Experiment: Def 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0496 and Psest_0497 are separated by 9 nucleotides Psest_0497 and Psest_0498 are separated by 9 nucleotides Psest_0498 and Psest_0499 are separated by 123 nucleotides Psest_0499 and Psest_0500 are separated by 28 nucleotides
Psest_0496: Psest_0496 - flagellar motor stator protein MotA, at 551,076 to 551,927
_0496
Psest_0497: Psest_0497 - Flagellar motor protein, at 551,937 to 552,917
_0497
Psest_0498: Psest_0498 - ribosome small subunit-dependent GTPase A, at 552,927 to 553,958
_0498
Psest_0499: Psest_0499 - hypothetical protein, at 554,082 to 554,888
_0499
Psest_0500: Psest_0500 - Oligoribonuclease (3'->5' exoribonuclease), at 554,917 to 555,459
_0500
Position (kb) 552
553
554 Strain fitness (log2 ratio) -2
-1
0
1 at 552.101 kb on + strand, within Psest_0497 at 552.101 kb on + strand, within Psest_0497 at 552.102 kb on - strand, within Psest_0497 at 552.112 kb on - strand, within Psest_0497 at 552.459 kb on + strand, within Psest_0497 at 552.459 kb on + strand, within Psest_0497 at 552.460 kb on - strand, within Psest_0497 at 552.460 kb on - strand, within Psest_0497 at 552.460 kb on - strand, within Psest_0497 at 552.460 kb on - strand, within Psest_0497 at 552.491 kb on + strand, within Psest_0497 at 552.492 kb on - strand, within Psest_0497 at 552.722 kb on + strand, within Psest_0497 at 552.826 kb on + strand at 552.838 kb on + strand at 552.931 kb on + strand at 552.932 kb on - strand at 552.932 kb on - strand at 552.977 kb on + strand at 552.977 kb on + strand at 552.977 kb on + strand at 552.977 kb on + strand at 552.977 kb on + strand at 552.978 kb on - strand at 552.978 kb on - strand at 552.978 kb on - strand at 553.209 kb on - strand, within Psest_0498 at 553.396 kb on + strand, within Psest_0498 at 553.411 kb on + strand, within Psest_0498 at 553.963 kb on + strand at 553.963 kb on + strand at 553.964 kb on - strand at 553.964 kb on - strand at 553.993 kb on + strand at 553.993 kb on + strand at 553.993 kb on + strand at 553.993 kb on + strand at 553.993 kb on + strand at 553.994 kb on - strand at 554.046 kb on + strand at 554.046 kb on + strand at 554.047 kb on - strand at 554.047 kb on - strand at 554.047 kb on - strand at 554.099 kb on + strand at 554.137 kb on + strand at 554.415 kb on + strand, within Psest_0499 at 554.415 kb on + strand, within Psest_0499 at 554.415 kb on + strand, within Psest_0499 at 554.416 kb on - strand, within Psest_0499 at 554.416 kb on - strand, within Psest_0499 at 554.416 kb on - strand, within Psest_0499 at 554.668 kb on - strand, within Psest_0499 at 554.668 kb on - strand, within Psest_0499 at 554.680 kb on - strand, within Psest_0499 at 554.680 kb on - strand, within Psest_0499 at 554.680 kb on - strand, within Psest_0499
Per-strain Table
Position Strand Gene LocusTag Fraction Def 5-Hydroxymethylfurfural 5 mM remove 552,101 + Psest_0497 0.17 +0.3 552,101 + Psest_0497 0.17 +0.2 552,102 - Psest_0497 0.17 +0.3 552,112 - Psest_0497 0.18 +0.9 552,459 + Psest_0497 0.53 +1.0 552,459 + Psest_0497 0.53 +0.3 552,460 - Psest_0497 0.53 -1.5 552,460 - Psest_0497 0.53 -0.3 552,460 - Psest_0497 0.53 +0.1 552,460 - Psest_0497 0.53 +0.6 552,491 + Psest_0497 0.56 +1.0 552,492 - Psest_0497 0.57 -0.3 552,722 + Psest_0497 0.80 -0.4 552,826 + -1.4 552,838 + -0.5 552,931 + -0.1 552,932 - +0.4 552,932 - +0.5 552,977 + +0.5 552,977 + -0.4 552,977 + -1.0 552,977 + -1.1 552,977 + -1.6 552,978 - -2.0 552,978 - -0.9 552,978 - -0.4 553,209 - Psest_0498 0.27 +1.2 553,396 + Psest_0498 0.45 -0.4 553,411 + Psest_0498 0.47 -0.4 553,963 + -1.4 553,963 + -0.8 553,964 - +1.0 553,964 - +0.6 553,993 + +0.2 553,993 + -0.3 553,993 + -0.0 553,993 + -1.0 553,993 + -0.0 553,994 - +0.5 554,046 + +1.2 554,046 + -0.0 554,047 - -0.1 554,047 - +0.1 554,047 - +1.6 554,099 + +0.8 554,137 + +0.1 554,415 + Psest_0499 0.41 -0.4 554,415 + Psest_0499 0.41 +1.2 554,415 + Psest_0499 0.41 -0.7 554,416 - Psest_0499 0.41 -0.6 554,416 - Psest_0499 0.41 -0.0 554,416 - Psest_0499 0.41 -2.6 554,668 - Psest_0499 0.73 -0.6 554,668 - Psest_0499 0.73 +0.2 554,680 - Psest_0499 0.74 +0.1 554,680 - Psest_0499 0.74 +0.8 554,680 - Psest_0499 0.74 -0.8
Or see this region's nucleotide sequence