Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0442

Experiment: Def 5-Hydroxymethylfurfural 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0441 and Psest_0442 are separated by 25 nucleotidesPsest_0442 and Psest_0443 are separated by 432 nucleotides Psest_0441: Psest_0441 - Subtilisin-like serine proteases, at 479,737 to 482,166 _0441 Psest_0442: Psest_0442 - ATPases of the AAA+ class, at 482,192 to 483,178 _0442 Psest_0443: Psest_0443 - methionine-S-sulfoxide reductase, at 483,611 to 484,156 _0443 Position (kb) 482 483 484Strain fitness (log2 ratio) -2 -1 0 1 2at 481.249 kb on + strand, within Psest_0441at 481.250 kb on - strand, within Psest_0441at 481.250 kb on - strand, within Psest_0441at 481.250 kb on - strand, within Psest_0441at 481.259 kb on + strand, within Psest_0441at 481.259 kb on + strand, within Psest_0441at 481.284 kb on + strand, within Psest_0441at 481.284 kb on + strand, within Psest_0441at 481.284 kb on + strand, within Psest_0441at 481.285 kb on - strand, within Psest_0441at 481.285 kb on - strand, within Psest_0441at 481.285 kb on - strand, within Psest_0441at 481.426 kb on + strand, within Psest_0441at 481.427 kb on - strand, within Psest_0441at 481.427 kb on - strand, within Psest_0441at 481.427 kb on - strand, within Psest_0441at 481.438 kb on + strand, within Psest_0441at 481.528 kb on + strand, within Psest_0441at 481.529 kb on - strand, within Psest_0441at 481.529 kb on - strand, within Psest_0441at 481.529 kb on - strand, within Psest_0441at 481.529 kb on - strand, within Psest_0441at 481.529 kb on - strand, within Psest_0441at 481.563 kb on - strand, within Psest_0441at 481.602 kb on + strand, within Psest_0441at 481.602 kb on + strand, within Psest_0441at 481.602 kb on + strand, within Psest_0441at 481.602 kb on + strand, within Psest_0441at 481.603 kb on - strand, within Psest_0441at 481.603 kb on - strand, within Psest_0441at 481.603 kb on - strand, within Psest_0441at 481.645 kb on + strand, within Psest_0441at 481.669 kb on + strand, within Psest_0441at 481.670 kb on - strand, within Psest_0441at 481.670 kb on - strand, within Psest_0441at 481.673 kb on + strand, within Psest_0441at 481.673 kb on + strand, within Psest_0441at 481.673 kb on + strand, within Psest_0441at 481.673 kb on + strand, within Psest_0441at 481.673 kb on + strand, within Psest_0441at 481.673 kb on + strand, within Psest_0441at 481.673 kb on + strand, within Psest_0441at 481.674 kb on - strand, within Psest_0441at 481.674 kb on - strand, within Psest_0441at 481.674 kb on - strand, within Psest_0441at 481.674 kb on - strand, within Psest_0441at 481.674 kb on - strand, within Psest_0441at 481.684 kb on + strand, within Psest_0441at 481.684 kb on + strand, within Psest_0441at 481.684 kb on + strand, within Psest_0441at 481.805 kb on + strand, within Psest_0441at 481.805 kb on + strand, within Psest_0441at 481.805 kb on + strand, within Psest_0441at 481.805 kb on + strand, within Psest_0441at 481.806 kb on - strand, within Psest_0441at 481.806 kb on - strand, within Psest_0441at 481.806 kb on - strand, within Psest_0441at 481.806 kb on - strand, within Psest_0441at 481.806 kb on - strand, within Psest_0441at 481.825 kb on - strand, within Psest_0441at 481.982 kb on + strandat 481.992 kb on + strandat 481.993 kb on - strandat 481.993 kb on - strandat 482.034 kb on + strandat 482.034 kb on + strandat 482.034 kb on + strandat 482.042 kb on + strandat 482.042 kb on + strandat 482.157 kb on - strandat 482.291 kb on + strand, within Psest_0442at 482.291 kb on + strand, within Psest_0442at 482.293 kb on + strand, within Psest_0442at 482.552 kb on + strand, within Psest_0442at 482.552 kb on + strand, within Psest_0442at 482.753 kb on + strand, within Psest_0442at 482.753 kb on + strand, within Psest_0442at 482.821 kb on + strand, within Psest_0442at 482.864 kb on + strand, within Psest_0442at 482.873 kb on + strand, within Psest_0442at 482.923 kb on + strand, within Psest_0442at 482.923 kb on + strand, within Psest_0442at 482.923 kb on + strand, within Psest_0442at 482.923 kb on + strand, within Psest_0442at 482.933 kb on + strand, within Psest_0442at 482.933 kb on + strand, within Psest_0442at 482.933 kb on + strand, within Psest_0442at 482.933 kb on + strand, within Psest_0442at 482.933 kb on + strand, within Psest_0442at 482.979 kb on + strand, within Psest_0442at 482.979 kb on + strand, within Psest_0442at 482.998 kb on + strand, within Psest_0442at 482.998 kb on + strand, within Psest_0442at 483.001 kb on + strand, within Psest_0442at 483.001 kb on + strand, within Psest_0442at 483.091 kb on + strandat 483.215 kb on + strandat 483.215 kb on + strandat 483.402 kb on - strandat 483.506 kb on + strandat 483.528 kb on + strandat 483.529 kb on - strandat 483.694 kb on + strand, within Psest_0443at 483.764 kb on + strand, within Psest_0443at 483.816 kb on - strand, within Psest_0443at 483.837 kb on - strand, within Psest_0443at 483.906 kb on - strand, within Psest_0443at 484.019 kb on + strand, within Psest_0443at 484.019 kb on + strand, within Psest_0443at 484.019 kb on + strand, within Psest_0443at 484.019 kb on + strand, within Psest_0443at 484.019 kb on + strand, within Psest_0443at 484.019 kb on + strand, within Psest_0443at 484.019 kb on + strand, within Psest_0443at 484.019 kb on + strand, within Psest_0443at 484.020 kb on - strand, within Psest_0443at 484.021 kb on + strand, within Psest_0443at 484.021 kb on + strand, within Psest_0443at 484.021 kb on + strand, within Psest_0443at 484.021 kb on + strand, within Psest_0443at 484.022 kb on - strand, within Psest_0443at 484.029 kb on + strand, within Psest_0443at 484.029 kb on + strand, within Psest_0443at 484.029 kb on + strand, within Psest_0443at 484.029 kb on + strand, within Psest_0443at 484.029 kb on + strand, within Psest_0443at 484.029 kb on + strand, within Psest_0443at 484.029 kb on + strand, within Psest_0443at 484.029 kb on + strand, within Psest_0443at 484.029 kb on + strand, within Psest_0443at 484.030 kb on - strand, within Psest_0443at 484.059 kb on + strand, within Psest_0443at 484.136 kb on + strandat 484.169 kb on - strandat 484.169 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def 5-Hydroxymethylfurfural 5 mM
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481,249 + Psest_0441 0.62 -0.5
481,250 - Psest_0441 0.62 +0.2
481,250 - Psest_0441 0.62 +0.2
481,250 - Psest_0441 0.62 +0.2
481,259 + Psest_0441 0.63 -1.1
481,259 + Psest_0441 0.63 +0.9
481,284 + Psest_0441 0.64 -0.7
481,284 + Psest_0441 0.64 +1.2
481,284 + Psest_0441 0.64 +0.6
481,285 - Psest_0441 0.64 +0.4
481,285 - Psest_0441 0.64 +1.8
481,285 - Psest_0441 0.64 +0.2
481,426 + Psest_0441 0.70 +0.0
481,427 - Psest_0441 0.70 +0.8
481,427 - Psest_0441 0.70 +0.3
481,427 - Psest_0441 0.70 +0.9
481,438 + Psest_0441 0.70 -0.2
