 -3.5 751,378 + Psest_0687 0.54 -4.3 751,378 + Psest_0687 0.54 -1.4 751,378 + Psest_0687 0.54 -1.2 751,378 + Psest_0687 0.54 -2.2 751,530 + Psest_0687 0.66 -3.2 751,530 + Psest_0687 0.66 -2.4 751,530 + Psest_0687 0.66 -1.7 751,557 + Psest_0687 0.69 -1.4 751,568 + Psest_0687 0.70 -0.7 751,568 + Psest_0687 0.70 +0.1 751,588 + Psest_0687 0.71 -5.2 751,588 + Psest_0687 0.71 -1.7 751,632 + Psest_0687 0.75 -1.2 751,892 + -3.0
Or see this region's nucleotide sequence