Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4085

Experiment: Def 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Def 5-Hydroxymethylfurfural 5 mM
4,260,157	+		Psest_4084	0.54	-3.7
4,260,157	+		Psest_4084	0.54	-2.1
4,260,157	+		Psest_4084	0.54	-0.4
4,260,158	-		Psest_4084	0.54	-1.1
4,260,158	-		Psest_4084	0.54	+0.0
4,260,158	-		Psest_4084	0.54	-1.1
4,260,175	+		Psest_4084	0.55	-2.2
4,260,175	+		Psest_4084	0.55	-2.0
4,260,175	+		Psest_4084	0.55	-2.6
4,260,175	+		Psest_4084	0.55	-1.3
4,260,175	+		Psest_4084	0.55	-0.6
4,260,175	+		Psest_4084	0.55	-0.1
4,260,175	+		Psest_4084	0.55	-2.5
4,260,175	+		Psest_4084	0.55	-0.8
4,260,176	-		Psest_4084	0.55	-1.5
4,260,176	-		Psest_4084	0.55	-2.7
4,260,181	+		Psest_4084	0.55	+1.3
4,260,181	+		Psest_4084	0.55	-1.9
4,260,181	+		Psest_4084	0.55	-1.3
4,260,181	+		Psest_4084	0.55	-0.9
4,260,181	+		Psest_4084	0.55	-1.3
4,260,181	+		Psest_4084	0.55	-0.5
4,260,182	-		Psest_4084	0.55	-2.1
4,260,182	-		Psest_4084	0.55	-0.5
4,260,182	-		Psest_4084	0.55	-1.4
4,260,182	-		Psest_4084	0.55	-1.5
4,260,554	-		Psest_4084	0.76	+0.5
4,260,554	-		Psest_4084	0.76	-3.5
4,260,554	-		Psest_4084	0.76	-1.3
4,260,617	+		Psest_4084	0.79	-3.3
4,260,709	+		Psest_4084	0.84	-2.3
4,260,709	+		Psest_4084	0.84	-2.4
4,260,709	+		Psest_4084	0.84	+0.3
4,260,710	-		Psest_4084	0.84	-1.3
4,261,079	+				-0.1
4,261,080	-				-1.9
4,261,080	-				-1.3
4,261,080	-				-0.2
4,261,163	+		Psest_4085	0.11	-1.1
4,261,163	+		Psest_4085	0.11	-1.7
4,261,164	-		Psest_4085	0.11	-1.8
4,261,166	+		Psest_4085	0.11	-1.3
4,261,166	+		Psest_4085	0.11	-3.2
4,261,166	+		Psest_4085	0.11	-1.5
4,261,166	+		Psest_4085	0.11	-1.6
4,261,166	+		Psest_4085	0.11	-2.3
4,261,166	+		Psest_4085	0.11	-0.3
4,261,166	+		Psest_4085	0.11	-1.6
4,261,166	+		Psest_4085	0.11	-3.0
4,261,167	-		Psest_4085	0.11	-1.3
4,261,167	-		Psest_4085	0.11	-2.3
4,261,167	-		Psest_4085	0.11	-1.9
4,261,167	-		Psest_4085	0.11	-1.1
4,261,167	-		Psest_4085	0.11	-1.8
4,261,283	+		Psest_4085	0.20	-1.8
4,261,283	+		Psest_4085	0.20	-2.5
4,261,287	-		Psest_4085	0.20	-1.6
4,261,302	-		Psest_4085	0.21	-0.7
4,261,310	+		Psest_4085	0.21	-1.3
4,261,310	+		Psest_4085	0.21	-2.0
4,261,310	+		Psest_4085	0.21	-1.9
4,261,310	+		Psest_4085	0.21	-1.6
4,261,310	+		Psest_4085	0.21	-2.2
4,261,311	-		Psest_4085	0.22	+0.9
4,261,311	-		Psest_4085	0.22	-1.7
4,261,311	-		Psest_4085	0.22	-2.5
4,261,352	+		Psest_4085	0.24	-2.5
4,261,352	+		Psest_4085	0.24	-1.5
4,261,352	+		Psest_4085	0.24	-2.4
4,261,353	-		Psest_4085	0.25	-1.1
4,261,353	-		Psest_4085	0.25	-0.7
4,261,355	+		Psest_4085	0.25	-2.6
4,261,574	+		Psest_4085	0.40	-0.7
4,261,574	+		Psest_4085	0.40	-2.4
4,261,574	+		Psest_4085	0.40	+0.3
4,261,574	+		Psest_4085	0.40	-0.3
4,261,574	+		Psest_4085	0.40	-2.4
4,261,574	+		Psest_4085	0.40	-3.0
4,261,575	-		Psest_4085	0.40	-0.9
4,261,575	-		Psest_4085	0.40	-3.5
4,261,575	-		Psest_4085	0.40	-1.1
4,261,575	-		Psest_4085	0.40	-2.7
4,261,575	-		Psest_4085	0.40	-1.7
4,261,664	+		Psest_4085	0.46	-1.6
4,261,664	+		Psest_4085	0.46	+0.7
4,261,665	-		Psest_4085	0.47	-1.4
4,261,665	-		Psest_4085	0.47	-2.6
4,261,665	-		Psest_4085	0.47	-1.8
4,261,665	-		Psest_4085	0.47	-1.7
4,261,665	-		Psest_4085	0.47	-1.6
4,261,801	-		Psest_4085	0.56	-1.1
4,261,923	+		Psest_4085	0.65	-2.6
4,261,924	-		Psest_4085	0.65	-0.5
4,261,924	-		Psest_4085	0.65	-2.2
4,262,566	-				-0.2
4,262,587	+				-0.4
4,262,587	+				+0.6
4,262,587	+				-0.4
4,262,643	+				-0.5
4,262,733	+				-1.6
4,262,733	+				-1.5
4,262,733	+				-1.5
4,262,830	-		Psest_4086	0.18	-1.5
4,262,830	-		Psest_4086	0.18	-2.0
4,262,830	-		Psest_4086	0.18	-2.1
4,262,847	+		Psest_4086	0.19	-2.2
4,262,847	+		Psest_4086	0.19	-1.1
4,262,847	+		Psest_4086	0.19	-0.6
4,262,847	+		Psest_4086	0.19	-1.1
4,262,847	+		Psest_4086	0.19	-1.3
4,262,848	-		Psest_4086	0.19	-2.1
4,262,848	-		Psest_4086	0.19	-3.1
4,262,988	+		Psest_4086	0.34	-1.2
4,262,989	-		Psest_4086	0.34	-1.5
4,262,989	-		Psest_4086	0.34	-1.6
4,262,989	-		Psest_4086	0.34	-2.4
4,262,989	-		Psest_4086	0.34	+0.5
4,262,989	-		Psest_4086	0.34	-2.3
4,262,989	-		Psest_4086	0.34	-1.1
4,263,037	+		Psest_4086	0.39	-3.6
4,263,038	-		Psest_4086	0.39	-0.7
4,263,038	-		Psest_4086	0.39	-1.6
4,263,297	+		Psest_4086	0.66	-1.8
4,263,297	+		Psest_4086	0.66	-1.9
4,263,297	+		Psest_4086	0.66	+0.3
4,263,298	-		Psest_4086	0.66	-0.6
4,263,298	-		Psest_4086	0.66	-1.0
4,263,298	-		Psest_4086	0.66	+1.3
4,263,388	+		Psest_4086	0.76	+0.7
4,263,389	-		Psest_4086	0.76	-1.3