481,528 + Psest_0441 0.74 -0.9
481,529 - Psest_0441 0.74 -0.2
481,529 - Psest_0441 0.74 -0.5
481,529 - Psest_0441 0.74 +0.6
481,529 - Psest_0441 0.74 -0.2
481,529 - Psest_0441 0.74 +0.1
481,563 - Psest_0441 0.75 +0.2
481,602 + Psest_0441 0.77 +0.6
481,602 + Psest_0441 0.77 +0.1
481,602 + Psest_0441 0.77 -0.7
481,602 + Psest_0441 0.77 +0.0
481,603 - Psest_0441 0.77 +1.2
481,603 - Psest_0441 0.77 +0.8
481,603 - Psest_0441 0.77 +0.0
481,645 + Psest_0441 0.79 -1.0
481,669 + Psest_0441 0.80 -0.4
481,670 - Psest_0441 0.80 +0.7
481,670 - Psest_0441 0.80 -0.4
481,673 + Psest_0441 0.80 -1.2
481,673 + Psest_0441 0.80 -0.2
481,673 + Psest_0441 0.80 +0.0
481,673 + Psest_0441 0.80 +0.5
481,673 + Psest_0441 0.80 +0.8
481,673 + Psest_0441 0.80 -0.4
481,673 + Psest_0441 0.80 -1.2
481,674 - Psest_0441 0.80 +0.2
481,674 - Psest_0441 0.80 +0.3
481,674 - Psest_0441 0.80 +0.7
481,674 - Psest_0441 0.80 -1.1
481,674 - Psest_0441 0.80 -0.0
481,684 + Psest_0441 0.80 -0.0
481,684 + Psest_0441 0.80 +1.0
481,684 + Psest_0441 0.80 +0.3
481,805 + Psest_0441 0.85 -0.8
481,805 + Psest_0441 0.85 -0.4
481,805 + Psest_0441 0.85 +0.2
481,805 + Psest_0441 0.85 +0.2
481,806 - Psest_0441 0.85 +0.7
481,806 - Psest_0441 0.85 +0.6
481,806 - Psest_0441 0.85 +1.0
481,806 - Psest_0441 0.85 +0.0
481,806 - Psest_0441 0.85 +0.2
481,825 - Psest_0441 0.86 -0.5
481,982 + +0.9
481,992 + +0.8
481,993 - +0.5
481,993 - -0.5
482,034 + +0.3
482,034 + +0.3
482,034 + -0.1
482,042 + +0.3
482,042 + +0.4
482,157 - -0.6
482,291 + Psest_0442 0.10 +2.2
482,291 + Psest_0442 0.10 -0.4
482,293 + Psest_0442 0.10 -1.1
482,552 + Psest_0442 0.36 -2.1
482,552 + Psest_0442 0.36 -1.1
482,753 + Psest_0442 0.57 -0.4
482,753 + Psest_0442 0.57 -1.5
482,821 + Psest_0442 0.64 -0.8
482,864 + Psest_0442 0.68 -0.4
482,873 + Psest_0442 0.69 -0.4
482,923 + Psest_0442 0.74 +0.2
482,923 + Psest_0442 0.74 -2.0
482,923 + Psest_0442 0.74 +0.2
482,923 + Psest_0442 0.74 -2.1
482,933 + Psest_0442 0.75 -1.1
482,933 + Psest_0442 0.75 -0.8
482,933 + Psest_0442 0.75 -0.5
482,933 + Psest_0442 0.75 +0.2
482,933 + Psest_0442 0.75 -1.1
482,979 + Psest_0442 0.80 -0.8
482,979 + Psest_0442 0.80 -0.4
482,998 + Psest_0442 0.82 +1.2
482,998 + Psest_0442 0.82 +1.2
483,001 + Psest_0442 0.82 -2.3
483,001 + Psest_0442 0.82 -1.4
483,091 + -1.4
483,215 + +0.5
483,215 + +0.2
483,402 - +1.2
483,506 + +0.2
483,528 + +1.2
483,529 - -1.1
483,694 + Psest_0443 0.15 +0.7
483,764 + Psest_0443 0.28 -0.6
483,816 - Psest_0443 0.38 +0.3
483,837 - Psest_0443 0.41 -0.0
483,906 - Psest_0443 0.54 +0.2
484,019 + Psest_0443 0.75 -0.7
484,019 + Psest_0443 0.75 -0.2
484,019 + Psest_0443 0.75 -1.7
484,019 + Psest_0443 0.75 -0.2
484,019 + Psest_0443 0.75 +0.4
484,019 + Psest_0443 0.75 -0.7
484,019 + Psest_0443 0.75 -1.0
484,019 + Psest_0443 0.75 +0.4
484,020 - Psest_0443 0.75 +0.6
484,021 + Psest_0443 0.75 +0.2
484,021 + Psest_0443 0.75 +0.2
484,021 + Psest_0443 0.75 +0.5
484,021 + Psest_0443 0.75 -1.6
484,022 - Psest_0443 0.75 -0.8
484,029 + Psest_0443 0.77 -0.7
484,029 + Psest_0443 0.77 +0.8
484,029 + Psest_0443 0.77 -0.5
484,029 + Psest_0443 0.77 -0.2
484,029 + Psest_0443 0.77 +0.2
484,029 + Psest_0443 0.77 -0.5
484,029 + Psest_0443 0.77 +0.1
484,029 + Psest_0443 0.77 -0.4
484,029 + Psest_0443 0.77 -0.0
484,030 - Psest_0443 0.77 -0.4
484,059 + Psest_0443 0.82 +0.9
484,136 + +0.5
484,169 - -1.0
484,169 - +0.2

Or see this region's nucleotide sequence