Experiment: Def 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_4263 and Psest_4264 overlap by 4 nucleotides Psest_4264 and Psest_4265 overlap by 4 nucleotides Psest_4265 and Psest_4266 are separated by 127 nucleotides
Psest_4263: Psest_4263 - glucose-1-phosphate thymidylyltransferase, short form, at 4,452,749 to 4,453,621
_4263
Psest_4264: Psest_4264 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 4,453,618 to 4,454,163
_4264
Psest_4265: Psest_4265 - dTDP-4-dehydrorhamnose reductase, at 4,454,160 to 4,455,068
_4265
Psest_4266: Psest_4266 - Signal transduction histidine kinase regulating C4-dicarboxylate transport system, at 4,455,196 to 4,457,001
_4266
Position (kb) 4454
4455
4456 Strain fitness (log2 ratio) -1
0
1
2
3 at 4454.331 kb on + strand, within Psest_4265 at 4454.331 kb on + strand, within Psest_4265 at 4454.331 kb on + strand, within Psest_4265 at 4454.332 kb on - strand, within Psest_4265 at 4454.333 kb on + strand, within Psest_4265 at 4454.334 kb on - strand, within Psest_4265 at 4454.445 kb on + strand, within Psest_4265 at 4454.446 kb on - strand, within Psest_4265 at 4454.457 kb on + strand, within Psest_4265 at 4454.457 kb on + strand, within Psest_4265 at 4454.457 kb on + strand, within Psest_4265 at 4454.457 kb on + strand, within Psest_4265 at 4454.458 kb on - strand, within Psest_4265 at 4454.458 kb on - strand, within Psest_4265 at 4454.458 kb on - strand, within Psest_4265 at 4454.487 kb on + strand, within Psest_4265 at 4454.487 kb on + strand, within Psest_4265 at 4454.488 kb on - strand, within Psest_4265 at 4454.488 kb on - strand, within Psest_4265 at 4454.522 kb on - strand, within Psest_4265 at 4454.522 kb on - strand, within Psest_4265 at 4454.522 kb on - strand, within Psest_4265 at 4454.523 kb on + strand, within Psest_4265 at 4454.578 kb on - strand, within Psest_4265 at 4454.578 kb on - strand, within Psest_4265 at 4454.578 kb on - strand, within Psest_4265 at 4454.578 kb on - strand, within Psest_4265 at 4454.605 kb on - strand, within Psest_4265 at 4454.781 kb on + strand, within Psest_4265 at 4454.781 kb on + strand, within Psest_4265 at 4455.168 kb on - strand at 4455.301 kb on + strand at 4455.302 kb on - strand at 4455.349 kb on + strand at 4455.349 kb on + strand at 4455.349 kb on + strand at 4455.350 kb on - strand at 4455.350 kb on - strand at 4455.350 kb on - strand at 4455.350 kb on - strand at 4455.481 kb on - strand, within Psest_4266 at 4455.481 kb on - strand, within Psest_4266 at 4455.517 kb on + strand, within Psest_4266 at 4455.517 kb on + strand, within Psest_4266 at 4455.517 kb on + strand, within Psest_4266 at 4455.518 kb on - strand, within Psest_4266 at 4455.518 kb on - strand, within Psest_4266 at 4455.518 kb on - strand, within Psest_4266 at 4455.518 kb on - strand, within Psest_4266 at 4455.682 kb on + strand, within Psest_4266 at 4455.683 kb on - strand, within Psest_4266 at 4455.683 kb on - strand, within Psest_4266 at 4455.683 kb on - strand, within Psest_4266 at 4455.683 kb on - strand, within Psest_4266 at 4456.001 kb on + strand, within Psest_4266 at 4456.001 kb on + strand, within Psest_4266 at 4456.001 kb on + strand, within Psest_4266 at 4456.002 kb on - strand, within Psest_4266
Per-strain Table
Position Strand Gene LocusTag Fraction Def 5-Hydroxymethylfurfural 5 mM remove 4,454,331 + Psest_4265 0.19 +0.2 4,454,331 + Psest_4265 0.19 +0.7 4,454,331 + Psest_4265 0.19 +1.1 4,454,332 - Psest_4265 0.19 +3.1 4,454,333 + Psest_4265 0.19 +0.9 4,454,334 - Psest_4265 0.19 +1.5 4,454,445 + Psest_4265 0.31 +1.3 4,454,446 - Psest_4265 0.31 +1.1 4,454,457 + Psest_4265 0.33 +1.7 4,454,457 + Psest_4265 0.33 +1.3 4,454,457 + Psest_4265 0.33 +0.7 4,454,457 + Psest_4265 0.33 +1.4 4,454,458 - Psest_4265 0.33 +1.4 4,454,458 - Psest_4265 0.33 +2.3 4,454,458 - Psest_4265 0.33 +0.2 4,454,487 + Psest_4265 0.36 +0.9 4,454,487 + Psest_4265 0.36 +0.9 4,454,488 - Psest_4265 0.36 +1.0 4,454,488 - Psest_4265 0.36 +1.8 4,454,522 - Psest_4265 0.40 +0.7 4,454,522 - Psest_4265 0.40 +1.3 4,454,522 - Psest_4265 0.40 -0.5 4,454,523 + Psest_4265 0.40 +1.7 4,454,578 - Psest_4265 0.46 +1.5 4,454,578 - Psest_4265 0.46 +2.0 4,454,578 - Psest_4265 0.46 +0.5 4,454,578 - Psest_4265 0.46 +0.8 4,454,605 - Psest_4265 0.49 +0.5 4,454,781 + Psest_4265 0.68 +0.5 4,454,781 + Psest_4265 0.68 +0.7 4,455,168 - +1.0 4,455,301 + -0.7 4,455,302 - -1.0 4,455,349 + -0.3 4,455,349 + -0.2 4,455,349 + -0.5 4,455,350 - -0.3 4,455,350 - -0.1 4,455,350 - -0.7 4,455,350 - +0.3 4,455,481 - Psest_4266 0.16 -0.3 4,455,481 - Psest_4266 0.16 -0.6 4,455,517 + Psest_4266 0.18 +0.6 4,455,517 + Psest_4266 0.18 +0.5 4,455,517 + Psest_4266 0.18 -0.4 4,455,518 - Psest_4266 0.18 -0.0 4,455,518 - Psest_4266 0.18 -0.0 4,455,518 - Psest_4266 0.18 +0.3 4,455,518 - Psest_4266 0.18 -0.1 4,455,682 + Psest_4266 0.27 -0.1 4,455,683 - Psest_4266 0.27 -1.0 4,455,683 - Psest_4266 0.27 -0.5 4,455,683 - Psest_4266 0.27 -0.6 4,455,683 - Psest_4266 0.27 -1.3 4,456,001 + Psest_4266 0.45 +0.8 4,456,001 + Psest_4266 0.45 -0.4 4,456,001 + Psest_4266 0.45 -0.5 4,456,002 - Psest_4266 0.45 +2.3
Or see this region's nucleotide sequence